Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Forward (+)

325410 .. 326915

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00560.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCAAGGGGAGGTACGGTCGGTTGCAGAGCAAGAAATGGTCGGCGTTCACGCTCGTCTTGTCGATGCTGTTCGTGCTGTCGGTGGTGCTTCTCATGCTTCTCGCTTTTGGAATCGTGTCGCTTCCGGTCAGCACCGACGGCTCTTCACCTAACGATCTCAGCTCCTTTAGGCGGAAGATCGTCGAGAGAAGTGATGGATTGGGGAATAGAGGAGAGCAGTGGACGGAAGTGATTTCTTGGGAGCCCAGAGCCTTCATATATCACAATTTCTTGTCCAAGGAAGAATGTGACTACTTAATTAATCTCGCTAAACCTCATATGGTAAAGTCAACTGTCGTTGATAGCAAGACTGGGAAAAGCAGAGACAGTAGCGTGCGCACAAGCTCCGGAATGTTTCTGAGGAGAGGACGCGATAAAATAATCAGGGATATCGAGAAGAAAATAGCAGACTTCACTTTCATACCCGTAGAGCATGGGGAAGGACTTCAGGTTCTCCACTATGAAGTTGGGCAGAAATACGATGCGCATTTTGATTACTTCGCAGATGAGTTCAACACCAAGAATGGCGGACAACGGGTTGCAACTCTTTTGATGTATCTGTCAGATGTTGAACAAGGCGGTGAGACGGTGTTTCCTACTGCAAAGGGGAGTATCAGCTCTGTGCCATGGTGGAATGAATTATCTGAATGTGGTAAACAGGGACTTGCAGTGAAACCTAAAATGGGTGATGCATTACTGTTCTGGAGCATGACTCCTGATGCTACTCTAGACCCGTCAAGTTTGCACGGTGCATGCCCTGTGATAAGGGGTAACAAGTGGTCGTGTACAAAGTGGATGCATCTTCAAGAGTACAAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

288

Amino Acids

32.33

Weight (kDa)

8.76

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	380, 528
AccII	CGCG	1 cut(s)	414
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	3 cut(s)	175, 570, 621
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	3 cut(s)	17, 829, 854
AfiI	CCNNNNNNNGG	3 cut(s)	12, 174, 725
AgsI	TTSAA	3 cut(s)	556, 614, 848
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	165, 387, 660
AluI	AGCT	3 cut(s)	165, 387, 660
Alw26I	GTCTC	2 cut(s)	360, 620
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	381, 529
AsuHPI	GGTGA	3 cut(s)	141, 635, 740
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	249
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	360, 620
BfaI	CTAG	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	6 cut(s)	57, 514, 721, 751, 828, 850
BmuI	ACTGGG	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	1 cut(s)	766
BsaJI	CCNNGG	3 cut(s)	6, 279, 668
BsaWI	WCCGGW	2 cut(s)	127, 389
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 174, 725
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	6, 279, 668
BseGI	GGATG	1 cut(s)	843
BseLI	CCNNNNNNNGG	3 cut(s)	12, 174, 725
BseMII	CTCAG	2 cut(s)	175, 392
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	228, 418
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	128, 390
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	3 cut(s)	12, 174, 725
BsmAI	GTCTC	2 cut(s)	360, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	827
Bsp143I	GATC	2 cut(s)	157, 180
Bsp19I	CCATGG	1 cut(s)	668
BspACI	CCGC	3 cut(s)	175, 570, 621
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	174, 393
BspEI	TCCGGA	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	6, 279, 668
BssMI	GATC	2 cut(s)	157, 180
BssT1I	CCWWGG	3 cut(s)	6, 279, 668
Bst4CI	ACNGT	6 cut(s)	20, 337, 371, 631, 741, 791
Bst6I	CTCTTC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	377, 796
BstDEI	CTNAG	2 cut(s)	161, 401
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	843
BstFNI	CGCG	1 cut(s)	414
BstHHI	GCGC	2 cut(s)	381, 529
BstKTI	GATC	2 cut(s)	160, 183
BstMAI	GTCTC	2 cut(s)	360, 620
BstMBI	GATC	2 cut(s)	157, 180
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 97, 141
BstNSI	RCATGY	1 cut(s)	798
BstUI	CGCG	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	668
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	2 cut(s)	227, 717
BtsIMutI	CAGTG	2 cut(s)	227, 717
Cac8I	GCNNGC	2 cut(s)	377, 796
CfoI	GCGC	2 cut(s)	381, 529
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	3 cut(s)	16, 828, 853
CviAII	CATG	5 cut(s)	97, 476, 669, 751, 795
CviJI	RGCY	7 cut(s)	5, 144, 165, 247, 254, 387, 660
CviKI_1	RGCY	7 cut(s)	5, 144, 165, 247, 254, 387, 660
CviQI	GTAC	3 cut(s)	16, 828, 853
DdeI	CTNAG	2 cut(s)	161, 401
DpnI	GATC	2 cut(s)	159, 182
DpnII	GATC	2 cut(s)	157, 180
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
EciI	GGCGGA	2 cut(s)	190, 585
Eco130I	CCWWGG	3 cut(s)	6, 279, 668
Eco24I	GRGCYC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	473
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	3 cut(s)	6, 279, 668
EcoT22I	ATGCAT	2 cut(s)	736, 843
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	6, 279, 668
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	100, 479, 672, 754, 798
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	5 cut(s)	96, 475, 668, 750, 794
FauNDI	CATATG	1 cut(s)	321
FokI	GGATG	1 cut(s)	850
FriOI	GRGCYC	1 cut(s)	249
FspAI	RTGCGCAY	2 cut(s)	380, 528
FspBI	CTAG	1 cut(s)	770
FspI	TGCGCA	2 cut(s)	380, 528
GlaI	GCGC	2 cut(s)	380, 528
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	128, 390
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	2 cut(s)	381, 529
Hin1II	CATG	5 cut(s)	100, 479, 672, 754, 798
Hin6I	GCGC	2 cut(s)	379, 527
HinP1I	GCGC	2 cut(s)	379, 527
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	2 cut(s)	114, 754
HpaII	CCGG	2 cut(s)	128, 390
HphI	GGTGA	3 cut(s)	141, 635, 740
Hpy166II	GTNNAC	5 cut(s)	51, 225, 333, 698, 828
Hpy188I	TCNGA	3 cut(s)	402, 607, 688
Hpy188III	TCNNGA	7 cut(s)	187, 390, 436, 745, 758, 770, 848
Hpy8I	GTNNAC	5 cut(s)	51, 225, 333, 698, 828
Hpy99I	CGWCG	2 cut(s)	143, 188
HpyAV	CCTTC	2 cut(s)	265, 476
HpyCH4III	ACNGT	6 cut(s)	20, 337, 371, 631, 741, 791
HpyCH4V	TGCA	8 cut(s)	28, 584, 644, 710, 734, 787, 794, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 97, 141
HpyF3I	CTNAG	2 cut(s)	161, 401
Hsp92II	CATG	5 cut(s)	100, 479, 672, 754, 798
HspAI	GCGC	2 cut(s)	379, 527
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	157, 180
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	4 cut(s)	170, 244, 392, 747
LweI	GCATC	6 cut(s)	57, 514, 721, 751, 828, 850
MaeI	CTAG	1 cut(s)	770
MaeIII	GTNAC	2 cut(s)	290, 812
MalI	GATC	2 cut(s)	159, 182
MboI	GATC	2 cut(s)	157, 180
MboII	GAAGA	5 cut(s)	138, 190, 296, 451, 836
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	268, 300, 680
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	748
MnlI	CCTC	5 cut(s)	6, 206, 327, 396, 401
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	736, 843
MroI	TCCGGA	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	299, 303
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	128, 390
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	76, 97, 141
NcoI	CCATGG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	2 cut(s)	157, 180
NlaIII	CATG	5 cut(s)	100, 479, 672, 754, 798
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	290
NsbI	TGCGCA	2 cut(s)	380, 528
NsiI	ATGCAT	2 cut(s)	736, 843
NspI	RCATGY	1 cut(s)	798
PacI	TTAATTAA	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	798
PciSI	GCTCTTC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	748
PshBI	ATTAAT	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	246
RsaI	GTAC	3 cut(s)	17, 829, 854
RsaNI	GTAC	3 cut(s)	16, 828, 853
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	299, 303
Sau3AI	GATC	2 cut(s)	157, 180
SchI	GAGTC	1 cut(s)	748
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	8 cut(s)	17, 154, 167, 319, 389, 495, 662, 721
SfaNI	GCATC	6 cut(s)	57, 514, 721, 751, 828, 850
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	3 cut(s)	268, 300, 680
SsiI	CCGC	3 cut(s)	175, 570, 621
SspMI	CTAG	1 cut(s)	770
StyI	CCWWGG	3 cut(s)	6, 279, 668
TaaI	ACNGT	6 cut(s)	20, 337, 371, 631, 741, 791
TaqI	TCGA	3 cut(s)	65, 186, 435
TasI	AATT	3 cut(s)	268, 300, 680
TatI	WGTACW	2 cut(s)	827, 852
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	299, 303
Tru9I	TTAA	2 cut(s)	299, 303
TscAI	CASTG	2 cut(s)	227, 717
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	247, 451, 519, 693
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	227, 717
VspI	ATTAAT	1 cut(s)	303
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	770
Zsp2I	ATGCAT	2 cut(s)	736, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.