Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Reverse (-)

749989 .. 752304

Gene Structure 2316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCATCAATAAGGTGCTTGACCGTTAATCACCCTCATCATTATCATCCACGGTTGAGTTCAAGTTCAAAACCCAGCAAAAGCACAAGCCAAGTAGTAGACAAGGCAGAGCAAGTGGTTCGAGTTTCAGTTCCCATTTCCTCATTGATTTCAAGAAGATGTGCGATTCTGATCACTTGGCTGCCTCTGAGCCTCATTTCAGCGTCTCCGCCTTCGGAGGCCAGAGAGAGACGCAACAGGAAAGTCATTCCTCTTGAAGACTACCGCACCACCCCAGCTGATGGATTGAAATATTATGATTTGGTTGAGGGAAAGGGTCCAGTAGCTGAGAAAGGATCAACGGTTGAGGTTCACTTTGACTGTTTATATCGTGGGATTACGGCTGTATCAAGCAGGGAATCTAAACTCTTGGCTGGAAATCGTAGTATTGCCCAGCCATACGTGTTCAAAGTCGGAGCTCCTCCTGGGAAAGAACGAAAGCGTGAGTTTGTGGACAATGCAAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCTCAAGCAATGTACTCGGTAACTGAGGGGATGAAAGTAGGGGGGAAGCGAACTGTGATTGTTCCTCCTGAGGCTGGGTACGGTCTAAAGGGCATGAATGAGATCCCTCCTGGAGCGACATTCGAGCTAAATTTGGAGCTTTTGCAAGTGATTCCACCTGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

236

Amino Acids

25.63

Weight (kDa)

9.58

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	209, 265
AclWI	GGATC	2 cut(s)	343, 634
AcsI	RAATTY	1 cut(s)	667
AfaI	GTAC	2 cut(s)	551, 617
AfiI	CCNNNNNNNGG	3 cut(s)	281, 611, 698
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	6 cut(s)	63, 69, 153, 257, 289, 448
AjnI	CCWGG	2 cut(s)	463, 646
AluBI	AGCT	6 cut(s)	278, 326, 458, 524, 664, 676
AluI	AGCT	6 cut(s)	278, 326, 458, 524, 664, 676
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	2 cut(s)	210, 223
AlwI	GGATC	2 cut(s)	343, 634
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	181, 524
ApoI	RAATTY	1 cut(s)	667
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	606
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	168, 511
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 534, 568
BciT130I	CCWGG	2 cut(s)	465, 648
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	210, 223
BisI	GCNGC	2 cut(s)	182, 525
BlsI	GCNGC	2 cut(s)	183, 526
Bme1390I	CCNGG	2 cut(s)	465, 648
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	465, 648
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	50, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 611, 698
Bse1I	ACTGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	465, 648
BseDI	CCNNGG	2 cut(s)	50, 464
BseGI	GGATG	2 cut(s)	46, 573
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	281, 611, 698
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	4 cut(s)	179, 318, 552, 597
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	168, 511
BseYI	CCCAGC	4 cut(s)	74, 274, 432, 611
BsgI	GTGCAG	2 cut(s)	501, 510
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	281, 611, 698
BsmAI	GTCTC	2 cut(s)	210, 223
BsmBI	CGTCTC	2 cut(s)	210, 223
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	171, 335, 639
BspACI	CCGC	2 cut(s)	209, 265
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	4 cut(s)	180, 319, 553, 598
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	343, 634
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	50, 464
BssMI	GATC	3 cut(s)	171, 335, 639
Bst2UI	CCWGG	2 cut(s)	465, 648
Bst4CI	ACNGT	6 cut(s)	25, 54, 343, 362, 592, 620
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	188, 327, 561, 606
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	46, 573
BstKTI	GATC	3 cut(s)	174, 338, 642
BstMAI	GTCTC	2 cut(s)	210, 223
BstMBI	GATC	3 cut(s)	171, 335, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	2 cut(s)	465, 648
BstSCI	CCNGG	2 cut(s)	463, 646
BstV1I	GCAGC	2 cut(s)	168, 511
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	639
Bsu36I	CCTNAGG	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	46, 573
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	2 cut(s)	192, 240
Csp6I	GTAC	2 cut(s)	550, 616
CviAII	CATG	1 cut(s)	631
CviQI	GTAC	2 cut(s)	550, 616
DdeI	CTNAG	4 cut(s)	188, 327, 561, 606
DpnI	GATC	3 cut(s)	173, 337, 641
DpnII	GATC	3 cut(s)	171, 335, 639
EciI	GGCGGA	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	463, 646
EcoT38I	GRGCYC	1 cut(s)	460
Esp3I	CGTCTC	2 cut(s)	210, 223
FaeI	CATG	1 cut(s)	634
FaiI	YATR	4 cut(s)	297, 367, 439, 632
FatI	CATG	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	182, 525
FokI	GGATG	2 cut(s)	33, 580
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	182, 525
GluI	GCNGC	2 cut(s)	182, 525
GsaI	CCCAGC	4 cut(s)	78, 278, 436, 615
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	221
HgaI	GACGC	2 cut(s)	192, 240
Hin1II	CATG	1 cut(s)	634
HinfI	GANTC	3 cut(s)	166, 398, 688
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	100, 352, 493
Hpy188I	TCNGA	4 cut(s)	171, 189, 217, 455
Hpy188III	TCNNGA	3 cut(s)	153, 254, 605
Hpy8I	GTNNAC	3 cut(s)	100, 352, 493
HpyAV	CCTTC	2 cut(s)	222, 692
HpyCH4III	ACNGT	6 cut(s)	25, 54, 343, 362, 592, 620
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	4 cut(s)	500, 518, 527, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	4 cut(s)	188, 327, 561, 606
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	171, 335, 639
LmnI	GCTCC	4 cut(s)	455, 463, 650, 673
Lsp1109I	GCAGC	2 cut(s)	168, 511
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	3 cut(s)	173, 337, 641
MboI	GATC	3 cut(s)	171, 335, 639
MboII	GAAGA	2 cut(s)	168, 269
MflI	RGATCY	1 cut(s)	639
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	433
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	465, 648
MvaI	CCWGG	2 cut(s)	465, 648
MwoI	GCNNNNNNNGC	1 cut(s)	524
NdeII	GATC	3 cut(s)	171, 335, 639
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	166, 398, 688
PflMI	CCANNNNNTGG	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	183, 526
Ppu21I	YACGTR	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	463, 646
PspFI	CCCAGC	4 cut(s)	74, 274, 432, 611
PspGI	CCWGG	2 cut(s)	463, 646
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	639
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	551, 617
RsaNI	GTAC	2 cut(s)	550, 616
SacI	GAGCTC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	182, 525
Sau3AI	GATC	3 cut(s)	171, 335, 639
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	465, 648
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	2 cut(s)	209, 265
SspI	AATATT	1 cut(s)	293
SstI	GAGCTC	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	463, 646
TaaI	ACNGT	6 cut(s)	25, 54, 343, 362, 592, 620
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	121, 660
TasI	AATT	1 cut(s)	667
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	3 cut(s)	166, 398, 688
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	2 cut(s)	181, 524
TspDTI	ATGAA	2 cut(s)	584, 647
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.