Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Forward (+)

32545880 .. 32548211

Gene Structure 2332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCATCATCAATAAGGTGCTTGCAGTTGCACCCCCAAATCCAGTTCACCGCTTCAACTTGGAAACCCAGTAACACTAGGAGAAGCCAAGTCCAAGTAGTCAAGGCAGAGCAGCAAAATGAAGCAGCCATTTCAAGAAGATCGTGCGCCAATATTCTCATCACTTGGCTGCCTGCTTTGACCCTCATTTCGGCGTCTCCGCCGTCGTCGGAGGCCAGAGAGAGACGCAACAGGAAAGTCATCCCTCTTGAGGACTACAGTACTACCCCTGATGGATTGAAATATTATGATTTGGTTGAGGGAAAGGGTCCAGTAGCTGAGAAAGGATCAACAGTTCAGGTTCACTTTGATTGCCTATATCGTGGGATTACCGCTGTATCAAGCAGGGAATCTAAAATCTTGGCTGGAAATCGTATTATTGCCCAGCCATACGTCTTCAAAGTTGGCGCTACTCCAGGGAAGGAACGAAAGCGAGAGTTTGTGGACAACGCAAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCACGAGCAATGTACTCGGTAACTGAAGGGATGAAAGTAGGGGGGAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGATATGGCCCAAAGGGCATGAATGAGATTCCTCCTGGAGCAACGTTTGAGCTAAATCTGGAGCTTTTGCAGCTGAATCCACCTTCAAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

9.65

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	106 - 224	7.2e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	602
AciI	CCGC	3 cut(s)	51, 200, 372
AclI	AACGTT	1 cut(s)	647
AclWI	GGATC	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	262, 542
AfiI	CCNNNNNNNGG	3 cut(s)	190, 250, 602
AgsI	TTSAA	5 cut(s)	57, 135, 280, 439, 690
AjnI	CCWGG	2 cut(s)	454, 637
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	5 cut(s)	317, 515, 655, 667, 676
AluI	AGCT	5 cut(s)	317, 515, 655, 667, 676
Alw26I	GTCTC	2 cut(s)	201, 217
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	2 cut(s)	317, 602
AoxI	GGCC	2 cut(s)	213, 610
ApeKI	GCWGC	5 cut(s)	112, 125, 169, 515, 673
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	2 cut(s)	149, 449
AspS9I	GGNCC	2 cut(s)	308, 611
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	5 cut(s)	124, 137, 156, 502, 685
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	2 cut(s)	456, 639
BcoDI	GTCTC	2 cut(s)	201, 217
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	450
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	5 cut(s)	113, 126, 170, 516, 674
BlsI	GCNGC	5 cut(s)	114, 127, 171, 517, 675
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	456, 639
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	308, 611
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	456, 639
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	4 cut(s)	438, 579, 660, 683
BpuEI	CTTGAG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 250, 602
Bse1I	ACTGG	3 cut(s)	43, 69, 311
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	456, 639
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	240, 564
BseLI	CCNNNNNNNGG	3 cut(s)	190, 250, 602
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	3 cut(s)	43, 69, 311
BseXI	GCAGC	5 cut(s)	124, 137, 156, 502, 685
BseYI	CCCAGC	1 cut(s)	423
BsgI	GTGCAG	2 cut(s)	492, 501
BshFI	GGCC	2 cut(s)	215, 612
BslI	CCNNNNNNNGG	3 cut(s)	190, 250, 602
BsmAI	GTCTC	2 cut(s)	201, 217
BsmBI	CGTCTC	2 cut(s)	201, 217
BsnI	GGCC	2 cut(s)	215, 612
Bsp143I	GATC	2 cut(s)	140, 326
BspACI	CCGC	3 cut(s)	51, 200, 372
BspANI	GGCC	2 cut(s)	215, 612
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	43, 69, 311
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	2 cut(s)	140, 326
BssNI	GRCGYC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	456, 639
Bst4CI	ACNGT	3 cut(s)	260, 334, 583
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	23, 174
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	240, 564
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	149, 449
BstKTI	GATC	2 cut(s)	143, 329
BstMAI	GTCTC	2 cut(s)	201, 217
BstMBI	GATC	2 cut(s)	140, 326
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 618, 673
BstNI	CCWGG	2 cut(s)	456, 639
BstSCI	CCNGG	2 cut(s)	454, 637
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	5 cut(s)	124, 137, 156, 502, 685
BstV2I	GAAGAC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	215, 612
BtsCI	GGATG	2 cut(s)	240, 564
Cac8I	GCNNGC	2 cut(s)	23, 174
CaiI	CAGNNNCTG	2 cut(s)	317, 602
CfoI	GCGC	2 cut(s)	149, 449
Cfr13I	GGNCC	2 cut(s)	308, 611
CseI	GACGC	2 cut(s)	183, 234
Csp6I	GTAC	2 cut(s)	261, 541
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	2 cut(s)	261, 541
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	142, 328
DpnII	GATC	2 cut(s)	140, 326
EciI	GGCGGA	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	454, 637
Esp3I	CGTCTC	2 cut(s)	201, 217
FaeI	CATG	1 cut(s)	625
FaiI	YATR	5 cut(s)	288, 358, 430, 609, 623
FatI	CATG	1 cut(s)	621
Fnu4HI	GCNGC	5 cut(s)	113, 126, 170, 516, 674
FokI	GGATG	2 cut(s)	227, 571
Fsp4HI	GCNGC	5 cut(s)	113, 126, 170, 516, 674
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	148, 448
GluI	GCNGC	5 cut(s)	113, 126, 170, 516, 674
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	4 cut(s)	438, 579, 660, 683
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	215, 612
HgaI	GACGC	2 cut(s)	183, 234
HhaI	GCGC	2 cut(s)	149, 449
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	2 cut(s)	147, 447
HinP1I	GCGC	2 cut(s)	147, 447
HinfI	GANTC	3 cut(s)	389, 631, 679
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	48, 343, 484
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	5 cut(s)	135, 248, 596, 662, 690
Hpy8I	GTNNAC	3 cut(s)	48, 343, 484
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	3 cut(s)	454, 548, 696
HpyCH4III	ACNGT	3 cut(s)	260, 334, 583
HpyCH4IV	ACGT	2 cut(s)	432, 647
HpyCH4V	TGCA	5 cut(s)	25, 31, 509, 518, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 618, 673
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	2 cut(s)	432, 647
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	2 cut(s)	147, 447
Kzo9I	GATC	2 cut(s)	140, 326
LmnI	GCTCC	2 cut(s)	641, 664
Lsp1109I	GCAGC	5 cut(s)	124, 137, 156, 502, 685
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	2 cut(s)	432, 647
MaeIII	GTNAC	2 cut(s)	71, 547
MalI	GATC	2 cut(s)	142, 328
MboI	GATC	2 cut(s)	140, 326
MboII	GAAGA	2 cut(s)	150, 427
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	194, 205, 244, 255, 292, 592, 603, 645
MspA1I	CMGCKG	2 cut(s)	374, 676
MspR9I	CCNGG	2 cut(s)	456, 639
MvaI	CCWGG	2 cut(s)	456, 639
MwoI	GCNNNNNNNGC	3 cut(s)	515, 618, 673
NdeII	GATC	2 cut(s)	140, 326
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	389, 631, 679
PflMI	CCANNNNNTGG	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	114, 127, 171, 517, 675
Psp1406I	AACGTT	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	454, 637
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	2 cut(s)	454, 637
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	308, 611
PstNI	CAGNNNCTG	2 cut(s)	317, 602
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	2 cut(s)	262, 542
RsaNI	GTAC	2 cut(s)	261, 541
SatI	GCNGC	5 cut(s)	113, 126, 170, 516, 674
Sau3AI	GATC	2 cut(s)	140, 326
Sau96I	GGNCC	2 cut(s)	308, 611
ScaI	AGTACT	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	456, 639
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SsiI	CCGC	3 cut(s)	51, 200, 372
SspI	AATATT	2 cut(s)	154, 284
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	454, 637
TaaI	ACNGT	3 cut(s)	260, 334, 583
TaiI	ACGT	2 cut(s)	435, 650
TatI	WGTACW	2 cut(s)	260, 540
TfiI	GAWTC	3 cut(s)	389, 631, 679
TseI	GCWGC	5 cut(s)	112, 125, 169, 515, 673
TspDTI	ATGAA	3 cut(s)	135, 575, 638
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	308
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.