Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8483733.1

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1956

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8483733.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 649 bp

atgccaattaggttttggtttccgatcagagctttgaggttcggagctcgtggttcaacaatggcgaaggggaggtacggcggccggttacggagctcgaaatggtcgacgttcacgctcgtcttgtcgatgctgttcatgctgacggtggtgcttctgatgctcatggccttcggaatcgtgtcgcttccggagagcaccgacgactcctcgccgaacgatctcagttccttccgccgcaggatcgttgagagaagcgagggattggggaagagagagaagcagtggaccgaagtgatctcttgggagcccagagctttcatatatcacaatttcttgtccaaggaagaatgcgactacttgataaagcttgctgcacctcacatggcaaagtcgactgttgtcgatagcaagactgggaagagcaaagatagtagggtccgaacaagctctggcacgtttcttaggagaggacgtgataaagtagttagggatattgaaaagagaatagcagacttcacttttattcctgtagagcatggagaaggacttcaaattctccactatgaagttggacagaagtacgatgcacattttgattacttccttgatgagttcaacaccaagaatggaggccaacggattgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

216

Amino Acids

24.89

Weight (kDa)

9.82

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	107, 395
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	3 cut(s)	81, 235, 238
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	2 cut(s)	77, 584
AgsI	TTSAA	4 cut(s)	57, 500, 554, 619
AjiI	CACGTC	1 cut(s)	476
AluBI	AGCT	6 cut(s)	32, 47, 96, 317, 370, 450
AluI	AGCT	6 cut(s)	32, 47, 96, 317, 370, 450
Alw21I	GWGCWC	3 cut(s)	49, 98, 200
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	3 cut(s)	82, 168, 634
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	288, 439
AvaII	GGWCC	2 cut(s)	288, 439
BanII	GRGCYC	3 cut(s)	49, 98, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	3 cut(s)	49, 98, 200
BbvI	GCAGC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	94
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	3 cut(s)	82, 238, 375
BlsI	GCNGC	3 cut(s)	83, 239, 376
Bme18I	GGWCC	2 cut(s)	288, 439
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	288, 439
BmiI	GGNNCC	2 cut(s)	309, 440
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	120, 150, 577
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	199
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	84, 170, 636
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	3 cut(s)	49, 98, 200
BsiSI	CCGG	2 cut(s)	85, 191
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	84, 170, 636
Bsp1286I	GDGCHC	4 cut(s)	49, 98, 200, 312
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	24, 220, 243, 297
BspACI	CCGC	3 cut(s)	81, 235, 238
BspANI	GGCC	3 cut(s)	84, 170, 636
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	309, 440
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	24, 220, 243, 297
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	148, 400
Bst6I	CTCTTC	2 cut(s)	266, 416
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	224, 464
BstKTI	GATC	4 cut(s)	27, 223, 246, 300
BstMBI	GATC	4 cut(s)	24, 220, 243, 297
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 160
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	84, 170, 636
BtrI	CACGTC	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	288, 439
Csp6I	GTAC	2 cut(s)	76, 583
CviAII	CATG	4 cut(s)	139, 166, 385, 539
CviQI	GTAC	2 cut(s)	76, 583
DdeI	CTNAG	2 cut(s)	224, 464
DpnI	GATC	4 cut(s)	26, 222, 245, 299
DpnII	GATC	4 cut(s)	24, 220, 243, 297
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	266, 416
EarI	CTCTTC	2 cut(s)	266, 416
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	47, 96
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	3 cut(s)	49, 98, 312
Eco47I	GGWCC	2 cut(s)	288, 439
Eco52I	CGGCCG	1 cut(s)	82
Eco53kI	GAGCTC	2 cut(s)	47, 96
EcoICRI	GAGCTC	2 cut(s)	47, 96
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	3 cut(s)	49, 98, 312
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	4 cut(s)	142, 169, 388, 542
FaiI	YATR	7 cut(s)	140, 167, 323, 325, 386, 540, 567
FatI	CATG	4 cut(s)	138, 165, 384, 538
FblI	GTMKAC	2 cut(s)	107, 395
Fnu4HI	GCNGC	3 cut(s)	82, 238, 375
FriOI	GRGCYC	3 cut(s)	49, 98, 312
Fsp4HI	GCNGC	3 cut(s)	82, 238, 375
GluI	GCNGC	3 cut(s)	82, 238, 375
HaeIII	GGCC	3 cut(s)	84, 170, 636
HapII	CCGG	2 cut(s)	85, 191
Hin1II	CATG	4 cut(s)	142, 169, 388, 542
HincII	GTYRAC	2 cut(s)	108, 396
HindII	GTYRAC	2 cut(s)	108, 396
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	177, 206
HpaII	CCGG	2 cut(s)	85, 191
Hpy166II	GTNNAC	4 cut(s)	108, 114, 288, 396
Hpy188I	TCNGA	6 cut(s)	24, 29, 44, 159, 176, 443
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	4 cut(s)	108, 114, 288, 396
Hpy99I	CGWCG	2 cut(s)	112, 206
HpyAV	CCTTC	4 cut(s)	61, 181, 241, 539
HpyCH4III	ACNGT	2 cut(s)	148, 400
HpyCH4IV	ACGT	3 cut(s)	110, 458, 475
HpyCH4V	TGCA	2 cut(s)	377, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 160
HpyF3I	CTNAG	2 cut(s)	224, 464
HpySE526I	ACGT	3 cut(s)	110, 458, 475
Hsp92II	CATG	4 cut(s)	142, 169, 388, 542
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	24, 220, 243, 297
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	3 cut(s)	44, 93, 307
LpnPI	CCDG	7 cut(s)	98, 204, 226, 325, 402, 438, 543
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	3 cut(s)	120, 150, 577
MaeII	ACGT	3 cut(s)	110, 458, 475
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	4 cut(s)	26, 222, 245, 299
MboI	GATC	4 cut(s)	24, 220, 243, 297
MboII	GAAGA	3 cut(s)	283, 359, 433
MhlI	GDGCHC	4 cut(s)	49, 98, 200, 312
MluCI	AATT	3 cut(s)	6, 331, 555
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	7 cut(s)	30, 66, 220, 253, 390, 464, 626
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	549
MspI	CCGG	2 cut(s)	85, 191
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	139, 160
NdeII	GATC	4 cut(s)	24, 220, 243, 297
NlaIII	CATG	4 cut(s)	142, 169, 388, 542
NlaIV	GGNNCC	2 cut(s)	309, 440
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	83, 239, 376
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	401
Psp124BI	GAGCTC	2 cut(s)	49, 98
PspN4I	GGNNCC	2 cut(s)	309, 440
PspPI	GGNCC	2 cut(s)	288, 439
RsaI	GTAC	2 cut(s)	77, 584
RsaNI	GTAC	2 cut(s)	76, 583
SacI	GAGCTC	2 cut(s)	49, 98
SalI	GTCGAC	2 cut(s)	106, 394
SapI	GCTCTTC	1 cut(s)	416
SatI	GCNGC	3 cut(s)	82, 238, 375
Sau3AI	GATC	4 cut(s)	24, 220, 243, 297
Sau96I	GGNCC	2 cut(s)	288, 439
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	4 cut(s)	49, 98, 200, 312
SfaNI	GCATC	3 cut(s)	120, 150, 577
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	288, 439
Sse9I	AATT	3 cut(s)	6, 331, 555
SsiI	CCGC	3 cut(s)	81, 235, 238
SstI	GAGCTC	2 cut(s)	49, 98
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	148, 400
TaiI	ACGT	3 cut(s)	113, 461, 478
TaqI	TCGA	5 cut(s)	98, 107, 128, 395, 405
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	6, 331, 555
TauI	GCSGC	2 cut(s)	84, 240
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	127, 310, 582
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	288, 439
XapI	RAATTY	1 cut(s)	555
XcmI	CCANNNNNNNNNTGG	2 cut(s)	12, 569
XmiI	GTMKAC	2 cut(s)	107, 395
XmnI	GAANNNNTTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.