Rh6AG431300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013929
Physical Location & Seq
Forward (+)
62187015 .. 62189141
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG431300.1

Sequence Viewer

Length: 864 bp
ATGGCCTCCGACGACGACGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGCGGCAATAGCGAAGCCGAAGGTGAAGAAAGAAGAGCTCAATAACGGTTCTGGTAGCCCAAAGCCCAAGCCCAGAAACCCAATTGTGAAAAAGCAAGAGAAGCAGAACGAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGATGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCTAAGGCCGATAAGAATGTGAAGAGAAAGAGAGAAGAGGCGGCGGCGACACCGGAGAAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTGAAGAGAGAGACCCACTTAGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGGCTGATGGAGTCGGGTTTGCTACCTAAAGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAATAGTCGTCACCTTCAAAAAATCAGTTCTCCAATTAAAGCTGTAGCTTCTGGAAGGAAGACCACAACAGTCAGTACTACAAATAGAGGTGGATCTTCTGTAAAGAAGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCAGCCTCCAAGGGCGCATCAAATCTGTCTAAGAAGCGGAAGAAAGATGATGAAAGCTCAGAGAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.98

Weight (kDa)

9.83

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 43, 77, 347, 350, 778
AclWI GGATC 2 cut(s) 34, 661
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 1 cut(s) 637
AgsI TTSAA 1 cut(s) 578
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 8 cut(s) 112, 290, 300, 472, 602, 608, 798, 860
AluI AGCT 8 cut(s) 112, 290, 300, 472, 602, 608, 798, 860
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 408, 426, 449, 832
AlwI GGATC 2 cut(s) 34, 661
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 2 cut(s) 3, 312
ApeKI GCWGC 3 cut(s) 74, 469, 857
AspLEI GCGC 1 cut(s) 758
AsuC2I CCSGG 1 cut(s) 713
AsuHPI GGTGA 2 cut(s) 109, 563
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 3 cut(s) 258, 626, 674
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 86, 481
BccI CCATC 1 cut(s) 499
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 1 cut(s) 402
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 4 cut(s) 408, 426, 449, 832
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 6 cut(s) 75, 78, 348, 351, 470, 858
BlsI GCNGC 6 cut(s) 76, 79, 349, 352, 471, 859
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 402, 713
BmeRI GACNNNNNGTC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 402, 713
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 3 cut(s) 258, 626, 674
BplI GAGNNNNNCTC 2 cut(s) 403, 435
BpuMI CCSGG 1 cut(s) 713
BsaI GGTCTC 2 cut(s) 426, 832
BsaJI CCNNGG 2 cut(s) 711, 750
BsaWI WCCGGW 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 711, 750
BseMII CTCAG 1 cut(s) 813
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 2 cut(s) 86, 481
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 314
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 359, 713
BsmAI GTCTC 4 cut(s) 408, 426, 449, 832
BsmBI CGTCTC 2 cut(s) 408, 449
BsnI GGCC 2 cut(s) 5, 314
Bso31I GGTCTC 2 cut(s) 426, 832
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 39, 653
BspACI CCGC 5 cut(s) 43, 77, 347, 350, 778
BspANI GGCC 2 cut(s) 5, 314
BspCNI CTCAG 1 cut(s) 812
BspPI GGATC 2 cut(s) 34, 661
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 426, 832
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 711, 750
BssMI GATC 2 cut(s) 39, 653
BssT1I CCWWGG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 122, 631, 688
Bst6I CTCTTC 6 cut(s) 102, 323, 336, 368, 404, 420
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 6 cut(s) 291, 309, 440, 771, 799, 861
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 2 cut(s) 42, 656
BstMAI GTCTC 4 cut(s) 408, 426, 449, 832
BstMBI GATC 2 cut(s) 39, 653
BstMWI GCNNNNNNNGC 4 cut(s) 83, 175, 466, 804
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 400, 711
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 86, 481
BstV2I GAAGAC 3 cut(s) 258, 626, 674
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BsuRI GGCC 2 cut(s) 5, 314
BtgZI GCGATG 2 cut(s) 204, 285
Cac8I GCNNGC 1 cut(s) 855
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 1 cut(s) 758
CseI GACGC 2 cut(s) 425, 466
Csp6I GTAC 1 cut(s) 636
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 6 cut(s) 291, 309, 440, 771, 799, 861
DpnI GATC 2 cut(s) 41, 655
DpnII GATC 2 cut(s) 39, 653
DriI GACNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 6 cut(s) 102, 323, 336, 368, 404, 420
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 6 cut(s) 102, 323, 336, 368, 404, 420
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 750
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 2 cut(s) 426, 832
Eco32I GATATC 1 cut(s) 831
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 750
Esp3I CGTCTC 2 cut(s) 408, 449
FaiI YATR 2 cut(s) 393, 465
Fnu4HI GCNGC 6 cut(s) 75, 78, 348, 351, 470, 858
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 6 cut(s) 75, 78, 348, 351, 470, 858
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 757
GluI GCNGC 6 cut(s) 75, 78, 348, 351, 470, 858
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 5, 314
HapII CCGG 2 cut(s) 359, 713
HgaI GACGC 2 cut(s) 425, 466
HhaI GCGC 1 cut(s) 758
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HinfI GANTC 2 cut(s) 509, 809
HpaII CCGG 2 cut(s) 359, 713
HphI GGTGA 2 cut(s) 109, 563
Hpy188I TCNGA 5 cut(s) 10, 408, 802, 814, 835
Hpy188III TCNNGA 3 cut(s) 422, 612, 691
Hpy99I CGWCG 3 cut(s) 14, 17, 20
HpyAV CCTTC 5 cut(s) 88, 241, 379, 584, 609
HpyCH4III ACNGT 3 cut(s) 122, 631, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 175, 466, 804
HpyF3I CTNAG 6 cut(s) 291, 309, 440, 771, 799, 861
HspAI GCGC 1 cut(s) 756
Kzo9I GATC 2 cut(s) 39, 653
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 71, 305, 424
Lsp1109I GCAGC 2 cut(s) 86, 481
LweI GCATC 1 cut(s) 767
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 569, 682
MalI GATC 2 cut(s) 41, 655
MboI GATC 2 cut(s) 39, 653
MfeI CAATTG 2 cut(s) 156, 210
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 156, 210, 304, 594
MlyI GAGTC 2 cut(s) 518, 818
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 8 cut(s) 16, 337, 369, 523, 526, 641, 730, 757
MseI TTAA 2 cut(s) 243, 597
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 359, 713
MspR9I CCNGG 2 cut(s) 402, 713
MunI CAATTG 2 cut(s) 156, 210
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 83, 175, 466, 804
NciI CCSGG 1 cut(s) 713
NdeII GATC 2 cut(s) 39, 653
NmuCI GTSAC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 267
PkrI GCNGC 6 cut(s) 76, 79, 349, 352, 471, 859
PleI GAGTC 2 cut(s) 517, 817
PpsI GAGTC 2 cut(s) 517, 817
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 243, 597
SatI GCNGC 6 cut(s) 75, 78, 348, 351, 470, 858
Sau3AI GATC 2 cut(s) 39, 653
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 2 cut(s) 518, 818
ScrFI CCNGG 2 cut(s) 402, 713
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 767
SfcI CTRYAG 1 cut(s) 603
Sse9I AATT 4 cut(s) 156, 210, 304, 594
SsiI CCGC 5 cut(s) 43, 77, 347, 350, 778
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 400, 711
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 3 cut(s) 122, 631, 688
TasI AATT 4 cut(s) 156, 210, 304, 594
TatI WGTACW 1 cut(s) 635
TauI GCSGC 3 cut(s) 80, 350, 353
Tru1I TTAA 2 cut(s) 243, 597
Tru9I TTAA 2 cut(s) 243, 597
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 3 cut(s) 74, 469, 857
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 210, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.