Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007063

Physical Location & Seq

Genomic Coordinates Reverse (-)

62115142 .. 62117975

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCAATTAGGTTTTGGTTTCCGATCAGAGCTTTGAGGTTCGGAGCTCGTGGTTCAACAATGGCGAAGGGGAGGTACGGCGGCCGGTTACGGAGCTCGAAATGGTCGACGTTCACGCTCGTCTTGTCGATGCTGTTCATGCTGACGGTGGTGCTTCTGATGCTCATGGCCTTCGGAATCGTGTCGCTTCCGGAGGGCACCGACGACTCTTCGCCGAACGATCTCAGTTCCTTCCGCCGCAGGATCGTTGAGAGAAGCGAGGGATTGGGGAAGAGAGAGAAGCAGTGGACCGAAGTGATCTCTTGGGAGCCCAGAGCTTTCATATATCACAATTTCTTGTCCAAGGAAGAATGCGACTACTTGATAAAGCTTGCTACACCTCACATGGCAAAGTCGACTGTTGTCGATAGCAAGACTGGGAAGAGCAAAGATAGTAGGGTCCGAACAAGCTCTGGCACGTTTCTTAGGAGAGGACGTGATAAAGTAGTTAGGGATATTGAAAAGAGAATAGCAGACTTCACTTTTATTCCTGTAGAGCATGGAGAAGGACTTCAAATTCTCCACTATGAAGTTGGACAGAAGTACGATGCACATTTTGATTACTTCCTTGATGAGTTCAACACCAAGAATGGAGGCCAACGGATTGCCACTCTTCTGATGTATCTGTCAGATGTTGAAGAAGGCGGTGAAACAGTGTTTCCTGCTGCCAAAGGGAATATCAGCTCTGTGCGTTGGTGGAATGAATTATCTGAATGTGGTAAACAGGGACTTGCAGTGAAACCTAAAATGGGGGATGCATTACTATTTTGGAGCATGAGGCCCGATGCTAGTCTAGACGCATCAAGTTTGCATGGTGGATGCCCTGTGATAAGGGGTAACAAGTGGTCGTCTACAAAGTGGATGCATCTTGAAGAGTACAAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

308

Amino Acids

35.1

Weight (kDa)

9.4

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	182 - 302	2.8e-07	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	184 - 302	2.2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20270 AT1G20270 AT1G20270
fragaria_vesca	FvH4_2g37990 FvH4_2g37990 FvH4_2g37990
malus_domestica	MD08G1008100.v1.1 MD15G1007000.v1.1
prunus_persica	Prupe.1G359900_v2.0.a1
pyrus_communis	pycom08g00660 pycom15g00560
rosa_chinensis	RchiOBHm_Chr6g0303631
rosa_laevigata	RLG00000011066
rosa_multiflora	Rmu_co8483733.1_g000001 Rmu_ssc0000114.1_g000021
rosa_roxburghii	Rroxscaffold_7G00164560
rosa_rugosa	Rorug06G0322900 Rorug06G0322900 Rorug06G0323000 Rorug06G0323000 Rorug06G0323100
rosa_samantha	Rh6AG437400 Rh6CG449400 Rh6DG436200
rosa_wichuraiana	Rw6G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	3 cut(s)	107, 395, 890
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	4 cut(s)	81, 235, 238, 684
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	555
AfaI	GTAC	3 cut(s)	77, 584, 917
AfiI	CCNNNNNNNGG	1 cut(s)	788
AgsI	TTSAA	6 cut(s)	57, 500, 554, 619, 677, 911
AjiI	CACGTC	1 cut(s)	476
AluBI	AGCT	7 cut(s)	32, 47, 96, 317, 370, 450, 723
AluI	AGCT	7 cut(s)	32, 47, 96, 317, 370, 450, 723
Alw21I	GWGCWC	2 cut(s)	49, 98
AlwI	GGATC	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	4 cut(s)	82, 168, 634, 818
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	549
AspS9I	GGNCC	3 cut(s)	288, 439, 819
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	288, 439
BaeGI	GKGCMC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	49, 98, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	49, 98
BbvI	GCAGC	1 cut(s)	691
BceAI	ACGGC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	828, 833
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	3 cut(s)	82, 238, 705
BlsI	GCNGC	3 cut(s)	83, 239, 706
Bme18I	GGWCC	2 cut(s)	288, 439
BmgBI	CACGTC	1 cut(s)	476
BmgT120I	GGNCC	3 cut(s)	288, 439, 819
BmiI	GGNNCC	3 cut(s)	199, 309, 440
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	799, 863, 906
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	200
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	691
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	84, 170, 636, 820
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	49, 98
BsiSI	CCGG	2 cut(s)	85, 191
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	84, 170, 636, 820
Bsp1286I	GDGCHC	4 cut(s)	49, 98, 200, 312
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	24, 220, 243, 297
BspACI	CCGC	4 cut(s)	81, 235, 238, 684
BspANI	GGCC	4 cut(s)	84, 170, 636, 820
BspCNI	CTCAG	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	199, 309, 440
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	4 cut(s)	24, 220, 243, 297
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	148, 400, 694
Bst6I	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	224, 464
BstF5I	GGATG	3 cut(s)	799, 863, 906
BstKTI	GATC	4 cut(s)	27, 223, 246, 300
BstMBI	GATC	4 cut(s)	24, 220, 243, 297
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 160
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	691
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	84, 170, 636, 820
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	799, 863, 906
BtsI	GCAGTG	2 cut(s)	290, 780
BtsIMutI	CAGTG	3 cut(s)	290, 699, 780
Cac8I	GCNNGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	288, 439, 819
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	76, 583, 916
CviAII	CATG	6 cut(s)	139, 166, 385, 539, 814, 851
CviQI	GTAC	3 cut(s)	76, 583, 916
DdeI	CTNAG	2 cut(s)	224, 464
DpnI	GATC	4 cut(s)	26, 222, 245, 299
DpnII	GATC	4 cut(s)	24, 220, 243, 297
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
EarI	CTCTTC	5 cut(s)	214, 266, 416, 657, 906
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	47, 96
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	3 cut(s)	49, 98, 312
Eco47I	GGWCC	2 cut(s)	288, 439
Eco52I	CGGCCG	1 cut(s)	82
Eco53kI	GAGCTC	2 cut(s)	47, 96
EcoICRI	GAGCTC	2 cut(s)	47, 96
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	2 cut(s)	799, 906
EcoT38I	GRGCYC	3 cut(s)	49, 98, 312
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
FaiI	YATR	9 cut(s)	140, 167, 323, 325, 386, 540, 567, 815, 852
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	6 cut(s)	138, 165, 384, 538, 813, 850
FblI	GTMKAC	3 cut(s)	107, 395, 890
Fnu4HI	GCNGC	3 cut(s)	82, 238, 705
FokI	GGATG	3 cut(s)	806, 870, 913
FriOI	GRGCYC	3 cut(s)	49, 98, 312
Fsp4HI	GCNGC	3 cut(s)	82, 238, 705
FspBI	CTAG	2 cut(s)	828, 833
GluI	GCNGC	3 cut(s)	82, 238, 705
HaeIII	GGCC	4 cut(s)	84, 170, 636, 820
HapII	CCGG	2 cut(s)	85, 191
HgaI	GACGC	1 cut(s)	845
Hin1II	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
HincII	GTYRAC	2 cut(s)	108, 396
HindII	GTYRAC	2 cut(s)	108, 396
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	177, 206
HpaII	CCGG	2 cut(s)	85, 191
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	6 cut(s)	108, 114, 288, 396, 761, 891
Hpy188I	TCNGA	9 cut(s)	24, 29, 44, 159, 176, 443, 657, 670, 751
Hpy188III	TCNNGA	3 cut(s)	191, 833, 908
Hpy8I	GTNNAC	6 cut(s)	108, 114, 288, 396, 761, 891
Hpy99I	CGWCG	2 cut(s)	112, 206
HpyAV	CCTTC	5 cut(s)	61, 181, 241, 539, 674
HpyCH4III	ACNGT	3 cut(s)	148, 400, 694
HpyCH4IV	ACGT	3 cut(s)	110, 458, 475
HpyCH4V	TGCA	5 cut(s)	590, 773, 797, 850, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 160
HpyF3I	CTNAG	2 cut(s)	224, 464
HpySE526I	ACGT	3 cut(s)	110, 458, 475
Hsp92II	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	24, 220, 243, 297
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	4 cut(s)	44, 93, 307, 810
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
MaeI	CTAG	2 cut(s)	828, 833
MaeII	ACGT	3 cut(s)	110, 458, 475
MaeIII	GTNAC	2 cut(s)	87, 875
MalI	GATC	4 cut(s)	26, 222, 245, 299
MboI	GATC	4 cut(s)	24, 220, 243, 297
MboII	GAAGA	7 cut(s)	201, 283, 359, 433, 644, 689, 923
MhlI	GDGCHC	4 cut(s)	49, 98, 200, 312
MluCI	AATT	4 cut(s)	6, 331, 555, 743
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	8 cut(s)	30, 66, 187, 253, 390, 464, 626, 810
Mph1103I	ATGCAT	2 cut(s)	799, 906
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	549
MspI	CCGG	2 cut(s)	85, 191
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	139, 160
NdeII	GATC	4 cut(s)	24, 220, 243, 297
NlaIII	CATG	6 cut(s)	142, 169, 388, 542, 817, 854
NlaIV	GGNNCC	3 cut(s)	199, 309, 440
NsiI	ATGCAT	2 cut(s)	799, 906
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	83, 239, 706
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	401
Psp124BI	GAGCTC	2 cut(s)	49, 98
PspN4I	GGNNCC	3 cut(s)	199, 309, 440
PspPI	GGNCC	3 cut(s)	288, 439, 819
RsaI	GTAC	3 cut(s)	77, 584, 917
RsaNI	GTAC	3 cut(s)	76, 583, 916
SacI	GAGCTC	2 cut(s)	49, 98
SalI	GTCGAC	2 cut(s)	106, 394
SapI	GCTCTTC	1 cut(s)	416
SatI	GCNGC	3 cut(s)	82, 238, 705
Sau3AI	GATC	4 cut(s)	24, 220, 243, 297
Sau96I	GGNCC	3 cut(s)	288, 439, 819
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	4 cut(s)	49, 98, 200, 312
SfaNI	GCATC	9 cut(s)	120, 150, 577, 784, 814, 848, 848, 891, 913
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	288, 439
Sse9I	AATT	4 cut(s)	6, 331, 555, 743
SsiI	CCGC	4 cut(s)	81, 235, 238, 684
SspMI	CTAG	2 cut(s)	828, 833
SstI	GAGCTC	2 cut(s)	49, 98
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	148, 400, 694
TaiI	ACGT	3 cut(s)	113, 461, 478
TaqI	TCGA	5 cut(s)	98, 107, 128, 395, 405
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	4 cut(s)	6, 331, 555, 743
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	2 cut(s)	84, 240
TfiI	GAWTC	1 cut(s)	177
TscAI	CASTG	3 cut(s)	290, 699, 780
TseI	GCWGC	1 cut(s)	704
TspDTI	ATGAA	4 cut(s)	127, 310, 582, 756
TspGWI	ACGGA	2 cut(s)	106, 655
TspRI	CASTG	3 cut(s)	290, 699, 780
VpaK11BI	GGWCC	2 cut(s)	288, 439
XapI	RAATTY	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	12, 569
XmiI	GTMKAC	3 cut(s)	107, 395, 890
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	828, 833
Zsp2I	ATGCAT	2 cut(s)	799, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.