RLG00000002579

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009566
Physical Location & Seq
Reverse (-)
36571775 .. 36574080
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002579

Sequence Viewer

Length: 705 bp
ATGGCATCATCAGTAAGGTGCTTGCAGTTGCACCACCAAATCCGGTTCACTGCTTCAACTTGGAAACCCAGTAACACTAGGAGAAGCCAAGTCCAATTAGTCAAGGCAGCTGAGCAGCAAAATGAAGCAGCCATTTCAAGAAGATCATGCGCCAATATTCTCATTACTTGGCTGCCGGCTTTGACCCTCATTTCGGCGTCTCCGCCGTCGTCGGAGGCCAGAGAGAGACGCAACAGGAAAGTCATCCCTCTTGAGGACTACAGTACTACCCCAGCTGATGGATTGAAATATTATGATTTGGTTGAGGGAAAGGGTCCAGTAGCTGAGAAAGGATCAACAGTTGAGGTTCACTTTGATTGCTTATATCATGGGATTACCGCTGTATCAAGCAGGGAATCTAAAATCTTGGCTGGAAATCGTATTATTGCCCAGCCATACGTCTTCAAAGTTGGTGCTACTCCAGGGAAGGAACGAAAGCGAGAGTTTGTGGACAATGCAAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCACGAGCAATGTACTCGGTAACTGAAGGGATGAAAGTAGGGGGGAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGATATGGCCCAAAGGGCATGAATGAGATTCCTCCTGGAGCAACGTTTGAGCTAAATCTGGAGCTTTTGCGGCTGAATCCACCTTCAAGAGAGTGA

Protein Analysis

235

Amino Acids

25.68

Weight (kDa)

9.65

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 108 - 226 6.9e-11 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 278, 608
AciI CCGC 3 cut(s) 203, 378, 679
AclI AACGTT 1 cut(s) 653
AclWI GGATC 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 197
AfaI GTAC 2 cut(s) 265, 548
AfiI CCNNNNNNNGG 4 cut(s) 193, 253, 278, 608
AgsI TTSAA 5 cut(s) 57, 138, 286, 445, 696
AjnI CCWGG 2 cut(s) 460, 643
AluBI AGCT 6 cut(s) 110, 275, 323, 521, 661, 673
AluI AGCT 6 cut(s) 110, 275, 323, 521, 661, 673
Alw26I GTCTC 2 cut(s) 204, 220
AlwI GGATC 1 cut(s) 340
AlwNI CAGNNNCTG 2 cut(s) 323, 608
AoxI GGCC 2 cut(s) 216, 616
ApeKI GCWGC 5 cut(s) 107, 115, 128, 172, 521
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 314, 617
AvaII GGWCC 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BauI CACGAG 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 5 cut(s) 119, 127, 140, 159, 508
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BciT130I CCWGG 2 cut(s) 462, 645
BcoDI GTCTC 2 cut(s) 204, 220
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 6 cut(s) 108, 116, 129, 173, 522, 680
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 6 cut(s) 109, 117, 130, 174, 523, 681
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 462, 645
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 314, 617
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 2 cut(s) 462, 645
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 433
BpmI CTGGAG 4 cut(s) 444, 585, 666, 689
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 253, 278, 608
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 2 cut(s) 69, 317
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 462, 645
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 2 cut(s) 243, 570
BseLI CCNNNNNNNGG 4 cut(s) 193, 253, 278, 608
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 102, 315
BseNI ACTGG 2 cut(s) 69, 317
BseXI GCAGC 5 cut(s) 119, 127, 140, 159, 508
BseYI CCCAGC 2 cut(s) 271, 429
BsgI GTGCAG 2 cut(s) 498, 507
BshFI GGCC 2 cut(s) 218, 618
BsiSI CCGG 2 cut(s) 43, 176
BslI CCNNNNNNNGG 4 cut(s) 193, 253, 278, 608
BsmAI GTCTC 2 cut(s) 204, 220
BsmBI CGTCTC 2 cut(s) 204, 220
BsnI GGCC 2 cut(s) 218, 618
Bsp143I GATC 2 cut(s) 143, 332
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 3 cut(s) 203, 378, 679
BspANI GGCC 2 cut(s) 218, 618
BspCNI CTCAG 2 cut(s) 103, 316
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 2 cut(s) 69, 317
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 2 cut(s) 143, 332
BssNI GRCGYC 1 cut(s) 197
BssSI CACGAG 1 cut(s) 537
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 462, 645
Bst4CI ACNGT 3 cut(s) 263, 340, 589
BstACI GRCGYC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 23, 177
BstDEI CTNAG 2 cut(s) 111, 324
BstF5I GGATG 2 cut(s) 243, 570
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 146, 335
BstMAI GTCTC 2 cut(s) 204, 220
BstMBI GATC 2 cut(s) 143, 332
BstMWI GCNNNNNNNGC 3 cut(s) 521, 624, 679
BstNI CCWGG 2 cut(s) 462, 645
BstSCI CCNGG 2 cut(s) 460, 643
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 5 cut(s) 119, 127, 140, 159, 508
BstV2I GAAGAC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 218, 618
BtsCI GGATG 2 cut(s) 243, 570
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 23, 177
CaiI CAGNNNCTG 2 cut(s) 323, 608
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 314, 617
CseI GACGC 2 cut(s) 186, 237
Csp6I GTAC 2 cut(s) 264, 547
CviAII CATG 3 cut(s) 147, 368, 628
CviQI GTAC 2 cut(s) 264, 547
DdeI CTNAG 2 cut(s) 111, 324
DpnI GATC 2 cut(s) 145, 334
DpnII GATC 2 cut(s) 143, 332
EciI GGCGGA 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 579
EcoRII CCWGG 2 cut(s) 460, 643
Esp3I CGTCTC 2 cut(s) 204, 220
FaeI CATG 3 cut(s) 150, 371, 631
FaiI YATR 7 cut(s) 148, 294, 364, 369, 436, 615, 629
FatI CATG 3 cut(s) 146, 367, 627
Fnu4HI GCNGC 6 cut(s) 108, 116, 129, 173, 522, 680
FokI GGATG 2 cut(s) 230, 577
Fsp4HI GCNGC 6 cut(s) 108, 116, 129, 173, 522, 680
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 108, 116, 129, 173, 522, 680
GsaI CCCAGC 2 cut(s) 275, 433
GsuI CTGGAG 4 cut(s) 444, 585, 666, 689
HaeIII GGCC 2 cut(s) 218, 618
HapII CCGG 2 cut(s) 43, 176
HgaI GACGC 2 cut(s) 186, 237
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 150, 371, 631
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 395, 637, 685
HpaII CCGG 2 cut(s) 43, 176
Hpy166II GTNNAC 3 cut(s) 48, 349, 490
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 5 cut(s) 138, 251, 602, 668, 696
Hpy8I GTNNAC 3 cut(s) 48, 349, 490
Hpy99I CGWCG 2 cut(s) 211, 214
HpyAV CCTTC 3 cut(s) 460, 554, 702
HpyCH4III ACNGT 3 cut(s) 263, 340, 589
HpyCH4IV ACGT 2 cut(s) 438, 653
HpyCH4V TGCA 5 cut(s) 25, 31, 497, 515, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 624, 679
HpyF3I CTNAG 2 cut(s) 111, 324
HpySE526I ACGT 2 cut(s) 438, 653
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 150, 371, 631
HspAI GCGC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 143, 332
LmnI GCTCC 2 cut(s) 647, 670
Lsp1109I GCAGC 5 cut(s) 119, 127, 140, 159, 508
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 78
MaeII ACGT 2 cut(s) 438, 653
MaeIII GTNAC 2 cut(s) 71, 553
MalI GATC 2 cut(s) 145, 334
MboI GATC 2 cut(s) 143, 332
MboII GAAGA 2 cut(s) 153, 433
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 9 cut(s) 197, 208, 247, 258, 298, 337, 598, 609, 651
MroNI GCCGGC 1 cut(s) 175
MspA1I CMGCKG 3 cut(s) 110, 275, 380
MspI CCGG 2 cut(s) 43, 176
MspR9I CCNGG 2 cut(s) 462, 645
MvaI CCWGG 2 cut(s) 462, 645
MwoI GCNNNNNNNGC 3 cut(s) 521, 624, 679
NaeI GCCGGC 1 cut(s) 177
NdeII GATC 2 cut(s) 143, 332
NgoMIV GCCGGC 1 cut(s) 175
NlaIII CATG 3 cut(s) 150, 371, 631
NlaIV GGNNCC 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 395, 637, 685
PflMI CCANNNNNTGG 2 cut(s) 278, 608
PfoI TCCNGGA 1 cut(s) 643
PkrI GCNGC 6 cut(s) 109, 117, 130, 174, 523, 681
Psp1406I AACGTT 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 460, 643
PspFI CCCAGC 2 cut(s) 271, 429
PspGI CCWGG 2 cut(s) 460, 643
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 2 cut(s) 314, 617
PstNI CAGNNNCTG 2 cut(s) 323, 608
PvuII CAGCTG 2 cut(s) 110, 275
RsaI GTAC 2 cut(s) 265, 548
RsaNI GTAC 2 cut(s) 264, 547
SatI GCNGC 6 cut(s) 108, 116, 129, 173, 522, 680
Sau3AI GATC 2 cut(s) 143, 332
Sau96I GGNCC 2 cut(s) 314, 617
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 462, 645
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 259
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 95
SsiI CCGC 3 cut(s) 203, 378, 679
SspI AATATT 2 cut(s) 157, 290
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 460, 643
TaaI ACNGT 3 cut(s) 263, 340, 589
TaiI ACGT 2 cut(s) 441, 656
TasI AATT 1 cut(s) 95
TatI WGTACW 2 cut(s) 263, 546
TauI GCSGC 1 cut(s) 682
TfiI GAWTC 3 cut(s) 395, 637, 685
TscAI CASTG 1 cut(s) 55
TseI GCWGC 5 cut(s) 107, 115, 128, 172, 521
TspDTI ATGAA 3 cut(s) 138, 581, 644
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 2 cut(s) 278, 608
VpaK11BI GGWCC 1 cut(s) 314
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.