Rw6G037370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013929
Physical Location & Seq
Forward (+)
61712059 .. 61713927
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037370.1

Sequence Viewer

Length: 852 bp
ATGGCCTCCGACGACGACGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGTGGCAATAGCGAAGCCGAAGGTGAAGAAAGAAGAGCTCAATAACGGTTCTGATAGCCCAAAGCCCAAGCCCAGAAACCCACTTGTGAAAAAGCAAGAGAAGCAGAACGAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGATGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCTAAGGCCGATAAGAGAAAGAGAGAAGAGGCGGCGGCGACACCGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTACCTGGTCAGAAGAGAGACGCTCCTGCAGAGAGAGACCCACTAAGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGGCTGATGGAGTCGGGTTTGCTACCTAAAGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAATAGTCGTCACCTTCAAAAAATCAGTTCTCCAATTAAAGCTGTAGCTTCTGGAAGGAAGACCACAACAGTCAGTACTACAAATAGAGGTGGATCTTCTGTAAAGAAGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCAGCATCCAAGGGTGCATCAAATCTGTCTAAGAAGCGGAAGAAAAATGATGAAAGCTCAGAGAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.54

Weight (kDa)

9.83

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 43, 338, 341, 766
AclWI GGATC 2 cut(s) 34, 649
AfaI GTAC 1 cut(s) 625
AgsI TTSAA 1 cut(s) 566
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 8 cut(s) 112, 290, 300, 460, 590, 596, 786, 848
AluI AGCT 8 cut(s) 112, 290, 300, 460, 590, 596, 786, 848
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 396, 414, 437, 820
AlwI GGATC 2 cut(s) 34, 649
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 2 cut(s) 3, 312
ApeKI GCWGC 2 cut(s) 457, 845
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 109, 551
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 3 cut(s) 258, 614, 662
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 469
BccI CCATC 1 cut(s) 487
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 4 cut(s) 396, 414, 437, 820
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 411, 591
BisI GCNGC 4 cut(s) 339, 342, 458, 846
BlsI GCNGC 4 cut(s) 340, 343, 459, 847
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 390, 701
BmeRI GACNNNNNGTC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 390, 701
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 743, 755
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 3 cut(s) 258, 614, 662
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpuMI CCSGG 1 cut(s) 701
BsaI GGTCTC 2 cut(s) 414, 820
BsaJI CCNNGG 2 cut(s) 699, 738
BsaWI WCCGGW 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 699, 738
BseGI GGATG 1 cut(s) 734
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 533
BseXI GCAGC 1 cut(s) 469
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 314
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 350, 701
BsmAI GTCTC 4 cut(s) 396, 414, 437, 820
BsmBI CGTCTC 2 cut(s) 396, 437
BsnI GGCC 2 cut(s) 5, 314
Bso31I GGTCTC 2 cut(s) 414, 820
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 39, 641
BspACI CCGC 4 cut(s) 43, 338, 341, 766
BspANI GGCC 2 cut(s) 5, 314
BspCNI CTCAG 1 cut(s) 800
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 2 cut(s) 34, 649
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 414, 820
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 699, 738
BssMI GATC 2 cut(s) 39, 641
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 3 cut(s) 122, 619, 676
Bst6I CTCTTC 4 cut(s) 102, 327, 356, 392
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 6 cut(s) 291, 309, 428, 759, 787, 849
BstF5I GGATG 1 cut(s) 734
BstKTI GATC 2 cut(s) 42, 644
BstMAI GTCTC 4 cut(s) 396, 414, 437, 820
BstMBI GATC 2 cut(s) 39, 641
BstMWI GCNNNNNNNGC 3 cut(s) 175, 454, 792
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 388, 699
BstSFI CTRYAG 2 cut(s) 411, 591
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 3 cut(s) 258, 614, 662
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 2 cut(s) 5, 314
BtgZI GCGATG 2 cut(s) 204, 285
BtsCI GGATG 1 cut(s) 734
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 843
CaiI CAGNNNCTG 1 cut(s) 674
CseI GACGC 2 cut(s) 413, 454
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 1 cut(s) 624
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 6 cut(s) 291, 309, 428, 759, 787, 849
DpnI GATC 2 cut(s) 41, 643
DpnII GATC 2 cut(s) 39, 641
DriI GACNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 4 cut(s) 102, 327, 356, 392
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 4 cut(s) 102, 327, 356, 392
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 2 cut(s) 414, 820
Eco32I GATATC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 738
Esp3I CGTCTC 2 cut(s) 396, 437
FaiI YATR 2 cut(s) 381, 453
Fnu4HI GCNGC 4 cut(s) 339, 342, 458, 846
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 4 cut(s) 339, 342, 458, 846
FspBI CTAG 1 cut(s) 287
GluI GCNGC 4 cut(s) 339, 342, 458, 846
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 5, 314
HapII CCGG 2 cut(s) 350, 701
HgaI GACGC 2 cut(s) 413, 454
HinfI GANTC 2 cut(s) 497, 797
HpaII CCGG 2 cut(s) 350, 701
HphI GGTGA 2 cut(s) 109, 551
Hpy188I TCNGA 6 cut(s) 10, 127, 396, 790, 802, 823
Hpy188III TCNNGA 2 cut(s) 600, 679
Hpy99I CGWCG 3 cut(s) 14, 17, 20
HpyAV CCTTC 5 cut(s) 88, 241, 367, 572, 597
HpyCH4III ACNGT 3 cut(s) 122, 619, 676
HpyCH4V TGCA 2 cut(s) 413, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 454, 792
HpyF3I CTNAG 6 cut(s) 291, 309, 428, 759, 787, 849
Kzo9I GATC 2 cut(s) 39, 641
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 71, 305, 412
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 2 cut(s) 743, 755
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 557, 670
MalI GATC 2 cut(s) 41, 643
MboI GATC 2 cut(s) 39, 641
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 210, 304, 582
MlyI GAGTC 2 cut(s) 506, 806
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 7 cut(s) 16, 328, 357, 511, 514, 629, 718
MseI TTAA 2 cut(s) 243, 585
MspI CCGG 2 cut(s) 350, 701
MspR9I CCNGG 2 cut(s) 390, 701
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 175, 454, 792
NciI CCSGG 1 cut(s) 701
NdeII GATC 2 cut(s) 39, 641
NmuCI GTSAC 1 cut(s) 557
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 267
PkrI GCNGC 4 cut(s) 340, 343, 459, 847
PleI GAGTC 2 cut(s) 505, 805
PpsI GAGTC 2 cut(s) 505, 805
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 388
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 243, 585
SatI GCNGC 4 cut(s) 339, 342, 458, 846
Sau3AI GATC 2 cut(s) 39, 641
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 2 cut(s) 506, 806
ScrFI CCNGG 2 cut(s) 390, 701
SduI GDGCHC 1 cut(s) 114
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 2 cut(s) 743, 755
SfcI CTRYAG 2 cut(s) 411, 591
Sse9I AATT 3 cut(s) 210, 304, 582
SsiI CCGC 4 cut(s) 43, 338, 341, 766
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 388, 699
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 3 cut(s) 122, 619, 676
TasI AATT 3 cut(s) 210, 304, 582
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 341, 344
Tru1I TTAA 2 cut(s) 243, 585
Tru9I TTAA 2 cut(s) 243, 585
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 457, 845
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 210, 795
TspRI CASTG 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.