Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Forward (+)

6447637 .. 6450066

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCAATTAGGCTTTGGTTTCCGATCAGAGCTTTGAGGTTCGGAGCTCGTGGTTCAACAATGGCGAAGGGGAGGTACGGCGGCCGGTTACGGAGCTCGAAATGGTCGACGTTCACGTTCGTCTTGTCGATGCTGTTCATGCTGACGGTGGTGCTTCTGATGCTCATGGCCTTCGGAATCGTGTCGCTTCCGGAGAGCGCCGACGACTCTTCGCCGAACGATCTCAGTTCCTTCCGCCGCAGGATCGTTGAGAGAAGCGAGGGATTGGGGAAGAGAGAGAAGCAGTGGACCGAAGTGATCTCTTGGGAGCCCAGAGCTTTCATATATCACAATTTCTTGTCCAAGGAAGAATGTGACTACTTGATAAAGCTTGCTACACCTCACATGGCAAAGTCAACTGTTGTCGATAGCAAGACTGGGAAGAGCAAAGATAGTAGGGTCCGAACAAGCTCTGGCACGTTTCTTAGGAGAGGACGTGATAAAGTAGTTAGGGATATTGAAAAGAGAATAGCAGACTTCACTTTTATTCCTGTAGAGCATGGAGAAGGACTTCAAATTCTCCACTATGAAGTTGGACAGAAGTACGATGCACATTTTGATTACTTCCTTGATGAGTTCAACACCAAGAATGGAGGCCAACGGATTGCCACTCTTCTGATGTATCTGTCAGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTGCTGCCAAAGGGAATATCAGCTCCGTGCGTTGGTGGAATGAATTATCCGAATGTGGTAAACAGGGACTTGCAGTGAAACCTAAAATGGGGGATGCATTGTTATTTTGGAGCATGAGGCCCGATGCTAGTCTAGACGCATCAAGTTTGCATGGTGGATGCCCTGTGATAAGGGGTAACAAGTGGTCGTCTACAAAGTGGATGCATCTTGAAGAGTACAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

309

Amino Acids

35.1

Weight (kDa)

9.4

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	182 - 302	2.8e-07	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	184 - 302	2.2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	107, 890
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	4 cut(s)	81, 235, 238, 684
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	3 cut(s)	77, 584, 917
AfiI	CCNNNNNNNGG	2 cut(s)	732, 788
AgsI	TTSAA	6 cut(s)	57, 500, 554, 619, 677, 911
AjiI	CACGTC	1 cut(s)	476
AluBI	AGCT	7 cut(s)	32, 47, 96, 317, 370, 450, 723
AluI	AGCT	7 cut(s)	32, 47, 96, 317, 370, 450, 723
Alw21I	GWGCWC	2 cut(s)	49, 98
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	4 cut(s)	82, 168, 634, 818
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	288, 439, 819
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	288, 439
BanII	GRGCYC	3 cut(s)	49, 98, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	49, 98
BbvI	GCAGC	1 cut(s)	691
BceAI	ACGGC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	828, 833
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	82, 238, 705
BlsI	GCNGC	3 cut(s)	83, 239, 706
Bme18I	GGWCC	2 cut(s)	288, 439
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	3 cut(s)	288, 439, 819
BmiI	GGNNCC	2 cut(s)	309, 440
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
BmuI	ACTGGG	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	732, 788
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	799, 863, 906
BseLI	CCNNNNNNNGG	2 cut(s)	732, 788
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	421
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	691
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	84, 170, 636, 820
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	49, 98
BsiSI	CCGG	2 cut(s)	85, 191
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	732, 788
BsmFI	GGGAC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	84, 170, 636, 820
Bsp1286I	GDGCHC	3 cut(s)	49, 98, 312
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	24, 220, 243, 297
BspACI	CCGC	4 cut(s)	81, 235, 238, 684
BspANI	GGCC	4 cut(s)	84, 170, 636, 820
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	309, 440
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	24, 220, 243, 297
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	148, 400, 694
Bst6I	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	224, 464
BstF5I	GGATG	3 cut(s)	799, 863, 906
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	4 cut(s)	27, 223, 246, 300
BstMBI	GATC	4 cut(s)	24, 220, 243, 297
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 139, 160
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	691
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	84, 170, 636, 820
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	799, 863, 906
BtsI	GCAGTG	2 cut(s)	290, 780
BtsIMutI	CAGTG	3 cut(s)	290, 699, 780
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	288, 439, 819
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	76, 583, 916
CviAII	CATG	6 cut(s)	139, 166, 385, 539, 814, 851
CviQI	GTAC	3 cut(s)	76, 583, 916
DdeI	CTNAG	2 cut(s)	224, 464
DpnI	GATC	4 cut(s)	26, 222, 245, 299
DpnII	GATC	4 cut(s)	24, 220, 243, 297
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
EarI	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	47, 96
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	3 cut(s)	49, 98, 312
Eco47I	GGWCC	2 cut(s)	288, 439
Eco52I	CGGCCG	1 cut(s)	82
Eco53kI	GAGCTC	2 cut(s)	47, 96
EcoICRI	GAGCTC	2 cut(s)	47, 96
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	2 cut(s)	799, 906
EcoT38I	GRGCYC	3 cut(s)	49, 98, 312
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
FaiI	YATR	9 cut(s)	140, 167, 323, 325, 386, 540, 567, 815, 852
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	6 cut(s)	138, 165, 384, 538, 813, 850
FblI	GTMKAC	2 cut(s)	107, 890
Fnu4HI	GCNGC	3 cut(s)	82, 238, 705
FokI	GGATG	3 cut(s)	806, 870, 913
FriOI	GRGCYC	3 cut(s)	49, 98, 312
Fsp4HI	GCNGC	3 cut(s)	82, 238, 705
FspBI	CTAG	2 cut(s)	828, 833
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	82, 238, 705
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	84, 170, 636, 820
HapII	CCGG	2 cut(s)	85, 191
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	108, 396
HindII	GTYRAC	2 cut(s)	108, 396
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	177, 206
HpaII	CCGG	2 cut(s)	85, 191
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	6 cut(s)	108, 114, 288, 396, 761, 891
Hpy188III	TCNNGA	3 cut(s)	191, 833, 908
Hpy8I	GTNNAC	6 cut(s)	108, 114, 288, 396, 761, 891
Hpy99I	CGWCG	2 cut(s)	112, 206
HpyAV	CCTTC	5 cut(s)	61, 181, 241, 539, 674
HpyCH4III	ACNGT	3 cut(s)	148, 400, 694
HpyCH4IV	ACGT	4 cut(s)	110, 116, 458, 475
HpyCH4V	TGCA	5 cut(s)	590, 773, 797, 850, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 139, 160
HpyF3I	CTNAG	2 cut(s)	224, 464
HpySE526I	ACGT	4 cut(s)	110, 116, 458, 475
Hsp92II	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
HspAI	GCGC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	24, 220, 243, 297
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	5 cut(s)	44, 93, 307, 728, 810
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
MaeI	CTAG	2 cut(s)	828, 833
MaeII	ACGT	4 cut(s)	110, 116, 458, 475
MaeIII	GTNAC	3 cut(s)	87, 353, 875
MalI	GATC	4 cut(s)	26, 222, 245, 299
MboI	GATC	4 cut(s)	24, 220, 243, 297
MboII	GAAGA	7 cut(s)	201, 283, 359, 433, 644, 689, 923
MhlI	GDGCHC	3 cut(s)	49, 98, 312
MluCI	AATT	4 cut(s)	6, 331, 555, 743
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	7 cut(s)	30, 66, 253, 390, 464, 626, 810
Mph1103I	ATGCAT	2 cut(s)	799, 906
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	549
MspI	CCGG	2 cut(s)	85, 191
MwoI	GCNNNNNNNGC	3 cut(s)	10, 139, 160
NdeII	GATC	4 cut(s)	24, 220, 243, 297
NlaIII	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
NlaIV	GGNNCC	2 cut(s)	309, 440
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	2 cut(s)	799, 906
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 113
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	83, 239, 706
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	2 cut(s)	49, 98
PspN4I	GGNNCC	2 cut(s)	309, 440
PspPI	GGNCC	3 cut(s)	288, 439, 819
RsaI	GTAC	3 cut(s)	77, 584, 917
RsaNI	GTAC	3 cut(s)	76, 583, 916
SacI	GAGCTC	2 cut(s)	49, 98
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	416
SatI	GCNGC	3 cut(s)	82, 238, 705
Sau3AI	GATC	4 cut(s)	24, 220, 243, 297
Sau96I	GGNCC	3 cut(s)	288, 439, 819
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	49, 98, 312
SfaNI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	288, 439
Sse9I	AATT	4 cut(s)	6, 331, 555, 743
SsiI	CCGC	4 cut(s)	81, 235, 238, 684
SspMI	CTAG	2 cut(s)	828, 833
SstI	GAGCTC	2 cut(s)	49, 98
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	148, 400, 694
TaiI	ACGT	4 cut(s)	113, 119, 461, 478
TaqI	TCGA	4 cut(s)	98, 107, 128, 405
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	4 cut(s)	6, 331, 555, 743
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	2 cut(s)	84, 240
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	3 cut(s)	290, 699, 780
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	127, 310, 582, 756
TspGWI	ACGGA	3 cut(s)	106, 655, 715
TspRI	CASTG	3 cut(s)	290, 699, 780
VpaK11BI	GGWCC	2 cut(s)	288, 439
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	12, 569
XmiI	GTMKAC	2 cut(s)	107, 890
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	828, 833
Zsp2I	ATGCAT	2 cut(s)	799, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.