Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Reverse (-)

47440008 .. 47440660

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0322900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGAGGACAATGCCATGGAGTGATGACGAGGACGATTCCTCATCCGACGAGGAGTCCGAACCATCACAAGGGAAGCCAAAGAGCAAGGTTTTGGATTTCGAGGCGTTGAGGAAGCACGGTTACAGAGGAGGACCGTCTATACTGAAGGTGCCTCCACCCAAGGAGTCGGATAAGGACAAGGACTGGTCTTGGTCGACCGGAGTGGATCATAAGGTGAAGAGTGGAACCACCACCAAGGACAAGGTGGATGAAGAAGAGAGCAAAGAACAGCGACGGAAGACCAGGGATGCATTGGCCGCCGGGGAGCAGCTGGAGTATGTGCTGACCAGGAAGGAGAAGGAGAAGGAGAAGAACTTGTCCTTTTCGCAGAAGGAGAAGAGGAAGAGGGACCTCGGTCAGGCCAGCAGGGGGAAGAACTATGTTGAAGAAGAGAAGAGGTTGCTGAGGGAGAATGGTGTCTACTCTGGGTTTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

160

Amino Acids

18.41

Weight (kDa)

7.8

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccI	GTMKAC	2 cut(s)	197, 462
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	71, 400, 411
AgsI	TTSAA	1 cut(s)	428
AhdI	GACNNNNNGTC	1 cut(s)	55
AjnI	CCWGG	2 cut(s)	284, 329
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	297, 402
ApeKI	GCWGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	134, 391
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	134, 391
BanI	GGYRCC	1 cut(s)	151
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	286, 331
BcnI	CCSGG	1 cut(s)	304
BisI	GCNGC	2 cut(s)	300, 311
BlsI	GCNGC	2 cut(s)	301, 312
Bme1390I	CCNGG	3 cut(s)	286, 304, 331
Bme18I	GGWCC	2 cut(s)	134, 391
BmeRI	GACNNNNNGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	134, 391
BmiI	GGNNCC	3 cut(s)	153, 229, 392
BmrFI	CCNGG	3 cut(s)	286, 304, 331
BmsI	GCATC	2 cut(s)	280, 466
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	304
BsaJI	CCNNGG	6 cut(s)	17, 162, 237, 285, 303, 394
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 400, 411
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	286, 331
BseDI	CCNNGG	6 cut(s)	17, 162, 237, 285, 303, 394
BseGI	GGATG	3 cut(s)	44, 256, 295
BseLI	CCNNNNNNNGG	3 cut(s)	71, 400, 411
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	68, 144
BseXI	GCAGC	1 cut(s)	322
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	299, 404
BshNI	GGYRCC	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	201, 303
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	71, 400, 411
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	299, 404
Bsp143I	GATC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	299, 404
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	153, 229, 392
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	6 cut(s)	17, 162, 237, 285, 303, 394
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	3 cut(s)	17, 162, 237
Bst2UI	CCWGG	2 cut(s)	286, 331
Bst4CI	ACNGT	2 cut(s)	122, 138
Bst6I	CTCTTC	6 cut(s)	215, 252, 374, 380, 426, 431
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	446, 480
BstDSI	CCRYGG	1 cut(s)	17
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	44, 256, 295
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	286, 331
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	284, 302, 329
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	299, 404
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	44, 256, 295
Cac8I	GCNNGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	134, 391
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	4 cut(s)	79, 299, 313, 404
CviKI_1	RGCY	4 cut(s)	79, 299, 313, 404
DdeI	CTNAG	2 cut(s)	446, 480
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DriI	GACNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	6 cut(s)	215, 252, 374, 380, 426, 431
Eam1105I	GACNNNNNGTC	1 cut(s)	55
EarI	CTCTTC	6 cut(s)	215, 252, 374, 380, 426, 431
Eco130I	CCWWGG	3 cut(s)	17, 162, 237
Eco47I	GGWCC	2 cut(s)	134, 391
Eco57I	CTGAAG	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	284, 329
EcoT14I	CCWWGG	3 cut(s)	17, 162, 237
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	3 cut(s)	17, 162, 237
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 143, 213, 321, 423
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	17
FblI	GTMKAC	2 cut(s)	197, 462
Fnu4HI	GCNGC	2 cut(s)	300, 311
FokI	GGATG	3 cut(s)	31, 263, 302
Fsp4HI	GCNGC	2 cut(s)	300, 311
GluI	GCNGC	2 cut(s)	300, 311
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	299, 404
HapII	CCGG	2 cut(s)	201, 303
Hin1II	CATG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	3 cut(s)	38, 56, 167
HpaII	CCGG	2 cut(s)	201, 303
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	198, 463
Hpy188I	TCNGA	3 cut(s)	49, 61, 172
Hpy8I	GTNNAC	2 cut(s)	198, 463
Hpy99I	CGWCG	2 cut(s)	53, 279
HpyAV	CCTTC	5 cut(s)	142, 328, 334, 340, 367
HpyCH4III	ACNGT	2 cut(s)	122, 138
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	446, 480
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	280, 466
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	65, 176
MmeI	TCCRAC	2 cut(s)	72, 150
Mph1103I	ATGCAT	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	201, 303
MspR9I	CCNGG	3 cut(s)	286, 304, 331
MvaI	CCWGG	2 cut(s)	286, 331
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	3 cut(s)	153, 229, 392
NsiI	ATGCAT	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	301, 312
PleI	GAGTC	2 cut(s)	64, 175
PpsI	GAGTC	2 cut(s)	64, 175
PpuMI	RGGWCCY	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	284, 329
PspGI	CCWGG	2 cut(s)	284, 329
PspN4I	GGNNCC	3 cut(s)	153, 229, 392
PspPI	GGNCC	2 cut(s)	134, 391
PspPPI	RGGWCCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	196
SatI	GCNGC	2 cut(s)	300, 311
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	134, 391
SchI	GAGTC	2 cut(s)	65, 176
ScrFI	CCNGG	3 cut(s)	286, 304, 331
SetI	ASST	7 cut(s)	93, 153, 219, 249, 315, 396, 443
SfaNI	GCATC	2 cut(s)	280, 466
SinI	GGWCC	2 cut(s)	134, 391
SsiI	CCGC	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	284, 302, 329
StyI	CCWWGG	3 cut(s)	17, 162, 237
TaaI	ACNGT	2 cut(s)	122, 138
TaqI	TCGA	2 cut(s)	102, 197
TaqII	GACCGA	1 cut(s)	386
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	17, 267
TspGWI	ACGGA	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	134, 391
XagI	CCTNNNNNAGG	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 292
XmiI	GTMKAC	2 cut(s)	197, 462
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.