Rh6DG430400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013929
Physical Location & Seq
Forward (+)
60996693 .. 60999018
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG430400.1

Sequence Viewer

Length: 930 bp
ATGCCTTTACCCCCAAAAGACTTTACCTTTTTGGTCTCAATTTCTGATACCCACCGTGAAACCCTAAAGATGGCCTCCGACGACGACGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGCGGCAATAGCCAAGCCGAAGGTGAAGAAAGAAGAGCTCGATAACGGTTCTGATAGCCCAAAGCCCAAGCCCAGAAACCCAATTGTGAAAAAGCAAGAGAAGCAGAACCAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGATGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCTAAGGCCGATAAGAATGTGAAGAGAAAGAGAGAAGAGGCGGCAGCGACACCGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTCAAGAGAGAGACCCGCTTAGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGGCTGATGGAGTCGGGTTTGCTACCTAAAGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAATAGTCGTCACCTTCAAAAAATCAGTTCTCCAATTAAAGCTGTAGCTTCTGGAAGGAAGACCGCAACAGTCAGTACTACAAGTAGAGGTGGATCTTCTGTAAAGAGGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCAGCCTCCAAGGGCGCATCAAATCTGTCTAAGAAGCGGAAGAAAGATGATGAAAGCTCAGAGAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

34.54

Weight (kDa)

9.8

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 112, 146, 416, 503, 690, 844
AclWI GGATC 2 cut(s) 103, 727
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 644
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 8 cut(s) 181, 359, 369, 538, 668, 674, 864, 926
AluI AGCT 8 cut(s) 181, 359, 369, 538, 668, 674, 864, 926
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 5 cut(s) 40, 474, 492, 515, 898
AlwI GGATC 2 cut(s) 103, 727
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 2 cut(s) 72, 381
ApeKI GCWGC 4 cut(s) 143, 419, 535, 923
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 1 cut(s) 735
AsuC2I CCSGG 1 cut(s) 779
AsuHPI GGTGA 2 cut(s) 178, 629
AvaII GGWCC 1 cut(s) 735
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 327, 692
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 155, 431, 547
BccI CCATC 2 cut(s) 64, 565
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 468
BcnI CCSGG 1 cut(s) 779
BcoDI GTCTC 5 cut(s) 40, 474, 492, 515, 898
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 669
BisI GCNGC 6 cut(s) 144, 147, 417, 420, 536, 924
BlsI GCNGC 6 cut(s) 145, 148, 418, 421, 537, 925
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 2 cut(s) 468, 779
Bme18I GGWCC 1 cut(s) 735
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 735
BmrFI CCNGG 2 cut(s) 468, 779
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 327, 692
BplI GAGNNNNNCTC 2 cut(s) 469, 501
Bpu10I CCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 779
BsaI GGTCTC 3 cut(s) 40, 492, 898
BsaJI CCNNGG 2 cut(s) 777, 816
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 777, 816
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 477, 611
BseXI GCAGC 3 cut(s) 155, 431, 547
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 74, 383
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 428, 779
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 5 cut(s) 40, 474, 492, 515, 898
BsmBI CGTCTC 2 cut(s) 474, 515
BsnI GGCC 2 cut(s) 74, 383
Bso31I GGTCTC 3 cut(s) 40, 492, 898
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 108, 719
BspACI CCGC 6 cut(s) 112, 146, 416, 503, 690, 844
BspANI GGCC 2 cut(s) 74, 383
BspCNI CTCAG 1 cut(s) 878
BspPI GGATC 2 cut(s) 103, 727
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 3 cut(s) 40, 492, 898
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 777, 816
BssMI GATC 2 cut(s) 108, 719
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 4 cut(s) 56, 191, 697, 754
Bst6I CTCTTC 5 cut(s) 171, 392, 405, 434, 470
BstC8I GCNNGC 1 cut(s) 921
BstDEI CTNAG 6 cut(s) 360, 378, 506, 837, 865, 927
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 2 cut(s) 111, 722
BstMAI GTCTC 5 cut(s) 40, 474, 492, 515, 898
BstMBI GATC 2 cut(s) 108, 719
BstMWI GCNNNNNNNGC 4 cut(s) 152, 244, 532, 870
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 466, 777
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 155, 431, 547
BstV2I GAAGAC 2 cut(s) 327, 692
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
BsuRI GGCC 2 cut(s) 74, 383
BtgZI GCGATG 2 cut(s) 273, 354
Cac8I GCNNGC 1 cut(s) 921
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 1 cut(s) 824
Cfr13I GGNCC 1 cut(s) 735
CseI GACGC 2 cut(s) 491, 532
Csp6I GTAC 1 cut(s) 702
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 6 cut(s) 360, 378, 506, 837, 865, 927
DpnI GATC 2 cut(s) 110, 721
DpnII GATC 2 cut(s) 108, 719
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 5 cut(s) 171, 392, 405, 434, 470
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 5 cut(s) 171, 392, 405, 434, 470
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 3 cut(s) 40, 492, 898
Eco32I GATATC 1 cut(s) 897
Eco47I GGWCC 1 cut(s) 735
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 466
EcoRV GATATC 1 cut(s) 897
EcoT14I CCWWGG 1 cut(s) 816
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 816
Esp3I CGTCTC 2 cut(s) 474, 515
FaiI YATR 2 cut(s) 459, 531
FauI CCCGC 1 cut(s) 510
Fnu4HI GCNGC 6 cut(s) 144, 147, 417, 420, 536, 924
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 6 cut(s) 144, 147, 417, 420, 536, 924
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 823
GluI GCNGC 6 cut(s) 144, 147, 417, 420, 536, 924
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 74, 383
HapII CCGG 2 cut(s) 428, 779
HgaI GACGC 2 cut(s) 491, 532
HhaI GCGC 1 cut(s) 824
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HinfI GANTC 2 cut(s) 575, 875
HpaII CCGG 2 cut(s) 428, 779
HphI GGTGA 2 cut(s) 178, 629
Hpy188I TCNGA 7 cut(s) 46, 79, 196, 474, 868, 880, 901
Hpy188III TCNNGA 3 cut(s) 491, 678, 757
Hpy99I CGWCG 3 cut(s) 83, 86, 89
HpyAV CCTTC 5 cut(s) 157, 310, 445, 650, 675
HpyCH4III ACNGT 4 cut(s) 56, 191, 697, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 244, 532, 870
HpyF3I CTNAG 6 cut(s) 360, 378, 506, 837, 865, 927
HspAI GCGC 1 cut(s) 822
Kzo9I GATC 2 cut(s) 108, 719
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 140, 374, 490
Lsp1109I GCAGC 3 cut(s) 155, 431, 547
LweI GCATC 1 cut(s) 833
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 635, 748
MalI GATC 2 cut(s) 110, 721
MboI GATC 2 cut(s) 108, 719
MfeI CAATTG 2 cut(s) 225, 279
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 39, 225, 279, 373, 660
MlyI GAGTC 2 cut(s) 584, 884
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 2 cut(s) 312, 663
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 428, 779
MspR9I CCNGG 2 cut(s) 468, 779
MunI CAATTG 2 cut(s) 225, 279
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 4 cut(s) 152, 244, 532, 870
NciI CCSGG 1 cut(s) 779
NdeII GATC 2 cut(s) 108, 719
NmuCI GTSAC 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 336
PkrI GCNGC 6 cut(s) 145, 148, 418, 421, 537, 925
PleI GAGTC 2 cut(s) 583, 883
PpsI GAGTC 2 cut(s) 583, 883
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 1 cut(s) 735
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 719
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 312, 663
SatI GCNGC 6 cut(s) 144, 147, 417, 420, 536, 924
Sau3AI GATC 2 cut(s) 108, 719
Sau96I GGNCC 1 cut(s) 735
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 2 cut(s) 584, 884
ScrFI CCNGG 2 cut(s) 468, 779
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 1 cut(s) 833
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 5 cut(s) 39, 225, 279, 373, 660
SsiI CCGC 6 cut(s) 112, 146, 416, 503, 690, 844
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 466, 777
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 4 cut(s) 56, 191, 697, 754
TaqI TCGA 1 cut(s) 183
TasI AATT 5 cut(s) 39, 225, 279, 373, 660
TatI WGTACW 1 cut(s) 701
TauI GCSGC 2 cut(s) 149, 419
Tru1I TTAA 2 cut(s) 312, 663
Tru9I TTAA 2 cut(s) 312, 663
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 4 cut(s) 143, 419, 535, 923
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 2 cut(s) 279, 873
VpaK11BI GGWCC 1 cut(s) 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.