Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Forward (+)

27544037 .. 27547746

Gene Structure 3710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCAATTAGGTTTTGGTTTCCGATCAGAGGCGCTTTGAGGTTCCGAGCTCGTGCCTCAACAATGGCGAAGGGGAGGTACGGCCGGTTACGGAGCTCGAAATGGTCGACCTTCACGCTCGTCTTGTCGATGCTGTTCATGCTCACCGTCGTGCTTCTCATGCTCATGGCTTTCGGCATCGTTTCGCTTCCGGAGAGCTCCGACGACTCTCCGCCCAACGATCTCAGCTCCTTCCGCCGCAGGATCGTCGAGAGAAGCGAGGGATTGGGGAAGAGAGAGAATCAGTGGACTCAAGTGATCTCTTGGGAGCCTAGAGCTTTCATATATCACAATTTCTTGTCCAAGGAAGAATGTGACTACTTGATACAGCTTGCTACACCTCATATGACAAAGTCGACGGTTGTTGATAGCAAGACCGGGAAGAGCAAAGATAGTAGGGTCCGAACGAGCTCTGGCACATTTCTTAGGAGAGGACGTGATAAAGTAATTAGGGATATTGAAAAGAGAATAGCAGACTTCACTTTTATTCCTGTAGAGCATGGAGAAGGACTTCAAATTCTCCATTATGAAGTTGGACAGAAATACGATGCTCATTTTGATTACTTCCTTGATGAGTACAACACCAAGAATGGAGGCCAAAGGATTGCCACTCTTCTGATGTATCTGTCGGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTGCTGCCAAAGGGAATATCAGCGCTGTGCCATGGTGGAATGAGTTATCTGAATGTGGTAAAAAGGGACTTGCAGTGAAACCTAAAATGGGGGATGCATTACTATTTTGGAGCATGAGGCCCGATGCTAGTCTAGACCCATCAAGTTTGCATGGTGGATGCCCTGTGATAAGGGGTAACAAATGGTCGTCTACAAAGTGGATGCATCTTGAAGAGTACAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

309

Amino Acids

35.23

Weight (kDa)

9.4

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	182 - 300	4.6e-07	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	184 - 300	2.1e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	107, 395, 890
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	4 cut(s)	212, 235, 238, 684
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	3 cut(s)	80, 617, 917
AfeI	AGCGCT	1 cut(s)	724
AfiI	CCNNNNNNNGG	2 cut(s)	29, 788
AgsI	TTSAA	4 cut(s)	500, 554, 677, 911
AjiI	CACGTC	1 cut(s)	476
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	7 cut(s)	50, 96, 198, 228, 317, 370, 450
AluI	AGCT	7 cut(s)	50, 96, 198, 228, 317, 370, 450
Alw21I	GWGCWC	4 cut(s)	52, 98, 200, 452
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	724
AoxI	GGCC	3 cut(s)	82, 634, 818
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	35, 725
AspS9I	GGNCC	2 cut(s)	439, 819
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	2 cut(s)	136, 698
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	4 cut(s)	52, 98, 200, 452
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BauI	CACGAG	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	52, 98, 200, 452
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	1 cut(s)	847
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcnI	CCSGG	1 cut(s)	418
BfaI	CTAG	3 cut(s)	312, 828, 833
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	2 cut(s)	36, 726
BisI	GCNGC	2 cut(s)	238, 705
BlsI	GCNGC	2 cut(s)	239, 706
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	439
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	439, 819
BmiI	GGNNCC	3 cut(s)	44, 309, 440
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	8 cut(s)	120, 186, 577, 784, 814, 848, 891, 913
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	342, 731
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 788
Bse118I	RCCGGY	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	342, 731
BseGI	GGATG	4 cut(s)	676, 799, 863, 906
BseLI	CCNNNNNNNGG	2 cut(s)	29, 788
BseMII	CTCAG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	691
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	84, 636, 820
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	4 cut(s)	52, 98, 200, 452
BsiSI	CCGG	3 cut(s)	85, 191, 417
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	29, 788
BsmFI	GGGAC	1 cut(s)	780
BsnI	GGCC	3 cut(s)	84, 636, 820
Bsp1286I	GDGCHC	4 cut(s)	52, 98, 200, 452
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	24, 220, 243, 297
Bsp19I	CCATGG	1 cut(s)	731
BspACI	CCGC	4 cut(s)	212, 235, 238, 684
BspANI	GGCC	3 cut(s)	84, 636, 820
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	44, 309, 440
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	342, 731
BssMI	GATC	4 cut(s)	24, 220, 243, 297
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	342, 731
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	148, 400, 694
Bst6I	CTCTTC	4 cut(s)	266, 416, 657, 906
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	224, 464
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	4 cut(s)	676, 799, 863, 906
BstH2I	RGCGCY	2 cut(s)	36, 726
BstHHI	GCGC	2 cut(s)	35, 725
BstKTI	GATC	4 cut(s)	27, 223, 246, 300
BstMBI	GATC	4 cut(s)	24, 220, 243, 297
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 160, 234
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	691
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	84, 636, 820
BtgI	CCRYGG	1 cut(s)	731
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	4 cut(s)	676, 799, 863, 906
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	290, 699, 780
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	2 cut(s)	35, 725
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	439, 819
Csp6I	GTAC	3 cut(s)	79, 616, 916
CviAII	CATG	7 cut(s)	139, 160, 166, 539, 732, 814, 851
CviQI	GTAC	3 cut(s)	79, 616, 916
DdeI	CTNAG	2 cut(s)	224, 464
DpnI	GATC	4 cut(s)	26, 222, 245, 299
DpnII	GATC	4 cut(s)	24, 220, 243, 297
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	4 cut(s)	266, 416, 657, 906
EarI	CTCTTC	4 cut(s)	266, 416, 657, 906
EciI	GGCGGA	2 cut(s)	201, 224
Ecl136II	GAGCTC	4 cut(s)	50, 96, 198, 450
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	342, 731
Eco24I	GRGCYC	4 cut(s)	52, 98, 200, 452
Eco47I	GGWCC	1 cut(s)	439
Eco47III	AGCGCT	1 cut(s)	724
Eco52I	CGGCCG	1 cut(s)	82
Eco53kI	GAGCTC	4 cut(s)	50, 96, 198, 450
EcoICRI	GAGCTC	4 cut(s)	50, 96, 198, 450
EcoT14I	CCWWGG	2 cut(s)	342, 731
EcoT22I	ATGCAT	2 cut(s)	799, 906
EcoT38I	GRGCYC	4 cut(s)	52, 98, 200, 452
ErhI	CCWWGG	2 cut(s)	342, 731
FaeI	CATG	7 cut(s)	142, 163, 169, 542, 735, 817, 854
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	7 cut(s)	138, 159, 165, 538, 731, 813, 850
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	3 cut(s)	107, 395, 890
Fnu4HI	GCNGC	2 cut(s)	238, 705
FokI	GGATG	4 cut(s)	683, 806, 870, 913
FriOI	GRGCYC	4 cut(s)	52, 98, 200, 452
Fsp4HI	GCNGC	2 cut(s)	238, 705
FspBI	CTAG	3 cut(s)	312, 828, 833
GlaI	GCGC	2 cut(s)	34, 724
GluI	GCNGC	2 cut(s)	238, 705
HaeII	RGCGCY	2 cut(s)	36, 726
HaeIII	GGCC	3 cut(s)	84, 636, 820
HapII	CCGG	3 cut(s)	85, 191, 417
HhaI	GCGC	2 cut(s)	35, 725
Hin1II	CATG	7 cut(s)	142, 163, 169, 542, 735, 817, 854
Hin6I	GCGC	2 cut(s)	33, 723
HinP1I	GCGC	2 cut(s)	33, 723
HincII	GTYRAC	2 cut(s)	108, 396
HindII	GTYRAC	2 cut(s)	108, 396
HinfI	GANTC	3 cut(s)	206, 280, 289
HpaII	CCGG	3 cut(s)	85, 191, 417
HphI	GGTGA	2 cut(s)	136, 698
Hpy166II	GTNNAC	4 cut(s)	108, 288, 396, 891
Hpy188I	TCNGA	8 cut(s)	24, 29, 47, 202, 443, 657, 670, 751
Hpy188III	TCNNGA	4 cut(s)	191, 250, 833, 908
Hpy8I	GTNNAC	4 cut(s)	108, 288, 396, 891
Hpy99I	CGWCG	4 cut(s)	152, 206, 251, 400
HpyAV	CCTTC	5 cut(s)	64, 121, 241, 539, 674
HpyCH4III	ACNGT	3 cut(s)	148, 400, 694
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	773, 797, 850, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 160, 234
HpyF3I	CTNAG	2 cut(s)	224, 464
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	142, 163, 169, 542, 735, 817, 854
HspAI	GCGC	2 cut(s)	33, 723
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	24, 220, 243, 297
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	5 cut(s)	93, 203, 233, 307, 810
LpnPI	CCDG	8 cut(s)	98, 204, 226, 430, 438, 543, 714, 876
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	8 cut(s)	120, 186, 577, 784, 814, 848, 891, 913
MaeI	CTAG	3 cut(s)	312, 828, 833
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	3 cut(s)	87, 353, 875
MalI	GATC	4 cut(s)	26, 222, 245, 299
MboI	GATC	4 cut(s)	24, 220, 243, 297
MboII	GAAGA	6 cut(s)	283, 359, 433, 644, 689, 923
MhlI	GDGCHC	4 cut(s)	52, 98, 200, 452
MluCI	AATT	4 cut(s)	6, 331, 486, 555
MlyI	GAGTC	2 cut(s)	200, 283
MmeI	TCCRAC	3 cut(s)	225, 553, 648
MnlI	CCTC	9 cut(s)	23, 33, 67, 69, 253, 390, 464, 626, 810
Mph1103I	ATGCAT	2 cut(s)	799, 906
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	149, 164
MspI	CCGG	3 cut(s)	85, 191, 417
MspR9I	CCNGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	3 cut(s)	139, 160, 234
NciI	CCSGG	1 cut(s)	418
NcoI	CCATGG	1 cut(s)	731
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	4 cut(s)	24, 220, 243, 297
NlaIII	CATG	7 cut(s)	142, 163, 169, 542, 735, 817, 854
NlaIV	GGNNCC	3 cut(s)	44, 309, 440
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	2 cut(s)	799, 906
OliI	CACNNNNGTG	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 255
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	239, 706
PleI	GAGTC	2 cut(s)	200, 283
PpsI	GAGTC	2 cut(s)	200, 283
Psp124BI	GAGCTC	4 cut(s)	52, 98, 200, 452
PspN4I	GGNNCC	3 cut(s)	44, 309, 440
PspPI	GGNCC	2 cut(s)	439, 819
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	3 cut(s)	80, 617, 917
RsaNI	GTAC	3 cut(s)	79, 616, 916
RseI	CAYNNNNRTG	2 cut(s)	149, 164
SacI	GAGCTC	4 cut(s)	52, 98, 200, 452
SalI	GTCGAC	2 cut(s)	106, 394
SapI	GCTCTTC	1 cut(s)	416
SatI	GCNGC	2 cut(s)	238, 705
Sau3AI	GATC	4 cut(s)	24, 220, 243, 297
Sau96I	GGNCC	2 cut(s)	439, 819
SchI	GAGTC	2 cut(s)	200, 283
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	4 cut(s)	52, 98, 200, 452
SfaNI	GCATC	8 cut(s)	120, 186, 577, 784, 814, 848, 891, 913
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	2 cut(s)	149, 164
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	6, 331, 486, 555
SsiI	CCGC	4 cut(s)	212, 235, 238, 684
SspMI	CTAG	3 cut(s)	312, 828, 833
SstI	GAGCTC	4 cut(s)	52, 98, 200, 452
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	342, 731
TaaI	ACNGT	3 cut(s)	148, 400, 694
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	5 cut(s)	98, 107, 128, 249, 395
TasI	AATT	4 cut(s)	6, 331, 486, 555
TatI	WGTACW	2 cut(s)	615, 915
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	3 cut(s)	290, 699, 780
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	127, 310, 582
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	290, 699, 780
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	12, 569
XmiI	GTMKAC	3 cut(s)	107, 395, 890
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	3 cut(s)	312, 828, 833
Zsp2I	ATGCAT	2 cut(s)	799, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.