Rh7DG300000

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009566
Physical Location & Seq
Forward (+)
34314934 .. 34386801
71868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG300000.1

Sequence Viewer

Length: 525 bp
ATGTTGCTAGCTCCGAAGATTGTGGGAAGGCATCGGTGGGATTTGTTAGTACTAGTTGAATTTAACCCATATTTCCTTTTTGCTATCTCAGCAGCTGATGGATTGAAATATTATGATTTGGTTGAGGGAAAGGGTCCAGTAGCTGAGAAAGGATCAACAGTTCAGGTTCACTTTGATTGCCTATATCGTGGGATTACCGCTGTATCAAGCAGGGAATCTAAAATCTTGGCTGGAAATCGTATTATTGCCCAGCCATACGTCTTCAAAGTTGGCGCTACTCCAGGGAAGGAACGAAAGCGAGAGTTTGTGGACAACGCAAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCACGAGCAATGTACTCGGTAACTGAAGGGATGAAAGTAGGGGGGAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGATATGGCCCAAAGGGCATGAATGAGATTCCTCCTGGAGCAACGTTTGAGCTAAATCTGGAGCTTTTGCAGCTGAATCCACCTTCAAGAGAGTGA

Protein Analysis

174

Amino Acids

19.03

Weight (kDa)

9.32

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 48 - 166 3.2e-11 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 428
AciI CCGC 1 cut(s) 198
AclI AACGTT 1 cut(s) 473
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 2 cut(s) 51, 368
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 4 cut(s) 59, 106, 265, 516
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 2 cut(s) 280, 463
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 7 cut(s) 11, 95, 143, 341, 481, 493, 502
AluI AGCT 7 cut(s) 11, 95, 143, 341, 481, 493, 502
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 3 cut(s) 95, 143, 428
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 3 cut(s) 92, 341, 499
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 134, 437
AsuNHI GCTAGC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 134
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BauI CACGAG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 3 cut(s) 104, 328, 511
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BciT130I CCWGG 2 cut(s) 282, 465
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 8, 53
BfoI RGCGCY 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 444
BisI GCNGC 3 cut(s) 93, 342, 500
BlsI GCNGC 3 cut(s) 94, 343, 501
BmcAI AGTACT 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 282, 465
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 134, 437
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 282, 465
BmsI GCATC 1 cut(s) 40
BmtI GCTAGC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 253
BpmI CTGGAG 4 cut(s) 264, 405, 486, 509
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 282, 465
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 102, 135
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 104, 328, 511
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 2 cut(s) 318, 327
BshFI GGCC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 428
BsnI GGCC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 2 cut(s) 101, 136
BspLI GGNNCC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 282, 465
Bst4CI ACNGT 2 cut(s) 160, 409
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 88, 144
BstF5I GGATG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 4 cut(s) 89, 341, 444, 499
BstNI CCWGG 2 cut(s) 282, 465
BstSCI CCNGG 2 cut(s) 280, 463
BstV1I GCAGC 3 cut(s) 104, 328, 511
BstV2I GAAGAC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 438
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 9
CaiI CAGNNNCTG 3 cut(s) 95, 143, 428
CfoI GCGC 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 134, 437
Csp6I GTAC 2 cut(s) 50, 367
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 50, 367
DdeI CTNAG 2 cut(s) 88, 144
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 280, 463
FaeI CATG 1 cut(s) 451
FaiI YATR 6 cut(s) 70, 114, 184, 256, 435, 449
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 93, 342, 500
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 93, 342, 500
FspBI CTAG 2 cut(s) 8, 53
GlaI GCGC 1 cut(s) 274
GluI GCNGC 3 cut(s) 93, 342, 500
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 4 cut(s) 264, 405, 486, 509
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 1 cut(s) 438
HhaI GCGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 3 cut(s) 215, 457, 505
Hpy166II GTNNAC 2 cut(s) 169, 310
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 3 cut(s) 422, 488, 516
Hpy8I GTNNAC 2 cut(s) 169, 310
HpyAV CCTTC 4 cut(s) 21, 280, 374, 522
HpyCH4III ACNGT 2 cut(s) 160, 409
HpyCH4IV ACGT 2 cut(s) 258, 473
HpyCH4V TGCA 3 cut(s) 335, 344, 499
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 341, 444, 499
HpyF3I CTNAG 2 cut(s) 88, 144
HpySE526I ACGT 2 cut(s) 258, 473
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 3 cut(s) 16, 467, 490
Lsp1109I GCAGC 3 cut(s) 104, 328, 511
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 8, 53
MaeII ACGT 2 cut(s) 258, 473
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 28, 253
MluCI AATT 1 cut(s) 59
MnlI CCTC 4 cut(s) 118, 418, 429, 471
MseI TTAA 1 cut(s) 63
MspA1I CMGCKG 3 cut(s) 95, 200, 502
MspR9I CCNGG 2 cut(s) 282, 465
MvaI CCWGG 2 cut(s) 282, 465
MwoI GCNNNNNNNGC 4 cut(s) 89, 341, 444, 499
NdeII GATC 1 cut(s) 152
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 215, 457, 505
PflMI CCANNNNNTGG 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 3 cut(s) 94, 343, 501
Psp1406I AACGTT 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 280, 463
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 2 cut(s) 280, 463
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 134, 437
PstNI CAGNNNCTG 3 cut(s) 95, 143, 428
PvuII CAGCTG 2 cut(s) 95, 502
RsaI GTAC 2 cut(s) 51, 368
RsaNI GTAC 2 cut(s) 50, 367
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 3 cut(s) 93, 342, 500
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 2 cut(s) 134, 437
ScaI AGTACT 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 282, 465
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 1 cut(s) 59
SsiI CCGC 1 cut(s) 198
SspI AATATT 1 cut(s) 110
SspMI CTAG 2 cut(s) 8, 53
StyD4I CCNGG 2 cut(s) 280, 463
TaaI ACNGT 2 cut(s) 160, 409
TaiI ACGT 2 cut(s) 261, 476
TasI AATT 1 cut(s) 59
TatI WGTACW 2 cut(s) 49, 366
TfiI GAWTC 3 cut(s) 215, 457, 505
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 3 cut(s) 92, 341, 499
TspDTI ATGAA 2 cut(s) 401, 464
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 59
XspI CTAG 2 cut(s) 8, 53
ZrmI AGTACT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.