Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Forward (+)

17366409 .. 17368945

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25880.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCATCATCACCAATAAGATGCTTGCATCTGCAGTTGCAGTTGCACCACCAAACCCAGTTCACGGCCAGTTCAACTTGGAAACCCGGTAACACTAGGAGAAGCCAAGTTCAAGTAGTCAAGGCAGAGCAGCAAAATGAAGCAGGCATTTCAAGAAGATCATGCGCCAATATTCTCATCATGACTTGGCTGCCGGCCCTGACCCTCATTTCGGCTTCTCCAGCGTCCGCGGAGGCCAGACTGAGACGCAACAGGAAAGCCATCCCTCTTGAAGACTACAGTACTACCCCAGCTGAAGGATTAAAATATTATGATTTGGTTGAAGGAAGGGGTCCAGTAGCTGAGAAAGGATCAACAGTTCAGGTTCACTTCGAATGCTTATATCGTGGGATAACAGCTGTATCAAGCAGGGAATCCAAAATCTTGGCTGGAAATCGTATTATTTCCCAGCCATACATCTTCAAAGTTGGCTCACCTCCAGGGAAAGAACGAAAGCGAGAGTTTGTGGATAACGCAAATGGTCTATTTTCCGCACAAGCTGCACCAAAACCCCCTCGAGCAATGTACTCAGTAACTGAAGGGATGAAAGTAGGAGGGAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGATATGGCCCAAAGGGCATGAATGAGATCCCTCCTGGAGCAACGTTTGAGCTGAATCTGGAGCTTTTGCAAGTGGATCCACCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

239

Amino Acids

26.04

Weight (kDa)

9.68

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	228, 230, 531
AclI	AACGTT	1 cut(s)	671
AclWI	GGATC	4 cut(s)	358, 649, 698, 711
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	315, 597
AfaI	GTAC	2 cut(s)	283, 566
AfiI	CCNNNNNNNGG	4 cut(s)	64, 211, 296, 626
AgsI	TTSAA	6 cut(s)	75, 113, 153, 272, 323, 463
AjnI	CCWGG	2 cut(s)	478, 661
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	6 cut(s)	293, 341, 398, 539, 679, 691
AluI	AGCT	6 cut(s)	293, 341, 398, 539, 679, 691
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	4 cut(s)	358, 649, 698, 711
AlwNI	CAGNNNCTG	3 cut(s)	341, 575, 626
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	4 cut(s)	66, 195, 234, 634
ApeKI	GCWGC	3 cut(s)	130, 190, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	196, 332, 635
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	3, 465
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BamHI	GGATCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	142, 177, 526
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	2 cut(s)	480, 663
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	2 cut(s)	32, 277
BglI	GCCNNNNNGGC	1 cut(s)	642
BisI	GCNGC	3 cut(s)	131, 191, 540
BlsI	GCNGC	3 cut(s)	132, 192, 541
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	3 cut(s)	87, 480, 663
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	3 cut(s)	196, 332, 635
BmiI	GGNNCC	2 cut(s)	333, 705
BmrFI	CCNGG	3 cut(s)	87, 480, 663
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	11, 14, 37
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	5 cut(s)	204, 462, 603, 684, 707
Bpu14I	TTCGAA	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	228, 479
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 211, 296, 626
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	58, 69, 335
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	480, 663
BseDI	CCNNGG	2 cut(s)	228, 479
BseGI	GGATG	2 cut(s)	261, 588
BseLI	CCNNNNNNNGG	4 cut(s)	64, 211, 296, 626
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	233, 333, 582
BseNI	ACTGG	3 cut(s)	58, 69, 335
BseXI	GCAGC	3 cut(s)	142, 177, 526
BseYI	CCCAGC	2 cut(s)	289, 447
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	68, 197, 236, 636
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	87, 194
BslI	CCNNNNNNNGG	4 cut(s)	64, 211, 296, 626
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	68, 197, 236, 636
BsoBI	CYCGRG	1 cut(s)	555
Bsp119I	TTCGAA	1 cut(s)	372
Bsp143I	GATC	4 cut(s)	158, 350, 654, 703
BspACI	CCGC	3 cut(s)	228, 230, 531
BspANI	GGCC	4 cut(s)	68, 197, 236, 636
BspCNI	CTCAG	3 cut(s)	234, 334, 581
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	2 cut(s)	180, 713
BspLI	GGNNCC	2 cut(s)	333, 705
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	4 cut(s)	358, 649, 698, 711
BspT104I	TTCGAA	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	58, 69, 335
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	228, 479
BssMI	GATC	4 cut(s)	158, 350, 654, 703
Bst2UI	CCWGG	2 cut(s)	480, 663
Bst4CI	ACNGT	3 cut(s)	281, 358, 607
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	26, 145, 195
BstDEI	CTNAG	3 cut(s)	242, 342, 568
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	261, 588
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	161, 353, 657, 706
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	158, 350, 654, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 539, 642
BstNI	CCWGG	2 cut(s)	480, 663
BstSCI	CCNGG	3 cut(s)	85, 478, 661
BstSFI	CTRYAG	2 cut(s)	32, 277
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	142, 177, 526
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	654, 703
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	2 cut(s)	654, 703
BsuRI	GGCC	4 cut(s)	68, 197, 236, 636
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	261, 588
Cac8I	GCNNGC	3 cut(s)	26, 145, 195
CaiI	CAGNNNCTG	3 cut(s)	341, 575, 626
CciI	TCATGA	2 cut(s)	180, 713
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	196, 332, 635
Cfr42I	CCGCGG	1 cut(s)	231
CseI	GACGC	2 cut(s)	213, 255
Csp6I	GTAC	2 cut(s)	282, 565
CviAII	CATG	4 cut(s)	162, 181, 646, 714
CviQI	GTAC	2 cut(s)	282, 565
DdeI	CTNAG	3 cut(s)	242, 342, 568
DpnI	GATC	4 cut(s)	160, 352, 656, 705
DpnII	GATC	4 cut(s)	158, 350, 654, 703
EaeI	YGGCCR	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	315, 597
Eco88I	CYCGRG	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	478, 661
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	4 cut(s)	165, 184, 649, 717
FaiI	YATR	8 cut(s)	163, 182, 312, 382, 454, 633, 647, 715
FatI	CATG	4 cut(s)	161, 180, 645, 713
Fnu4HI	GCNGC	3 cut(s)	131, 191, 540
FokI	GGATG	2 cut(s)	248, 595
Fsp4HI	GCNGC	3 cut(s)	131, 191, 540
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	131, 191, 540
GsaI	CCCAGC	2 cut(s)	293, 451
GsuI	CTGGAG	5 cut(s)	204, 462, 603, 684, 707
HaeIII	GGCC	4 cut(s)	68, 197, 236, 636
HapII	CCGG	2 cut(s)	87, 194
HgaI	GACGC	2 cut(s)	213, 255
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	165, 184, 649, 717
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	413, 682
HpaII	CCGG	2 cut(s)	87, 194
HphI	GGTGA	2 cut(s)	3, 465
Hpy166II	GTNNAC	2 cut(s)	63, 367
Hpy188III	TCNNGA	6 cut(s)	153, 181, 269, 620, 686, 714
Hpy8I	GTNNAC	2 cut(s)	63, 367
HpyAV	CCTTC	4 cut(s)	290, 317, 321, 572
HpyCH4III	ACNGT	3 cut(s)	281, 358, 607
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	6 cut(s)	28, 34, 40, 46, 542, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 539, 642
HpyF3I	CTNAG	3 cut(s)	242, 342, 568
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	165, 184, 649, 717
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
KspI	CCGCGG	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	158, 350, 654, 703
LmnI	GCTCC	2 cut(s)	665, 688
Lsp1109I	GCAGC	3 cut(s)	142, 177, 526
LweI	GCATC	3 cut(s)	11, 14, 37
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	2 cut(s)	89, 571
MalI	GATC	4 cut(s)	160, 352, 656, 705
MboI	GATC	4 cut(s)	158, 350, 654, 703
MboII	GAAGA	3 cut(s)	168, 284, 451
MflI	RGATCY	2 cut(s)	654, 703
MnlI	CCTC	9 cut(s)	215, 226, 276, 486, 564, 587, 616, 627, 669
MroNI	GCCGGC	1 cut(s)	193
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	712
MspA1I	CMGCKG	3 cut(s)	230, 293, 398
MspI	CCGG	2 cut(s)	87, 194
MspR9I	CCNGG	3 cut(s)	87, 480, 663
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	480, 663
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	221, 539, 642
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	158, 350, 654, 703
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	4 cut(s)	165, 184, 649, 717
NlaIV	GGNNCC	2 cut(s)	333, 705
NspV	TTCGAA	1 cut(s)	372
PaeR7I	CTCGAG	1 cut(s)	555
PagI	TCATGA	2 cut(s)	180, 713
PctI	GAATGC	1 cut(s)	380
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	413, 682
PflMI	CCANNNNNTGG	1 cut(s)	626
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	3 cut(s)	132, 192, 541
Psp1406I	AACGTT	1 cut(s)	671
Psp6I	CCWGG	2 cut(s)	478, 661
PspFI	CCCAGC	2 cut(s)	289, 447
PspGI	CCWGG	2 cut(s)	478, 661
PspN4I	GGNNCC	2 cut(s)	333, 705
PspPI	GGNCC	3 cut(s)	196, 332, 635
PspXI	VCTCGAGB	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	3 cut(s)	341, 575, 626
PsuI	RGATCY	2 cut(s)	654, 703
PvuII	CAGCTG	2 cut(s)	293, 398
RsaI	GTAC	2 cut(s)	283, 566
RsaNI	GTAC	2 cut(s)	282, 565
RseI	CAYNNNNRTG	1 cut(s)	712
SacII	CCGCGG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	131, 191, 540
Sau3AI	GATC	4 cut(s)	158, 350, 654, 703
Sau96I	GGNCC	3 cut(s)	196, 332, 635
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	87, 480, 663
SfaNI	GCATC	3 cut(s)	11, 14, 37
SfcI	CTRYAG	2 cut(s)	32, 277
Sfr274I	CTCGAG	1 cut(s)	555
Sfr303I	CCGCGG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	372
SgrBI	CCGCGG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	712
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
SsiI	CCGC	3 cut(s)	228, 230, 531
SspI	AATATT	2 cut(s)	172, 308
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	85, 478, 661
TaaI	ACNGT	3 cut(s)	281, 358, 607
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	372, 556
TatI	WGTACW	2 cut(s)	281, 564
TfiI	GAWTC	2 cut(s)	413, 682
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	3 cut(s)	130, 190, 539
TspDTI	ATGAA	4 cut(s)	153, 599, 662, 702
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	555
XspI	CTAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.