Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Forward (+)

12763595 .. 12767648

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0160100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCATACACGAGAGCAAAAAGGTCTGCTTCACCTCAGACCTCTGTCTCACCTGTCAAAGGCCGCCGATCAAGATCATTGTCGAGGTCTAGAAGGAGTCGTTCTAGGAGCCCATCTGTGGATGCAAACAATCCTGGAAACAACTTGTATGTAACAGGCTTATCCACAAGGGTTACCTCTGCTGATGTTGAGAAATTCTTTAACAAAGAAGGCAAGGTGTTGGAGTGCCATCTTGTAACTGACCCTCGCTCCAGAGAATCTCGTGGATTTGCATTTGTCACAATGGAAACTGTAGAGGATGCAGAGCGATGCATTAAGTACTTGAATCGTTCTGTGCTTGAAGGTCGACTAGTCACTGTGGAAAAGGCGAAGAGGAAGCGAGGGAGGACACCTACTCCAGGAAGGTATCAAGGCTTGAGAGATAAGCGAGGACGTGATCGTGGAGATCGTGATTATGGTGATCGTGACCGTGACCGTGACCGTGATCGTAGAAGATCTCGTAGCTATTCACCTCGTAGGCGGAAAGACAGAGAGCCTCCTTCCAGGGACAACCGCCGAGGAAGATCACGTTCTCCACCAGCTAGGGATAGGAGGGTGGATGAGCATTCAGACTCGTATAGGAGGCGCATGGATCACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

213

Amino Acids

24.95

Weight (kDa)

11.39

Isoelectric Point (pI)

91.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 118	8.6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	346
AciI	CCGC	3 cut(s)	64, 520, 553
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
AgsI	TTSAA	2 cut(s)	325, 341
AhlI	ACTAGT	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	3 cut(s)	133, 397, 542
AluBI	AGCT	2 cut(s)	504, 581
AluI	AGCT	2 cut(s)	504, 581
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	627
AsuHPI	GGTGA	4 cut(s)	24, 42, 470, 501
BanII	GRGCYC	1 cut(s)	113
BauI	CACGAG	2 cut(s)	10, 261
BccI	CCATC	2 cut(s)	121, 237
BciT130I	CCWGG	3 cut(s)	135, 399, 544
BcoDI	GTCTC	1 cut(s)	52
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	4 cut(s)	90, 105, 350, 582
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	3 cut(s)	135, 399, 544
BmgBI	CACGTC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	3 cut(s)	135, 399, 544
BmsI	GCATC	3 cut(s)	112, 289, 299
BoxI	GACNNNNGTC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	235, 381
BpuEI	CTTGAG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	543, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 379, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 118, 398
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	3 cut(s)	135, 399, 544
BseDI	CCNNGG	2 cut(s)	543, 556
BseGI	GGATG	3 cut(s)	127, 304, 604
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
BseMII	CTCAG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	59, 118, 398
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
BspACI	CCGC	3 cut(s)	64, 520, 553
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	639
BssECI	CCNNGG	2 cut(s)	543, 556
BssMI	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
BssSI	CACGAG	2 cut(s)	10, 261
Bst2BI	CACGAG	2 cut(s)	10, 261
Bst2UI	CCWGG	3 cut(s)	135, 399, 544
Bst4CI	ACNGT	5 cut(s)	292, 358, 470, 476, 482
Bst6I	CTCTTC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	172
BstENI	CCTNNNNNAGG	2 cut(s)	57, 396
BstF5I	GGATG	3 cut(s)	127, 304, 604
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	9 cut(s)	71, 77, 439, 448, 463, 487, 497, 566, 634
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
BstNI	CCWGG	3 cut(s)	135, 399, 544
BstPAI	GACNNNNGTC	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	133, 397, 542
BstSFI	CTRYAG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	127, 304, 604
BtsIMutI	CAGTG	1 cut(s)	354
CfoI	GCGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	628
CviJI	RGCY	7 cut(s)	63, 111, 159, 414, 504, 535, 581
CviKI_1	RGCY	7 cut(s)	63, 111, 159, 414, 504, 535, 581
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	9 cut(s)	70, 76, 438, 447, 462, 486, 496, 565, 633
DpnII	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	113
Eco91I	GGTNACC	1 cut(s)	172
EcoNI	CCTNNNNNAGG	2 cut(s)	57, 396
EcoO65I	GGTNACC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	133, 397, 542
EcoT22I	ATGCAT	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	113
FaeI	CATG	1 cut(s)	631
FaiI	YATR	5 cut(s)	7, 150, 456, 618, 629
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	1 cut(s)	627
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	3 cut(s)	134, 311, 611
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	4 cut(s)	90, 105, 350, 582
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	1 cut(s)	64
GsuI	CTGGAG	2 cut(s)	235, 381
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	1 cut(s)	631
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	97, 257, 325, 611
HphI	GGTGA	4 cut(s)	24, 42, 470, 501
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	39, 610
Hpy188III	TCNNGA	6 cut(s)	72, 90, 252, 449, 464, 639
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	87, 203, 335, 396, 549
HpyCH4III	ACNGT	5 cut(s)	292, 358, 470, 476, 482
HpyCH4IV	ACGT	2 cut(s)	433, 568
HpyCH4V	TGCA	4 cut(s)	125, 272, 302, 312
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	433, 568
Hsp92II	CATG	1 cut(s)	631
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
LmnI	GCTCC	2 cut(s)	108, 254
LweI	GCATC	3 cut(s)	112, 289, 299
MaeI	CTAG	4 cut(s)	90, 105, 350, 582
MaeII	ACGT	2 cut(s)	433, 568
MaeIII	GTNAC	8 cut(s)	151, 172, 235, 277, 352, 464, 470, 476
MalI	GATC	9 cut(s)	70, 76, 438, 447, 462, 486, 496, 565, 633
MboI	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
MboII	GAAGA	3 cut(s)	382, 504, 573
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	106, 605
MmeI	TCCRAC	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	2 cut(s)	201, 315
MspR9I	CCNGG	3 cut(s)	135, 399, 544
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	3 cut(s)	135, 399, 544
NdeII	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	5 cut(s)	277, 352, 464, 470, 476
NsiI	ATGCAT	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	257, 325
PfoI	TCCNGGA	2 cut(s)	133, 397
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	105, 605
PpsI	GAGTC	2 cut(s)	105, 605
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	133, 397, 542
PspEI	GGTNACC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	133, 397, 542
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	201, 315
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	9 cut(s)	68, 74, 436, 445, 460, 484, 494, 563, 631
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	106, 605
ScrFI	CCNGG	3 cut(s)	135, 399, 544
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	112, 289, 299
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	64, 520, 553
SspMI	CTAG	4 cut(s)	90, 105, 350, 582
StyD4I	CCNGG	3 cut(s)	133, 397, 542
TaaI	ACNGT	5 cut(s)	292, 358, 470, 476, 482
TaiI	ACGT	2 cut(s)	436, 571
TaqI	TCGA	2 cut(s)	83, 346
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	257, 325
Tru1I	TTAA	2 cut(s)	201, 315
Tru9I	TTAA	2 cut(s)	201, 315
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	5 cut(s)	277, 352, 464, 470, 476
Tsp45I	GTSAC	5 cut(s)	277, 352, 464, 470, 476
TspRI	CASTG	1 cut(s)	361
XagI	CCTNNNNNAGG	2 cut(s)	57, 396
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	4 cut(s)	90, 105, 350, 582
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.