Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Reverse (-)

7020664 .. 7023162

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCGAAACTGAGACACTCGCGATTTCAAGCGAGGAAATGGTCGACATTGATGCTGGTTCTGTTTATGTTGTTTATGTTAACGATTGTTCTCTTAATGCTTTTGGCTTTCGGAGTTTTCTCTCTTCCTATTAACAACGATGAATCCTCTCCTATCGATCTCTCTTATTTCCGACGAGCTGCCACTGAGAGAAGTGAAGGACTTGGGAAGAGAGGAGACCAGTGGACTGAAGTGCTTTCTTGGGAACCTAGAGCTTTTGTCTACCACAATTTCTTGTCGAAGGAAGAATGTGAATATTTAATCAGTCTTGCAAAACCACATATGGTGAAGTCAACTGTTGTAGATAGCGAAACCGGCAAGAGCAAAGATAGCAGGGTGCGAACAAGCTCAGGGACTTTCCTTAGGAGAGGAAGGGACAAAATCATTAAGACCATTGAGAAAAGAATAGCAGATTACACCTTTATTCCTGCAGATCATGGTGAAGGACTTCAAGTTCTTCACTACGAAGCAGGGCAAAAGTATGAACCACACTATGATTATTTTGTTGATGAGTTCAACACTAAAAATGGAGGTCAACGGATGGCTACAATGCTTATGTATCTGTCGGATGTTGAGGAAGGCGGTGAAACAGTGTTTCCTGCTGCCAATATGAATTTTAGTTCTGTACCATGGTATAATGAGCTCTCTGAGTGTGGGAAAAAGGGACTTTCCGTAAAGCCGAGAATGGGTGATGCATTGCTTTTCTGGAGCATGAGGCCTGATGCTACACTAGATCCTACAAGTTTGCATGGTGGATGTCCTGTGATTAGAGGGAACAAGTGGTCATCTACCAAATGGATGCATGTTGGCGAGTACAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

287

Amino Acids

32.87

Weight (kDa)

8.61

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	44, 261
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	1 cut(s)	767
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	666, 854
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	3 cut(s)	29, 491, 556
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	4 cut(s)	179, 254, 387, 682
AluI	AGCT	4 cut(s)	179, 254, 387, 682
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	7, 210
AlwI	GGATC	1 cut(s)	767
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	2 cut(s)	179, 641
ApoI	RAATTY	1 cut(s)	652
Asp700I	GAANNNNTTC	1 cut(s)	486
AsuHPI	GGTGA	4 cut(s)	337, 491, 635, 740
AxyI	CCTNAGG	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	166, 628
BccI	CCATC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcoDI	GTCTC	2 cut(s)	7, 210
BfaI	CTAG	3 cut(s)	249, 770, 862
BfmI	CTRYAG	1 cut(s)	468
BisI	GCNGC	2 cut(s)	180, 642
BlsI	GCNGC	2 cut(s)	181, 643
BmiI	GGNNCC	1 cut(s)	246
BmsI	GCATC	4 cut(s)	42, 721, 751, 828
BpmI	CTGGAG	1 cut(s)	766
Bpu10I	CCTNAGC	1 cut(s)	388
Bsa29I	ATCGAT	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	734
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	668
BseGI	GGATG	4 cut(s)	585, 613, 800, 843
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	3 cut(s)	177, 402, 678
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	166, 628
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	3 cut(s)	406, 428, 717
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	7, 210
BsmFI	GGGAC	3 cut(s)	406, 428, 717
BsnI	GGCC	1 cut(s)	757
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	157, 472, 772
Bsp19I	CCATGG	1 cut(s)	668
Bsp68I	TCGCGA	1 cut(s)	22
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	3 cut(s)	178, 401, 679
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	3 cut(s)	157, 472, 772
BssT1I	CCWWGG	1 cut(s)	668
Bst4CI	ACNGT	2 cut(s)	337, 631
Bst6I	CTCTTC	2 cut(s)	129, 203
BstDEI	CTNAG	5 cut(s)	11, 186, 388, 401, 687
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	4 cut(s)	585, 613, 800, 843
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	3 cut(s)	160, 475, 775
BstMAI	GTCTC	2 cut(s)	7, 210
BstMBI	GATC	3 cut(s)	157, 472, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 369
BstNSI	RCATGY	1 cut(s)	845
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	166, 628
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu15I	ATCGAT	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	757
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	668
BtsCI	GGATG	4 cut(s)	585, 613, 800, 843
BtsIMutI	CAGTG	3 cut(s)	183, 227, 636
BtuMI	TCGCGA	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	665, 853
CviAII	CATG	5 cut(s)	476, 669, 751, 788, 842
CviJI	RGCY	8 cut(s)	107, 179, 254, 387, 584, 682, 718, 757
CviKI_1	RGCY	8 cut(s)	107, 179, 254, 387, 584, 682, 718, 757
CviQI	GTAC	2 cut(s)	665, 853
DdeI	CTNAG	5 cut(s)	11, 186, 388, 401, 687
DpnI	GATC	3 cut(s)	159, 474, 774
DpnII	GATC	3 cut(s)	157, 472, 772
Eam1104I	CTCTTC	2 cut(s)	129, 203
EarI	CTCTTC	2 cut(s)	129, 203
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	668
EcoT22I	ATGCAT	2 cut(s)	736, 843
EcoT38I	GRGCYC	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	668
FaeI	CATG	5 cut(s)	479, 672, 754, 791, 845
FaqI	GGGAC	3 cut(s)	406, 428, 717
FatI	CATG	5 cut(s)	475, 668, 750, 787, 841
FauNDI	CATATG	1 cut(s)	321
FblI	GTMKAC	2 cut(s)	44, 261
Fnu4HI	GCNGC	2 cut(s)	180, 642
FokI	GGATG	4 cut(s)	592, 620, 807, 850
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	180, 642
FspBI	CTAG	3 cut(s)	249, 770, 862
GluI	GCNGC	2 cut(s)	180, 642
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	5 cut(s)	479, 672, 754, 791, 845
HincII	GTYRAC	4 cut(s)	45, 81, 333, 575
HindII	GTYRAC	4 cut(s)	45, 81, 333, 575
HinfI	GANTC	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	4 cut(s)	337, 491, 635, 740
Hpy166II	GTNNAC	6 cut(s)	45, 81, 225, 262, 333, 575
Hpy188I	TCNGA	4 cut(s)	113, 173, 607, 688
Hpy188III	TCNNGA	2 cut(s)	21, 745
Hpy8I	GTNNAC	6 cut(s)	45, 81, 225, 262, 333, 575
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	5 cut(s)	191, 274, 405, 476, 611
HpyCH4III	ACNGT	2 cut(s)	337, 631
HpyCH4V	TGCA	5 cut(s)	311, 470, 734, 787, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 369
HpyF3I	CTNAG	5 cut(s)	11, 186, 388, 401, 687
Hsp92II	CATG	5 cut(s)	479, 672, 754, 791, 845
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	157, 472, 772
LmnI	GCTCC	1 cut(s)	747
Lsp1109I	GCAGC	2 cut(s)	166, 628
LweI	GCATC	4 cut(s)	42, 721, 751, 828
MaeI	CTAG	3 cut(s)	249, 770, 862
MalI	GATC	3 cut(s)	159, 474, 774
MboI	GATC	3 cut(s)	157, 472, 772
MboII	GAAGA	4 cut(s)	116, 220, 296, 488
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	2 cut(s)	268, 652
MmeI	TCCRAC	2 cut(s)	196, 585
MnlI	CCTC	8 cut(s)	27, 157, 206, 401, 563, 607, 747, 803
Mph1103I	ATGCAT	2 cut(s)	736, 843
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	5 cut(s)	80, 95, 132, 299, 426
MspI	CCGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	354, 369
NcoI	CCATGG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	3 cut(s)	157, 472, 772
NlaIII	CATG	5 cut(s)	479, 672, 754, 791, 845
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	744
NruI	TCGCGA	1 cut(s)	22
NsiI	ATGCAT	2 cut(s)	736, 843
NspI	RCATGY	1 cut(s)	845
PceI	AGGCCT	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	181, 643
Psp124BI	GAGCTC	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	772
RruI	TCGCGA	1 cut(s)	22
RsaI	GTAC	2 cut(s)	666, 854
RsaNI	GTAC	2 cut(s)	665, 853
SacI	GAGCTC	1 cut(s)	684
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	5 cut(s)	80, 95, 132, 299, 426
SatI	GCNGC	2 cut(s)	180, 642
Sau3AI	GATC	3 cut(s)	157, 472, 772
SduI	GDGCHC	1 cut(s)	684
SetI	ASST	7 cut(s)	181, 250, 256, 389, 461, 574, 684
SfaNI	GCATC	4 cut(s)	42, 721, 751, 828
SfcI	CTRYAG	1 cut(s)	468
Sse9I	AATT	2 cut(s)	268, 652
SseBI	AGGCCT	1 cut(s)	757
SsiI	CCGC	1 cut(s)	621
SspI	AATATT	1 cut(s)	296
SspMI	CTAG	3 cut(s)	249, 770, 862
SstI	GAGCTC	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	2 cut(s)	337, 631
TaqI	TCGA	3 cut(s)	44, 156, 278
TasI	AATT	2 cut(s)	268, 652
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	5 cut(s)	80, 95, 132, 299, 426
Tru9I	TTAA	5 cut(s)	80, 95, 132, 299, 426
TscAI	CASTG	3 cut(s)	190, 227, 636
TseI	GCWGC	2 cut(s)	179, 641
TspDTI	ATGAA	3 cut(s)	156, 537, 665
TspGWI	ACGGA	2 cut(s)	592, 700
TspRI	CASTG	3 cut(s)	190, 227, 636
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	1 cut(s)	845
XmiI	GTMKAC	2 cut(s)	44, 261
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	3 cut(s)	249, 770, 862
Zsp2I	ATGCAT	2 cut(s)	736, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.