Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Forward (+)

7231981 .. 7233657

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTTCCATTAGTAGCTTACACAGATGGGCATCTAATCAACACTCTCGTCTTCCTCGAATCACTTCTATTTCTGAGGCTGACCAATCTCGACCCATTAACCAAGTCGTCGCCTTTTCGGTTCCTATATCCAGAAGAGACGCGAGTATTATTCTTCTCAGCTCGATTCCATTGACAAGCTTCTTCGTTCTAACACCGAGCTCTTCCGAAGCTAGAGAGAGACGTAGCAGAAAAGTTATCCCTCTCGAGGAATATTCCACTGGCCCTGAAGGGTTGAAATTCTATGACATTGAGGAAGGCAAAGGTCCAGTAGCAACAGAGGGATCAACTGCTCAGGTGCATTTTGATTGCCGTTACAGAAGCATCACTGCAATTTCTACCCGAGAATCCAAGCTTTTAGCTGGAAACCGTAGTATTGCTCAGCCTTACGAGTTCAAGGTGGGATCTACGCCAGGAAAGGAAAGGAAGCGTGAATTCGTTGATAATCCAAATGGGTTATTCTCTGCACAGGCTGCACCAAAACCTCCTCCAGCAATGTATTTCATTACCGAAGGAATGAAAGTCGGAGGCAAGAGAACGGTGATTGTTCCTCCTGAAGCTGGTTATGGTCAGAAAGGAATGAATGAGATACCGCCTGGAGCTACTTTTGAGTTAAACATAGAGCTGCTTCGGGTGACTCCTCCACCAGAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

232

Amino Acids

25.53

Weight (kDa)

9.35

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	105 - 223	1.2e-12	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	632
AclWI	GGATC	2 cut(s)	331, 451
AcsI	RAATTY	2 cut(s)	278, 473
AcuI	CTGAAG	2 cut(s)	288, 615
AfiI	CCNNNNNNNGG	2 cut(s)	247, 599
AgsI	TTSAA	2 cut(s)	277, 436
AjnI	CCWGG	2 cut(s)	451, 634
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	132, 214
AlwI	GGATC	2 cut(s)	331, 451
Ama87I	CYCGRG	2 cut(s)	245, 381
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	2 cut(s)	512, 664
ApoI	RAATTY	2 cut(s)	278, 473
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	263, 305
AsuHPI	GGTGA	2 cut(s)	592, 685
AvaI	CYCGRG	2 cut(s)	245, 381
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	499, 651
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	2 cut(s)	453, 636
BcoDI	GTCTC	2 cut(s)	132, 214
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	513, 665
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	2 cut(s)	514, 666
Bme1390I	CCNGG	2 cut(s)	453, 636
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	2 cut(s)	245, 381
BmgT120I	GGNCC	2 cut(s)	263, 305
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	453, 636
BmsI	GCATC	2 cut(s)	41, 372
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	513, 657
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 599
Bse1I	ACTGG	2 cut(s)	265, 308
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	453, 636
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	247, 599
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	4 cut(s)	66, 172, 347, 434
BseNI	ACTGG	2 cut(s)	265, 308
BseRI	GAGGAG	2 cut(s)	516, 669
BseXI	GCAGC	2 cut(s)	499, 651
BsgI	GTGCAG	2 cut(s)	489, 498
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	245, 381
BslI	CCNNNNNNNGG	2 cut(s)	247, 599
BsmAI	GTCTC	2 cut(s)	132, 214
BsmBI	CGTCTC	2 cut(s)	132, 214
BsnI	GGCC	1 cut(s)	264
BsoBI	CYCGRG	2 cut(s)	245, 381
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	323, 443
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	4 cut(s)	67, 171, 346, 433
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	331, 451
BspQI	GCTCTTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	265, 308
BssMI	GATC	2 cut(s)	323, 443
Bst2UI	CCWGG	2 cut(s)	453, 636
Bst4CI	ACNGT	2 cut(s)	410, 580
Bst6I	CTCTTC	3 cut(s)	130, 208, 684
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstDEI	CTNAG	4 cut(s)	75, 158, 333, 420
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	326, 446
BstMAI	GTCTC	2 cut(s)	132, 214
BstMBI	GATC	2 cut(s)	323, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	453, 636
BstSCI	CCNGG	2 cut(s)	451, 634
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	499, 651
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	258, 366
Cfr13I	GGNCC	2 cut(s)	263, 305
CseI	GACGC	1 cut(s)	149
DdeI	CTNAG	4 cut(s)	75, 158, 333, 420
DpnI	GATC	2 cut(s)	325, 445
DpnII	GATC	2 cut(s)	323, 443
Eam1104I	CTCTTC	3 cut(s)	130, 208, 684
EarI	CTCTTC	3 cut(s)	130, 208, 684
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	288, 615
Eco88I	CYCGRG	2 cut(s)	245, 381
EcoICRI	GAGCTC	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	451, 634
EcoT38I	GRGCYC	1 cut(s)	203
Esp3I	CGTCTC	2 cut(s)	132, 214
FaiI	YATR	4 cut(s)	128, 285, 606, 659
Fnu4HI	GCNGC	2 cut(s)	513, 665
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	513, 665
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	513, 665
GsuI	CTGGAG	2 cut(s)	513, 657
HaeIII	GGCC	1 cut(s)	264
HgaI	GACGC	1 cut(s)	149
HindIII	AAGCTT	2 cut(s)	178, 392
HinfI	GANTC	4 cut(s)	60, 166, 386, 676
HphI	GGTGA	2 cut(s)	592, 685
Hpy188I	TCNGA	4 cut(s)	76, 208, 566, 612
Hpy188III	TCNNGA	4 cut(s)	90, 132, 245, 593
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	263, 290, 545
HpyCH4III	ACNGT	2 cut(s)	410, 580
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	340, 371, 506, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	75, 158, 333, 420
HpySE526I	ACGT	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	323, 443
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	638
Lsp1109I	GCAGC	2 cut(s)	499, 651
LweI	GCATC	2 cut(s)	41, 372
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	353, 673
MalI	GATC	2 cut(s)	325, 445
MboI	GATC	2 cut(s)	323, 443
MboII	GAAGA	5 cut(s)	44, 146, 147, 175, 195
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	278, 372, 473
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	2 cut(s)	99, 653
MspR9I	CCNGG	2 cut(s)	453, 636
MvaI	CCWGG	2 cut(s)	453, 636
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	2 cut(s)	323, 443
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	60, 166, 386
PkrI	GCNGC	2 cut(s)	514, 666
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	451, 634
PspGI	CCWGG	2 cut(s)	451, 634
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	2 cut(s)	263, 305
PsuI	RGATCY	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	99, 653
SatI	GCNGC	2 cut(s)	513, 665
Sau3AI	GATC	2 cut(s)	323, 443
Sau96I	GGNCC	2 cut(s)	263, 305
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	453, 636
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	41, 372
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	278, 372, 473
SsiI	CCGC	1 cut(s)	632
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	451, 634
TaaI	ACNGT	2 cut(s)	410, 580
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	58, 91, 164, 246
TasI	AATT	3 cut(s)	278, 372, 473
TfiI	GAWTC	3 cut(s)	60, 166, 386
Tru1I	TTAA	2 cut(s)	99, 653
Tru9I	TTAA	2 cut(s)	99, 653
TscAI	CASTG	2 cut(s)	265, 373
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	512, 664
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	3 cut(s)	532, 572, 635
TspRI	CASTG	2 cut(s)	265, 373
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	2 cut(s)	278, 473
XhoI	CTCGAG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.