Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Forward (+)

636796 .. 639371

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1008100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGAAGGGGAGGTACGGTCGGTTGCAGAGCAAGAAATGGTCGACGTTCATGCTCGTCTTGTCGATGCTGTTAATGCTATCGGTGGTGCTTCTCATGCTTCTCGCTTTCGGAACCGTGTCGCTTCCGGTCAGCACCGACGACTCTTCACCTAACGATCTCAGCTCTTTTAGGCGGAAAACCGTCGAGAGAGGTGATGGATTGGGGAATAGAGTAGAGCAGTGGACGGAAGTGATTTCTTGGGAGCCCAGAGCCTTCGTATATCATAATTTCTTGTCCAAGGAAGAATGTGACTACTTGATAAATCTTGCGAAACCTCATATGGTAAAGTCATCGGTTGTTGATAGCAAGACTGGGAAAAGCAAAGATAGTAGGGTGCGCACAAGCTCCGGAATGTTTCTGAAGAGAGGACGCGATAAAATAATTCGGGATATCGAGAAGAGAATAGCAGACTTCACTTTCATTCCTGTAGAGCATGGAGAAGGACTTCAGATTCTCCACTACGAAGTTGGGCAAAAATACGATGCACATTTTGATTACTTCCTAGATGAATTCAACACCAAGAATGGTGGCCAACGGGTTGCTACTCTTTTGATGTATCTGTCAGATGTTGAAGAAGGCGGTGAGACGGTGTTTCCTGCTGCAAAGGGGAATATCAGCTCTGTGCCATGGTGGAATGAATTATCTGAATGTGGTAAACAGGGACTTGCAGTGAAACCTAAAATGGGTGATGCACTACTATTCTGGAGCATGAGGCCCGATGCTACTCTAGACCCGTCAAGTTTGCATGGCAAGCTCTTTTGCACTCTCCGCTCTCTGTTTTTTTGGGTGGATGCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

281

Amino Acids

31.74

Weight (kDa)

8.32

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	163 - 253	6.3e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	414
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	3 cut(s)	175, 621, 811
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	2 cut(s)	422, 473
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	556, 614
AluBI	AGCT	4 cut(s)	165, 387, 660, 796
AluI	AGCT	4 cut(s)	165, 387, 660, 796
Alw26I	GTCTC	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	2 cut(s)	571, 755
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	756
AsuHPI	GGTGA	4 cut(s)	141, 206, 635, 740
BalI	TGGCCA	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	2 cut(s)	545, 770
BfmI	CTRYAG	1 cut(s)	468
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	756
BmiI	GGNNCC	2 cut(s)	115, 246
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	5 cut(s)	57, 514, 721, 751, 823
BmuI	ACTGGG	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	279, 668
BsaWI	WCCGGW	2 cut(s)	127, 389
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	279, 668
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	628
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	573, 757
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	128, 390
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	1 cut(s)	620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	2 cut(s)	573, 757
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	668
BspACI	CCGC	3 cut(s)	175, 621, 811
BspANI	GGCC	2 cut(s)	573, 757
BspCNI	CTCAG	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	115, 246
BsrBI	CCGCTC	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	279, 668
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	2 cut(s)	279, 668
Bst4CI	ACNGT	4 cut(s)	20, 118, 184, 631
Bst6I	CTCTTC	3 cut(s)	151, 398, 434
BstC8I	GCNNGC	1 cut(s)	794
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 97, 793, 810
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	628
BsuRI	GGCC	2 cut(s)	573, 757
BtgI	CCRYGG	1 cut(s)	668
BtsCI	GGATG	1 cut(s)	838
BtsI	GCAGTG	2 cut(s)	227, 717
BtsIMutI	CAGTG	2 cut(s)	227, 717
Cac8I	GCNNGC	1 cut(s)	794
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	756
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	550, 585
CviAII	CATG	6 cut(s)	52, 97, 476, 669, 751, 788
CviJI	RGCY	8 cut(s)	165, 247, 254, 387, 573, 660, 757, 796
CviKI_1	RGCY	8 cut(s)	165, 247, 254, 387, 573, 660, 757, 796
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	3 cut(s)	151, 398, 434
EarI	CTCTTC	3 cut(s)	151, 398, 434
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	279, 668
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	422, 473
EcoRI	GAATTC	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	279, 668
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	279, 668
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	6 cut(s)	55, 100, 479, 672, 754, 791
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	6 cut(s)	51, 96, 475, 668, 750, 787
FauNDI	CATATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	642
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	642
FspAI	RTGCGCAY	1 cut(s)	380
FspBI	CTAG	2 cut(s)	545, 770
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	2 cut(s)	573, 757
HapII	CCGG	2 cut(s)	128, 390
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	6 cut(s)	55, 100, 479, 672, 754, 791
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	143, 493
HpaII	CCGG	2 cut(s)	128, 390
HphI	GGTGA	4 cut(s)	141, 206, 635, 740
Hpy166II	GTNNAC	3 cut(s)	45, 225, 698
Hpy188I	TCNGA	5 cut(s)	113, 402, 492, 607, 688
Hpy188III	TCNNGA	6 cut(s)	187, 390, 428, 436, 745, 770
Hpy8I	GTNNAC	3 cut(s)	45, 225, 698
Hpy99I	CGWCG	3 cut(s)	49, 143, 188
HpyAV	CCTTC	3 cut(s)	265, 476, 611
HpyCH4III	ACNGT	4 cut(s)	20, 118, 184, 631
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	7 cut(s)	28, 527, 644, 710, 734, 787, 804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 97, 793, 810
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	55, 100, 479, 672, 754, 791
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	244, 392, 747
LpnPI	CCDG	8 cut(s)	141, 262, 339, 403, 480, 651, 686, 730
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	5 cut(s)	57, 514, 721, 751, 823
MaeI	CTAG	2 cut(s)	545, 770
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	1 cut(s)	157
MboII	GAAGA	5 cut(s)	138, 296, 415, 451, 626
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	4 cut(s)	268, 423, 551, 680
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	6, 185, 327, 401, 747
Mox20I	TGGCCA	1 cut(s)	573
MroI	TCCGGA	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	573
MspI	CCGG	2 cut(s)	128, 390
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	76, 97, 793, 810
NcoI	CCATGG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	6 cut(s)	55, 100, 479, 672, 754, 791
NlaIV	GGNNCC	2 cut(s)	115, 246
NmuCI	GTSAC	1 cut(s)	290
NsbI	TGCGCA	1 cut(s)	380
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	115, 246
PspPI	GGNCC	1 cut(s)	756
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	756
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	5 cut(s)	57, 514, 721, 751, 823
SfcI	CTRYAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	268, 423, 551, 680
SsiI	CCGC	3 cut(s)	175, 621, 811
SspMI	CTAG	2 cut(s)	545, 770
StyI	CCWWGG	2 cut(s)	279, 668
TaaI	ACNGT	4 cut(s)	20, 118, 184, 631
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	4 cut(s)	44, 65, 186, 435
TasI	AATT	4 cut(s)	268, 423, 551, 680
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	2 cut(s)	227, 717
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	40, 451, 564, 693
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	227, 717
XapI	RAATTY	1 cut(s)	551
XbaI	TCTAGA	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	545, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.