Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015060.1

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Reverse (-)

92126 .. 94459

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015060.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcatcatcaataaggtgcttgcagttgcaccaccaaatccagttcaccgcttcaacttggaaacccagtaacactaggagaagccaagtccaagtagtcaaggcagagcagcaaaatgaagcagccatttcaagacgatcatgcgccaatattctcatcacttggctgccggctttgaccctcatttcggcgtctccgccgtcgtcggaggccagagagagacgcaacaggaaagtcatccctcttgaagactacagtactaccccagctgatggattgaaatattatgatttggttgagggaaagggtccagtagctgagaaaggatcaacagttcaggttcactttgattgcttatatcatgggattaccgctgtatcaagcagggaatctaaaatcttggctggaaatcgtattattgcccagccatacgtcttcaaagttggcgctactccagggaaggaacgaaagcgagagtttgtggacaacgcaaatggtctattttctgcacaagctgcaccaaaacccccacgagcaatgtactcggtaactgaagggatgaaagtaggggggaagcgaactgtgattgttcctccagaggctggatatggcccaaagggcatgaatgagattcctcctggagcaacgtttgagctaaatctggagcttttgcagctgaatccaccttcaagagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

233

Amino Acids

25.55

Weight (kDa)

9.56

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	275, 605
AciI	CCGC	3 cut(s)	51, 200, 375
AclI	AACGTT	1 cut(s)	650
AclWI	GGATC	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	262, 545
AfiI	CCNNNNNNNGG	3 cut(s)	190, 275, 605
AgsI	TTSAA	6 cut(s)	57, 135, 251, 283, 442, 693
AjnI	CCWGG	2 cut(s)	457, 640
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	6 cut(s)	272, 320, 518, 658, 670, 679
AluI	AGCT	6 cut(s)	272, 320, 518, 658, 670, 679
Alw26I	GTCTC	2 cut(s)	201, 217
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	2 cut(s)	320, 605
AoxI	GGCC	2 cut(s)	213, 613
ApeKI	GCWGC	5 cut(s)	112, 125, 169, 518, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	2 cut(s)	149, 452
AspS9I	GGNCC	2 cut(s)	311, 614
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BauI	CACGAG	1 cut(s)	534
BbsI	GAAGAC	2 cut(s)	258, 430
BbvI	GCAGC	5 cut(s)	124, 137, 156, 505, 688
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	2 cut(s)	459, 642
BcoDI	GTCTC	2 cut(s)	201, 217
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	621
BisI	GCNGC	5 cut(s)	113, 126, 170, 519, 677
BlsI	GCNGC	5 cut(s)	114, 127, 171, 520, 678
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	459, 642
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	311, 614
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	459, 642
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	2 cut(s)	258, 430
BpmI	CTGGAG	4 cut(s)	441, 582, 663, 686
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 275, 605
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	43, 69, 314
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	459, 642
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	2 cut(s)	240, 567
BseLI	CCNNNNNNNGG	3 cut(s)	190, 275, 605
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	43, 69, 314
BseXI	GCAGC	5 cut(s)	124, 137, 156, 505, 688
BseYI	CCCAGC	2 cut(s)	268, 426
BsgI	GTGCAG	2 cut(s)	495, 504
BshFI	GGCC	2 cut(s)	215, 615
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	190, 275, 605
BsmAI	GTCTC	2 cut(s)	201, 217
BsmBI	CGTCTC	2 cut(s)	201, 217
BsnI	GGCC	2 cut(s)	215, 615
Bsp143I	GATC	2 cut(s)	140, 329
BspACI	CCGC	3 cut(s)	51, 200, 375
BspANI	GGCC	2 cut(s)	215, 615
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	43, 69, 314
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	140, 329
BssNI	GRCGYC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	459, 642
Bst4CI	ACNGT	3 cut(s)	260, 337, 586
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	23, 174
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	240, 567
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	149, 452
BstKTI	GATC	2 cut(s)	143, 332
BstMAI	GTCTC	2 cut(s)	201, 217
BstMBI	GATC	2 cut(s)	140, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 621, 676
BstNI	CCWGG	2 cut(s)	459, 642
BstSCI	CCNGG	2 cut(s)	457, 640
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	5 cut(s)	124, 137, 156, 505, 688
BstV2I	GAAGAC	2 cut(s)	258, 430
BsuRI	GGCC	2 cut(s)	215, 615
BtsCI	GGATG	2 cut(s)	240, 567
Cac8I	GCNNGC	2 cut(s)	23, 174
CaiI	CAGNNNCTG	2 cut(s)	320, 605
CfoI	GCGC	2 cut(s)	149, 452
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	311, 614
CseI	GACGC	2 cut(s)	183, 234
Csp6I	GTAC	2 cut(s)	261, 544
CviAII	CATG	3 cut(s)	144, 365, 625
CviQI	GTAC	2 cut(s)	261, 544
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	142, 331
DpnII	GATC	2 cut(s)	140, 329
EciI	GGCGGA	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	457, 640
Esp3I	CGTCTC	2 cut(s)	201, 217
FaeI	CATG	3 cut(s)	147, 368, 628
FaiI	YATR	7 cut(s)	145, 291, 361, 366, 433, 612, 626
FatI	CATG	3 cut(s)	143, 364, 624
Fnu4HI	GCNGC	5 cut(s)	113, 126, 170, 519, 677
FokI	GGATG	2 cut(s)	227, 574
Fsp4HI	GCNGC	5 cut(s)	113, 126, 170, 519, 677
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	148, 451
GluI	GCNGC	5 cut(s)	113, 126, 170, 519, 677
GsaI	CCCAGC	2 cut(s)	272, 430
GsuI	CTGGAG	4 cut(s)	441, 582, 663, 686
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	215, 615
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	2 cut(s)	183, 234
HhaI	GCGC	2 cut(s)	149, 452
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	147, 368, 628
Hin6I	GCGC	2 cut(s)	147, 450
HinP1I	GCGC	2 cut(s)	147, 450
HinfI	GANTC	3 cut(s)	392, 634, 682
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	3 cut(s)	48, 346, 487
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	5 cut(s)	135, 248, 599, 665, 693
Hpy8I	GTNNAC	3 cut(s)	48, 346, 487
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	3 cut(s)	457, 551, 699
HpyCH4III	ACNGT	3 cut(s)	260, 337, 586
HpyCH4IV	ACGT	2 cut(s)	435, 650
HpyCH4V	TGCA	5 cut(s)	25, 31, 512, 521, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 621, 676
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	435, 650
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	147, 368, 628
HspAI	GCGC	2 cut(s)	147, 450
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	140, 329
LmnI	GCTCC	2 cut(s)	644, 667
Lsp1109I	GCAGC	5 cut(s)	124, 137, 156, 505, 688
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	2 cut(s)	435, 650
MaeIII	GTNAC	2 cut(s)	71, 550
MalI	GATC	2 cut(s)	142, 331
MboI	GATC	2 cut(s)	140, 329
MboII	GAAGA	2 cut(s)	263, 430
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	7 cut(s)	194, 205, 255, 295, 595, 606, 648
MroNI	GCCGGC	1 cut(s)	172
MspA1I	CMGCKG	3 cut(s)	272, 377, 679
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	459, 642
MvaI	CCWGG	2 cut(s)	459, 642
MwoI	GCNNNNNNNGC	3 cut(s)	518, 621, 676
NaeI	GCCGGC	1 cut(s)	174
NdeII	GATC	2 cut(s)	140, 329
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	147, 368, 628
NlaIV	GGNNCC	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	392, 634, 682
PflMI	CCANNNNNTGG	2 cut(s)	275, 605
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	5 cut(s)	114, 127, 171, 520, 678
Psp1406I	AACGTT	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	457, 640
PspFI	CCCAGC	2 cut(s)	268, 426
PspGI	CCWGG	2 cut(s)	457, 640
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	311, 614
PstNI	CAGNNNCTG	2 cut(s)	320, 605
PvuII	CAGCTG	2 cut(s)	272, 679
RsaI	GTAC	2 cut(s)	262, 545
RsaNI	GTAC	2 cut(s)	261, 544
SatI	GCNGC	5 cut(s)	113, 126, 170, 519, 677
Sau3AI	GATC	2 cut(s)	140, 329
Sau96I	GGNCC	2 cut(s)	311, 614
ScaI	AGTACT	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	459, 642
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	311
SsiI	CCGC	3 cut(s)	51, 200, 375
SspI	AATATT	2 cut(s)	154, 287
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	457, 640
TaaI	ACNGT	3 cut(s)	260, 337, 586
TaiI	ACGT	2 cut(s)	438, 653
TatI	WGTACW	2 cut(s)	260, 543
TfiI	GAWTC	3 cut(s)	392, 634, 682
TseI	GCWGC	5 cut(s)	112, 125, 169, 518, 676
TspDTI	ATGAA	3 cut(s)	135, 578, 641
Van91I	CCANNNNNTGG	2 cut(s)	275, 605
VpaK11BI	GGWCC	1 cut(s)	311
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.