Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Forward (+)

384798 .. 386722

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1007000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCCAAGGGGAGGTACGGTAGGTTGCAGAGCAAGAAATGGTCTCCGTTCACGCTCGTCTTGTCGATGCTGTTCGTGCTGTCGGTGGTGCTTCTCATGCTCGCTTTTGGAATCGTGTCGCTTCCGGTTAGCACCGACGGCTCTTCACCTAACGATCTCAGCTCCTTTAGGCGGAAGATCGTCGAGAGAAGTGATGGATTGGGGAATAGAGGAGAGCAGTGGACGGAAGTGATTTCTTGGGAGCCCAGAGCCTTCATATATCACAATTTCTTGTCCAAGGATGAATGTGACTACTTAATTAATCTCGCTAAACCTCATATGGTAAAGTCAACTGTTGTTGATAGCGAGACTGGGAAAAGCAAAGACAGTAGCGTGCGCACAAGCTCCGGAATGTTTCTGAGGAGAGGACGCGATAAAATAATTAGGGATATCGAGAAGAGAATAGCAGACTTCACCTTCATACCTGTAGAGCATGGGGAAGGACTTCAGGTTCTCCACTATGAAGTTGGGCAGAAATACGATGCGCATTTTGATTACTTCGCAGATGAGTTCAACACCAAGAATGGCGGACAACGGGTTGCAACTCTTTTGATGTATCTGTCGGATGTTGAAGAAGGCGGTGAGACAGTGTTTCCTACTGCAAAGGGGAGTATCAGCTCTGTGCCATGGTGGAATGAATTATCAGAATGTGGTAAACAGGGACTTGCACTGAAACCTAAAATGGGTGATGCATTACTATTCTGGAGCATGAGGCCTGATGCTACTCTAGACCCGTCAAGTTTGCACGGTGCATGCCCTGTGATAAGGGGTAACAAGTGGTCGTGTACAAAGTGGATGCATCTTCAAGAGTACAAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

287

Amino Acids

32.3

Weight (kDa)

8.25

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	160 - 280	6.8e-08	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	162 - 280	4.9e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	377, 525
AccII	CGCG	1 cut(s)	411
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	3 cut(s)	172, 567, 618
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	17, 826, 851
AfiI	CCNNNNNNNGG	3 cut(s)	12, 171, 722
AgsI	TTSAA	3 cut(s)	553, 611, 845
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
AluBI	AGCT	3 cut(s)	162, 384, 657
AluI	AGCT	3 cut(s)	162, 384, 657
Alw26I	GTCTC	3 cut(s)	48, 341, 617
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	2 cut(s)	3, 752
AseI	ATTAAT	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	2 cut(s)	378, 526
AsuHPI	GGTGA	4 cut(s)	138, 445, 632, 737
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	246
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	3 cut(s)	48, 341, 617
BfaI	CTAG	1 cut(s)	767
BfmI	CTRYAG	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	6 cut(s)	57, 511, 718, 748, 825, 847
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	763
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	6, 276, 665
BsaWI	WCCGGW	2 cut(s)	124, 386
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 171, 722
Bse1I	ACTGG	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	6, 276, 665
BseGI	GGATG	3 cut(s)	286, 610, 840
BseLI	CCNNNNNNNGG	3 cut(s)	12, 171, 722
BseMII	CTCAG	2 cut(s)	172, 389
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	225, 415
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	5, 754
BsiSI	CCGG	2 cut(s)	125, 387
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	3 cut(s)	12, 171, 722
BsmAI	GTCTC	3 cut(s)	48, 341, 617
BsmFI	GGGAC	1 cut(s)	714
BsnI	GGCC	2 cut(s)	5, 754
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	824
Bsp143I	GATC	2 cut(s)	154, 177
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	3 cut(s)	172, 567, 618
BspANI	GGCC	2 cut(s)	5, 754
BspCNI	CTCAG	2 cut(s)	171, 390
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	6, 276, 665
BssMI	GATC	2 cut(s)	154, 177
BssT1I	CCWWGG	3 cut(s)	6, 276, 665
Bst4CI	ACNGT	5 cut(s)	20, 334, 368, 628, 788
Bst6I	CTCTTC	2 cut(s)	148, 431
BstAUI	TGTACA	1 cut(s)	824
BstC8I	GCNNGC	3 cut(s)	102, 374, 793
BstDEI	CTNAG	2 cut(s)	158, 398
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	286, 610, 840
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	378, 526
BstKTI	GATC	2 cut(s)	157, 180
BstMAI	GTCTC	3 cut(s)	48, 341, 617
BstMBI	GATC	2 cut(s)	154, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 97, 138
BstNSI	RCATGY	1 cut(s)	795
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	5, 754
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	3 cut(s)	286, 610, 840
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	3 cut(s)	224, 633, 707
Cac8I	GCNNGC	3 cut(s)	102, 374, 793
CfoI	GCGC	2 cut(s)	378, 526
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	3 cut(s)	16, 825, 850
CviAII	CATG	5 cut(s)	97, 473, 666, 748, 792
CviJI	RGCY	8 cut(s)	5, 141, 162, 244, 251, 384, 657, 754
CviKI_1	RGCY	8 cut(s)	5, 141, 162, 244, 251, 384, 657, 754
CviQI	GTAC	3 cut(s)	16, 825, 850
DdeI	CTNAG	2 cut(s)	158, 398
DpnI	GATC	2 cut(s)	156, 179
DpnII	GATC	2 cut(s)	154, 177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	148, 431
EarI	CTCTTC	2 cut(s)	148, 431
EciI	GGCGGA	2 cut(s)	187, 582
Eco130I	CCWWGG	3 cut(s)	6, 276, 665
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	6, 276, 665
EcoT22I	ATGCAT	2 cut(s)	733, 840
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	6, 276, 665
FaeI	CATG	5 cut(s)	100, 476, 669, 751, 795
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	5 cut(s)	96, 472, 665, 747, 791
FauNDI	CATATG	1 cut(s)	318
FokI	GGATG	3 cut(s)	293, 617, 847
FriOI	GRGCYC	1 cut(s)	246
FspAI	RTGCGCAY	2 cut(s)	377, 525
FspBI	CTAG	1 cut(s)	767
FspI	TGCGCA	2 cut(s)	377, 525
GlaI	GCGC	2 cut(s)	377, 525
GsuI	CTGGAG	1 cut(s)	763
HaeIII	GGCC	2 cut(s)	5, 754
HapII	CCGG	2 cut(s)	125, 387
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	2 cut(s)	378, 526
Hin1II	CATG	5 cut(s)	100, 476, 669, 751, 795
Hin6I	GCGC	2 cut(s)	376, 524
HinP1I	GCGC	2 cut(s)	376, 524
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	125, 387
HphI	GGTGA	4 cut(s)	138, 445, 632, 737
Hpy166II	GTNNAC	5 cut(s)	51, 222, 330, 695, 825
Hpy188I	TCNGA	3 cut(s)	399, 604, 685
Hpy188III	TCNNGA	6 cut(s)	184, 387, 433, 742, 767, 845
Hpy8I	GTNNAC	5 cut(s)	51, 222, 330, 695, 825
Hpy99I	CGWCG	2 cut(s)	140, 185
HpyAV	CCTTC	4 cut(s)	262, 466, 473, 608
HpyCH4III	ACNGT	5 cut(s)	20, 334, 368, 628, 788
HpyCH4V	TGCA	8 cut(s)	28, 581, 641, 707, 731, 784, 791, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 97, 138
HpyF3I	CTNAG	2 cut(s)	158, 398
Hsp92II	CATG	5 cut(s)	100, 476, 669, 751, 795
HspAI	GCGC	2 cut(s)	376, 524
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	2 cut(s)	154, 177
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	4 cut(s)	167, 241, 389, 744
LweI	GCATC	6 cut(s)	57, 511, 718, 748, 825, 847
MaeI	CTAG	1 cut(s)	767
MaeIII	GTNAC	2 cut(s)	287, 809
MalI	GATC	2 cut(s)	156, 179
MboI	GATC	2 cut(s)	154, 177
MboII	GAAGA	5 cut(s)	135, 187, 448, 623, 833
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	265, 297, 420, 677
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	6, 203, 324, 393, 398, 744
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	733, 840
MroI	TCCGGA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	296, 300
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	125, 387
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	76, 97, 138
NcoI	CCATGG	1 cut(s)	665
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	2 cut(s)	154, 177
NlaIII	CATG	5 cut(s)	100, 476, 669, 751, 795
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	2 cut(s)	377, 525
NsiI	ATGCAT	2 cut(s)	733, 840
NspI	RCATGY	1 cut(s)	795
PacI	TTAATTAA	1 cut(s)	300
PaeI	GCATGC	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	111
PshBI	ATTAAT	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	3 cut(s)	17, 826, 851
RsaNI	GTAC	3 cut(s)	16, 825, 850
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	296, 300
Sau3AI	GATC	2 cut(s)	154, 177
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	6 cut(s)	57, 511, 718, 748, 825, 847
SfcI	CTRYAG	1 cut(s)	465
SphI	GCATGC	1 cut(s)	795
Sse9I	AATT	4 cut(s)	265, 297, 420, 677
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	3 cut(s)	172, 567, 618
SspMI	CTAG	1 cut(s)	767
StuI	AGGCCT	1 cut(s)	754
StyI	CCWWGG	3 cut(s)	6, 276, 665
TaaI	ACNGT	5 cut(s)	20, 334, 368, 628, 788
TaqI	TCGA	3 cut(s)	65, 183, 432
TasI	AATT	4 cut(s)	265, 297, 420, 677
TatI	WGTACW	2 cut(s)	824, 849
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	296, 300
Tru9I	TTAA	2 cut(s)	296, 300
TscAI	CASTG	3 cut(s)	224, 633, 714
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	244, 297, 448, 516, 690
TspGWI	ACGGA	2 cut(s)	36, 239
TspRI	CASTG	3 cut(s)	224, 633, 714
VspI	ATTAAT	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	766
XceI	RCATGY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	767
Zsp2I	ATGCAT	2 cut(s)	733, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.