prolyl 4-hydroxylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20270 AT1G20270 AT1G20270 |
| fragaria_vesca | FvH4_2g37990 FvH4_2g37990 FvH4_2g37990 |
| malus_domestica | MD08G1008100.v1.1 MD15G1007000.v1.1 |
| prunus_persica | Prupe.1G359900_v2.0.a1 |
| pyrus_communis | pycom08g00660 pycom15g00560 |
| rosa_chinensis | RchiOBHm_Chr6g0303631 |
| rosa_laevigata | RLG00000011066 |
| rosa_multiflora | Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021 |
| rosa_roxburghii | Rroxscaffold_7G00164560 |
| rosa_rugosa | Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100 |
| rosa_samantha | Rh6AG437400 Rh6CG449400 Rh6DG436200 |
| rosa_wichuraiana | Rw6G037870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 416 |
| AccI | GTMKAC | 1 cut(s) | 80 |
| AcuI | CTGAAG | 2 cut(s) | 458, 509 |
| AfaI | GTAC | 1 cut(s) | 890 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 603, 761 |
| AgsI | TTSAA | 5 cut(s) | 33, 592, 650, 694, 884 |
| AjiI | CACGTC | 1 cut(s) | 449 |
| AluBI | AGCT | 3 cut(s) | 26, 290, 423 |
| AluI | AGCT | 3 cut(s) | 26, 290, 423 |
| Alw21I | GWGCWC | 1 cut(s) | 28 |
| Alw26I | GTCTC | 1 cut(s) | 656 |
| AoxI | GGCC | 2 cut(s) | 607, 791 |
| ApeKI | GCWGC | 3 cut(s) | 127, 213, 677 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 154, 522 |
| AspLEI | GCGC | 2 cut(s) | 213, 417 |
| AspS9I | GGNCC | 1 cut(s) | 607 |
| AsuHPI | GGTGA | 5 cut(s) | 163, 177, 671, 760, 776 |
| BanII | GRGCYC | 1 cut(s) | 28 |
| Bbv12I | GWGCWC | 1 cut(s) | 28 |
| BbvI | GCAGC | 3 cut(s) | 114, 225, 664 |
| BccI | CCATC | 2 cut(s) | 227, 699 |
| BcoDI | GTCTC | 1 cut(s) | 656 |
| BfaI | CTAG | 2 cut(s) | 801, 806 |
| BfmI | CTRYAG | 1 cut(s) | 504 |
| BisI | GCNGC | 3 cut(s) | 128, 214, 678 |
| BlsI | GCNGC | 3 cut(s) | 129, 215, 679 |
| BmgBI | CACGTC | 1 cut(s) | 449 |
| BmgT120I | GGNCC | 1 cut(s) | 607 |
| BmiI | GGNNCC | 2 cut(s) | 282, 608 |
| BmrI | ACTGGG | 1 cut(s) | 399 |
| BmsI | GCATC | 7 cut(s) | 93, 123, 550, 757, 787, 821, 864 |
| BmuI | ACTGGG | 1 cut(s) | 399 |
| BpmI | CTGGAG | 1 cut(s) | 802 |
| BsaJI | CCNNGG | 1 cut(s) | 315 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 603, 761 |
| Bse1I | ACTGG | 1 cut(s) | 394 |
| BseDI | CCNNGG | 1 cut(s) | 315 |
| BseGI | GGATG | 2 cut(s) | 836, 879 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 603, 761 |
| BseMII | CTCAG | 1 cut(s) | 211 |
| BseNI | ACTGG | 1 cut(s) | 394 |
| BseXI | GCAGC | 3 cut(s) | 114, 225, 664 |
| BshFI | GGCC | 2 cut(s) | 609, 793 |
| BsiHKAI | GWGCWC | 1 cut(s) | 28 |
| BsiSI | CCGG | 1 cut(s) | 164 |
| BslFI | GGGAC | 2 cut(s) | 459, 753 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 603, 761 |
| BsmAI | GTCTC | 1 cut(s) | 656 |
| BsmFI | GGGAC | 2 cut(s) | 459, 753 |
| BsnI | GGCC | 2 cut(s) | 609, 793 |
| Bsp1286I | GDGCHC | 1 cut(s) | 28 |
| Bsp143I | GATC | 2 cut(s) | 193, 253 |
| BspANI | GGCC | 2 cut(s) | 609, 793 |
| BspCNI | CTCAG | 1 cut(s) | 210 |
| BspLI | GGNNCC | 2 cut(s) | 282, 608 |
| BspQI | GCTCTTC | 1 cut(s) | 389 |
| BsrI | ACTGG | 1 cut(s) | 394 |
| BssECI | CCNNGG | 1 cut(s) | 315 |
| BssMI | GATC | 2 cut(s) | 193, 253 |
| BssT1I | CCWWGG | 1 cut(s) | 315 |
| Bst4CI | ACNGT | 5 cut(s) | 13, 220, 373, 667, 827 |
| Bst6I | CTCTTC | 5 cut(s) | 389, 434, 470, 630, 879 |
| BstDEI | CTNAG | 1 cut(s) | 197 |
| BstF5I | GGATG | 2 cut(s) | 836, 879 |
| BstHHI | GCGC | 2 cut(s) | 213, 417 |
| BstKTI | GATC | 2 cut(s) | 196, 256 |
| BstMAI | GTCTC | 1 cut(s) | 656 |
| BstMBI | GATC | 2 cut(s) | 193, 253 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 112, 133 |
| BstSFI | CTRYAG | 1 cut(s) | 504 |
| BstV1I | GCAGC | 3 cut(s) | 114, 225, 664 |
| BsuRI | GGCC | 2 cut(s) | 609, 793 |
| BtgZI | GCGATG | 1 cut(s) | 718 |
| BtrI | CACGTC | 1 cut(s) | 449 |
| BtsCI | GGATG | 2 cut(s) | 836, 879 |
| BtsIMutI | CAGTG | 2 cut(s) | 263, 672 |
| CfoI | GCGC | 2 cut(s) | 213, 417 |
| Cfr13I | GGNCC | 1 cut(s) | 607 |
| Csp6I | GTAC | 1 cut(s) | 889 |
| CviAII | CATG | 3 cut(s) | 112, 512, 787 |
| CviJI | RGCY | 7 cut(s) | 26, 143, 283, 290, 423, 609, 793 |
| CviKI_1 | RGCY | 7 cut(s) | 26, 143, 283, 290, 423, 609, 793 |
| CviQI | GTAC | 1 cut(s) | 889 |
| DdeI | CTNAG | 1 cut(s) | 197 |
| DpnI | GATC | 2 cut(s) | 195, 255 |
| DpnII | GATC | 2 cut(s) | 193, 253 |
| Eam1104I | CTCTTC | 5 cut(s) | 389, 434, 470, 630, 879 |
| EarI | CTCTTC | 5 cut(s) | 389, 434, 470, 630, 879 |
| Ecl136II | GAGCTC | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 1 cut(s) | 315 |
| Eco147I | AGGCCT | 1 cut(s) | 793 |
| Eco24I | GRGCYC | 1 cut(s) | 28 |
| Eco53kI | GAGCTC | 1 cut(s) | 26 |
| Eco57I | CTGAAG | 2 cut(s) | 458, 509 |
| EcoICRI | GAGCTC | 1 cut(s) | 26 |
| EcoT14I | CCWWGG | 1 cut(s) | 315 |
| EcoT22I | ATGCAT | 2 cut(s) | 772, 879 |
| EcoT38I | GRGCYC | 1 cut(s) | 28 |
| ErhI | CCWWGG | 1 cut(s) | 315 |
| FaeI | CATG | 3 cut(s) | 115, 515, 790 |
| FaqI | GGGAC | 2 cut(s) | 459, 753 |
| FatI | CATG | 3 cut(s) | 111, 511, 786 |
| FblI | GTMKAC | 1 cut(s) | 80 |
| Fnu4HI | GCNGC | 3 cut(s) | 128, 214, 678 |
| FokI | GGATG | 2 cut(s) | 843, 886 |
| FriOI | GRGCYC | 1 cut(s) | 28 |
| Fsp4HI | GCNGC | 3 cut(s) | 128, 214, 678 |
| FspAI | RTGCGCAY | 1 cut(s) | 416 |
| FspBI | CTAG | 2 cut(s) | 801, 806 |
| FspI | TGCGCA | 1 cut(s) | 416 |
| GlaI | GCGC | 2 cut(s) | 212, 416 |
| GluI | GCNGC | 3 cut(s) | 128, 214, 678 |
| GsuI | CTGGAG | 1 cut(s) | 802 |
| HaeIII | GGCC | 2 cut(s) | 609, 793 |
| HapII | CCGG | 1 cut(s) | 164 |
| HhaI | GCGC | 2 cut(s) | 213, 417 |
| Hin1II | CATG | 3 cut(s) | 115, 515, 790 |
| Hin6I | GCGC | 2 cut(s) | 211, 415 |
| HinP1I | GCGC | 2 cut(s) | 211, 415 |
| HincII | GTYRAC | 2 cut(s) | 81, 369 |
| HindII | GTYRAC | 2 cut(s) | 81, 369 |
| HinfI | GANTC | 4 cut(s) | 150, 179, 237, 529 |
| HpaII | CCGG | 1 cut(s) | 164 |
| HphI | GGTGA | 5 cut(s) | 163, 177, 671, 760, 776 |
| Hpy166II | GTNNAC | 5 cut(s) | 81, 87, 261, 369, 734 |
| Hpy188I | TCNGA | 5 cut(s) | 438, 528, 630, 643, 724 |
| Hpy188III | TCNNGA | 3 cut(s) | 426, 781, 806 |
| Hpy8I | GTNNAC | 5 cut(s) | 81, 87, 261, 369, 734 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 179 |
| HpyAV | CCTTC | 5 cut(s) | 37, 170, 512, 647, 706 |
| HpyCH4III | ACNGT | 5 cut(s) | 13, 220, 373, 667, 827 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 448 |
| HpyCH4V | TGCA | 6 cut(s) | 64, 563, 680, 770, 823, 877 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 112, 133 |
| HpyF3I | CTNAG | 1 cut(s) | 197 |
| HpySE526I | ACGT | 2 cut(s) | 83, 448 |
| Hsp92II | CATG | 3 cut(s) | 115, 515, 790 |
| HspAI | GCGC | 2 cut(s) | 211, 415 |
| Kzo9I | GATC | 2 cut(s) | 193, 253 |
| LguI | GCTCTTC | 1 cut(s) | 389 |
| LmnI | GCTCC | 2 cut(s) | 280, 783 |
| Lsp1109I | GCAGC | 3 cut(s) | 114, 225, 664 |
| LweI | GCATC | 7 cut(s) | 93, 123, 550, 757, 787, 821, 864 |
| MaeI | CTAG | 2 cut(s) | 801, 806 |
| MaeII | ACGT | 2 cut(s) | 83, 448 |
| MaeIII | GTNAC | 1 cut(s) | 326 |
| MalI | GATC | 2 cut(s) | 195, 255 |
| MboI | GATC | 2 cut(s) | 193, 253 |
| MboII | GAAGA | 9 cut(s) | 174, 263, 332, 406, 451, 487, 617, 662, 896 |
| MhlI | GDGCHC | 1 cut(s) | 28 |
| MluCI | AATT | 4 cut(s) | 6, 304, 694, 716 |
| MnlI | CCTC | 2 cut(s) | 435, 783 |
| Mph1103I | ATGCAT | 2 cut(s) | 772, 879 |
| MroXI | GAANNNNTTC | 2 cut(s) | 154, 522 |
| MseI | TTAA | 1 cut(s) | 335 |
| MspI | CCGG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 112, 133 |
| NdeII | GATC | 2 cut(s) | 193, 253 |
| NlaIII | CATG | 3 cut(s) | 115, 515, 790 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 608 |
| NmeAIII | GCCGAG | 1 cut(s) | 309 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NsbI | TGCGCA | 1 cut(s) | 416 |
| NsiI | ATGCAT | 2 cut(s) | 772, 879 |
| PceI | AGGCCT | 1 cut(s) | 793 |
| PciSI | GCTCTTC | 1 cut(s) | 389 |
| PdmI | GAANNNNTTC | 2 cut(s) | 154, 522 |
| PfeI | GAWTC | 4 cut(s) | 150, 179, 237, 529 |
| PkrI | GCNGC | 3 cut(s) | 129, 215, 679 |
| Psp124BI | GAGCTC | 1 cut(s) | 28 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 608 |
| PspPI | GGNCC | 1 cut(s) | 607 |
| RsaI | GTAC | 1 cut(s) | 890 |
| RsaNI | GTAC | 1 cut(s) | 889 |
| SacI | GAGCTC | 1 cut(s) | 28 |
| SalI | GTCGAC | 1 cut(s) | 79 |
| SapI | GCTCTTC | 1 cut(s) | 389 |
| SaqAI | TTAA | 1 cut(s) | 335 |
| SatI | GCNGC | 3 cut(s) | 128, 214, 678 |
| Sau3AI | GATC | 2 cut(s) | 193, 253 |
| Sau96I | GGNCC | 1 cut(s) | 607 |
| SduI | GDGCHC | 1 cut(s) | 28 |
| SfaNI | GCATC | 7 cut(s) | 93, 123, 550, 757, 787, 821, 864 |
| SfcI | CTRYAG | 1 cut(s) | 504 |
| Sse9I | AATT | 4 cut(s) | 6, 304, 694, 716 |
| SseBI | AGGCCT | 1 cut(s) | 793 |
| SspMI | CTAG | 2 cut(s) | 801, 806 |
| SstI | GAGCTC | 1 cut(s) | 28 |
| StuI | AGGCCT | 1 cut(s) | 793 |
| StyI | CCWWGG | 1 cut(s) | 315 |
| TaaI | ACNGT | 5 cut(s) | 13, 220, 373, 667, 827 |
| TaiI | ACGT | 2 cut(s) | 86, 451 |
| TaqI | TCGA | 4 cut(s) | 22, 80, 101, 378 |
| TasI | AATT | 4 cut(s) | 6, 304, 694, 716 |
| TatI | WGTACW | 1 cut(s) | 888 |
| TfiI | GAWTC | 4 cut(s) | 150, 179, 237, 529 |
| Tru1I | TTAA | 1 cut(s) | 335 |
| Tru9I | TTAA | 1 cut(s) | 335 |
| TscAI | CASTG | 2 cut(s) | 263, 672 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| TseI | GCWGC | 3 cut(s) | 127, 213, 677 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 4 cut(s) | 100, 283, 487, 555 |
| TspGWI | ACGGA | 1 cut(s) | 628 |
| TspRI | CASTG | 2 cut(s) | 263, 672 |
| XbaI | TCTAGA | 1 cut(s) | 805 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 542 |
| XmiI | GTMKAC | 1 cut(s) | 80 |
| XmnI | GAANNNNTTC | 2 cut(s) | 154, 522 |
| XspI | CTAG | 2 cut(s) | 801, 806 |
| Zsp2I | ATGCAT | 2 cut(s) | 772, 879 |