Rh6CG022800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005418
Physical Location & Seq
Forward (+)
2048743 .. 2049771
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG022800.1

Sequence Viewer

Length: 426 bp
ATGGAGTGGTTCTACCCTAAGAGAAGGGGTCCAGAGTGGAAGCAAGGGTGGACTGGCCAGACCCTCACCTCCATTTCTGCACCACCTTTACATTTACTCACCATCTTTGCCATTGTAATTTCATTGCTATGGCTTTCTCAATACACCGAGTACAAATCCCAAATGCAACAGACCGCCGTTAACTTCCAGATATTGTTAATGTTGCTGCCTGTTTTCTTAATATTTTTGGTAGCTTCATGTTCTTCGATTTCCTCCGGTGGATGGTTCAACTTCCGGCGCCGGCACCCACAGCACGAGTTGGTCAACCAAGCCGGTGGTTGCTCGCCGTGGGGTGTTGCCATATTGGTAGCGCTGGTTTTGGTCTTGCTATCATACCAATCATCTTTTCATTCGAAGTGGTTTGGACCTCTTGGGAGATTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.08

Weight (kDa)

9.62

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 276, 282
AciI CCGC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 2 cut(s) 279, 352
AspS9I GGNCC 2 cut(s) 29, 404
AsuHPI GGTGA 2 cut(s) 58, 91
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 2 cut(s) 29, 404
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 2 cut(s) 276, 282
BauI CACGAG 1 cut(s) 293
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 110, 255
BceAI ACGGC 2 cut(s) 161, 310
BfoI RGCGCY 2 cut(s) 280, 353
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 29, 404
BmgT120I GGNCC 2 cut(s) 29, 404
BmiI GGNNCC 3 cut(s) 30, 278, 284
Bpu14I TTCGAA 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 2 cut(s) 279, 311
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 2 cut(s) 276, 282
BsiSI CCGG 4 cut(s) 255, 274, 280, 312
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 392
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 30, 278, 284
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 276, 282
BsrDI GCAATG 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 279, 311
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 2 cut(s) 279, 311
BssECI CCNNGG 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 281, 323
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 266
BstH2I RGCGCY 2 cut(s) 280, 353
BstHHI GCGC 2 cut(s) 279, 352
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 281, 323
CfoI GCGC 2 cut(s) 279, 352
Cfr10I RCCGGY 2 cut(s) 279, 311
Cfr13I GGNCC 2 cut(s) 29, 404
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 237
CviJI RGCY 4 cut(s) 57, 133, 233, 311
CviKI_1 RGCY 4 cut(s) 57, 133, 233, 311
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 18
DinI GGCGCC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 29, 404
Eco47III AGCGCT 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
FaeI CATG 1 cut(s) 240
FaiI YATR 4 cut(s) 130, 238, 341, 373
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 206
GlaI GCGC 2 cut(s) 278, 351
GluI GCNGC 1 cut(s) 206
HaeII RGCGCY 2 cut(s) 280, 353
HaeIII GGCC 1 cut(s) 57
HapII CCGG 4 cut(s) 255, 274, 280, 312
HhaI GCGC 2 cut(s) 279, 352
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 1 cut(s) 240
Hin6I GCGC 2 cut(s) 277, 350
HinP1I GCGC 2 cut(s) 277, 350
HincII GTYRAC 2 cut(s) 181, 304
HindII GTYRAC 2 cut(s) 181, 304
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 4 cut(s) 255, 274, 280, 312
HphI GGTGA 2 cut(s) 58, 91
Hpy166II GTNNAC 3 cut(s) 51, 181, 304
Hpy188III TCNNGA 2 cut(s) 32, 187
Hpy8I GTNNAC 3 cut(s) 51, 181, 304
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 80, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 240
HspAI GCGC 2 cut(s) 277, 350
KasI GGCGCC 1 cut(s) 276
KroI GCCGGC 1 cut(s) 279
KroNI GCCGGC 1 cut(s) 281
KspAI GTTAAC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 192
MboII GAAGA 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 277
MnlI CCTC 4 cut(s) 74, 79, 262, 417
Mox20I TGGCCA 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 57
MseI TTAA 3 cut(s) 180, 197, 218
MslI CAYNNNNRTG 1 cut(s) 127
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 4 cut(s) 255, 274, 280, 312
MwoI GCNNNNNNNGC 1 cut(s) 289
NaeI GCCGGC 1 cut(s) 281
NarI GGCGCC 1 cut(s) 277
NgoMIV GCCGGC 1 cut(s) 279
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 30, 278, 284
NspV TTCGAA 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 207
PluTI GGCGCC 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 30, 278, 284
PspPI GGNCC 2 cut(s) 29, 404
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 127
SaqAI TTAA 3 cut(s) 180, 197, 218
SatI GCNGC 1 cut(s) 206
Sau96I GGNCC 2 cut(s) 29, 404
SetI ASST 4 cut(s) 71, 88, 235, 409
SfoI GGCGCC 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 2 cut(s) 29, 404
SmiMI CAYNNNNRTG 1 cut(s) 127
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 174
SspDI GGCGCC 1 cut(s) 276
SspI AATATT 1 cut(s) 222
TaqI TCGA 2 cut(s) 245, 392
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 3 cut(s) 180, 197, 218
Tru9I TTAA 3 cut(s) 180, 197, 218
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 111, 225, 377
VpaK11BI GGWCC 2 cut(s) 29, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.