FvH4_2g38430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013929
Physical Location & Seq
Reverse (-)
27803678 .. 27806077
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38430.t1

Sequence Viewer

Length: 852 bp
ATGGCCTCCGACGACGAAGCGTTGGGTTCGTTGATGCGCAAGAAGAAACAGAATGGGAGCGCCGTAGCGAAGCCGAAGGTGAAGAAAGAAGAGCTGGACAACGGTTCCGAGAACCCAAAGCCCAAGCCCAGAAAGCCAATCGCGAAGAAGAAGGAAGAAAGCGAAAGCGATTTTGAAGATGATGACGAGAAGCCGATTGCGAAGCCGAGAAAAGCGCCGGTTAAGAAGGAAGAGAAGGATGATGGTATTGATGATGCTAAGCCCCTAGCTAAGAAGAGCTCCAATTCTAAGCCTGATAAGAGTGTGAAGAGTGTGAAGAGGAAGAGAGAAGAGGTGGCAGTGGCTGCGGCGACACTGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTGAAGAGAGAGACCCACTTAGGATTTTTTACGAGACGCTTTATGAGCAGGTTCCCAATAGTGAAATGGCACAGGTCTGGCTGATGGAGTCCGGTTTGTTACCTAAGGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAAGAGTCGTCAGCTTCAAAGAGTTAGTTCTCCAAGTAAACCTGTAGCTTCTGGAAGGAAGACCATAACAGTCGTAAAGAAGACCACATCAGTTACTGTCAAGAAAAAACCAACATCAACCCCGGTTTCTTCAAATAAAAAGAAGCCAACACCAGCCTCTAAAGGTGCATCAAATCTGTCTAAGAACCGGAAGAAAGATGATGAAAGCTCAGAGACTGAGTCTGATGATGACTTTGTGTCTGATGAAGACGAAGACTGTGTGATATCCGAGAGACTAAAGAAAAAGAAGGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.69

Weight (kDa)

9.57

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 454
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 438
AgsI TTSAA 3 cut(s) 176, 572, 687
AhdI GACNNNNNGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 7 cut(s) 94, 269, 279, 568, 602, 762, 848
AluI AGCT 7 cut(s) 94, 269, 279, 568, 602, 762, 848
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 5 cut(s) 402, 420, 443, 761, 820
AlwNI CAGNNNCTG 3 cut(s) 344, 650, 770
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 344, 845
AspLEI GCGC 3 cut(s) 39, 62, 217
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 519
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 4 cut(s) 620, 641, 807, 813
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 236, 493
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 5 cut(s) 402, 420, 443, 761, 820
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 2 cut(s) 63, 218
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 3 cut(s) 345, 348, 846
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 3 cut(s) 346, 349, 847
Bme1390I CCNGG 2 cut(s) 396, 677
BmeRI GACNNNNNGTC 1 cut(s) 790
BmiI GGNNCC 2 cut(s) 106, 468
BmrFI CCNGG 2 cut(s) 396, 677
BmsI GCATC 3 cut(s) 24, 244, 731
BpiI GAAGAC 4 cut(s) 620, 641, 807, 813
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpmI CTGGAG 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 677
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 675
BsaWI WCCGGW 2 cut(s) 506, 741
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 360
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 762, 777
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 4 cut(s) 218, 507, 677, 742
BsmAI GTCTC 5 cut(s) 402, 420, 443, 761, 820
BsmBI CGTCTC 2 cut(s) 402, 443
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 281
Bsp1720I GCTNAGC 1 cut(s) 258
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 763, 776
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 106, 468
BspMI ACCTGC 1 cut(s) 454
BspQI GCTCTTC 2 cut(s) 84, 269
BspTNI GGTCTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 4 cut(s) 104, 625, 652, 812
BstAPI GCANNNNNTGC 1 cut(s) 344
BstDEI CTNAG 8 cut(s) 258, 270, 288, 434, 519, 735, 763, 771
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 63, 218
BstHHI GCGC 3 cut(s) 39, 62, 217
BstMAI GTCTC 5 cut(s) 402, 420, 443, 761, 820
BstMWI GCNNNNNNNGC 3 cut(s) 133, 344, 460
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 394, 675
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 4 cut(s) 620, 641, 807, 813
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 345, 353
BtuMI TCGCGA 1 cut(s) 143
BveI ACCTGC 1 cut(s) 454
CaiI CAGNNNCTG 3 cut(s) 344, 650, 770
CfoI GCGC 3 cut(s) 39, 62, 217
Cfr10I RCCGGY 1 cut(s) 217
CseI GACGC 2 cut(s) 419, 460
DdeI CTNAG 8 cut(s) 258, 270, 288, 434, 519, 735, 763, 771
DriI GACNNNNNGTC 1 cut(s) 790
Eam1105I GACNNNNNGTC 1 cut(s) 790
Ecl136II GAGCTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 420
Eco32I GATATC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 281
Esp3I CGTCTC 2 cut(s) 402, 443
FaiI YATR 3 cut(s) 387, 459, 620
Fnu4HI GCNGC 3 cut(s) 345, 348, 846
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 3 cut(s) 345, 348, 846
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 3 cut(s) 38, 61, 216
GluI GCNGC 3 cut(s) 345, 348, 846
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 2 cut(s) 63, 218
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 218, 507, 677, 742
HgaI GACGC 2 cut(s) 419, 460
HhaI GCGC 3 cut(s) 39, 62, 217
Hin6I GCGC 3 cut(s) 37, 60, 215
HinP1I GCGC 3 cut(s) 37, 60, 215
HinfI GANTC 3 cut(s) 503, 559, 773
HpaII CCGG 4 cut(s) 218, 507, 677, 742
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 7 cut(s) 10, 109, 402, 766, 778, 796, 823
Hpy188III TCNNGA 4 cut(s) 142, 416, 606, 655
Hpy8I GTNNAC 1 cut(s) 593
Hpy99I CGWCG 2 cut(s) 14, 17
HpyAV CCTTC 7 cut(s) 70, 145, 220, 229, 373, 603, 835
HpyCH4III ACNGT 4 cut(s) 104, 625, 652, 812
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 344, 460
HpyF3I CTNAG 8 cut(s) 258, 270, 288, 434, 519, 735, 763, 771
HspAI GCGC 3 cut(s) 37, 60, 215
LguI GCTCTTC 2 cut(s) 84, 269
LmnI GCTCC 3 cut(s) 57, 284, 418
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 3 cut(s) 24, 244, 731
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 513, 646
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 1 cut(s) 283
MlyI GAGTC 3 cut(s) 512, 568, 782
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 7 cut(s) 16, 312, 325, 363, 517, 520, 721
MseI TTAA 2 cut(s) 222, 850
MspI CCGG 4 cut(s) 218, 507, 677, 742
MspR9I CCNGG 2 cut(s) 396, 677
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 133, 344, 460
NciI CCSGG 1 cut(s) 677
NlaIV GGNNCC 2 cut(s) 106, 468
NmeAIII GCCGAG 1 cut(s) 231
NruI TCGCGA 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 38
PciSI GCTCTTC 2 cut(s) 84, 269
PflFI GACNNNGTC 1 cut(s) 772
PkrI GCNGC 3 cut(s) 346, 349, 847
PleI GAGTC 3 cut(s) 511, 567, 781
PpsI GAGTC 3 cut(s) 511, 567, 781
Psp124BI GAGCTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 106, 468
PstNI CAGNNNCTG 3 cut(s) 344, 650, 770
PsyI GACNNNGTC 1 cut(s) 772
RruI TCGCGA 1 cut(s) 143
SacI GAGCTC 1 cut(s) 281
SapI GCTCTTC 2 cut(s) 84, 269
SaqAI TTAA 2 cut(s) 222, 850
SatI GCNGC 3 cut(s) 345, 348, 846
SchI GAGTC 3 cut(s) 512, 568, 782
ScrFI CCNGG 2 cut(s) 396, 677
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 3 cut(s) 24, 244, 731
SfcI CTRYAG 1 cut(s) 597
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 347
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 394, 675
TaaI ACNGT 4 cut(s) 104, 625, 652, 812
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 222, 850
Tru9I TTAA 2 cut(s) 222, 850
TscAI CASTG 2 cut(s) 345, 360
TseI GCWGC 2 cut(s) 344, 845
TspDTI ATGAA 2 cut(s) 771, 813
TspRI CASTG 2 cut(s) 345, 360
Tth111I GACNNNGTC 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.