Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Reverse (-)

494907 .. 499027

Gene Structure 4121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00530.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGATGACTTATTCTTTATGGGAGATAATCTTAGCTGTTGGAACAAAGCTGCAAGCAATTATAACACAAATGGCACTTGAAATCCAAGAAAGGCATGCTGTAGTCCAAGGAATACCTCTGGTGCAAGTCTCAGACGAGCATTTTTGGTTCGGCTGGCCTCAGTTAATTCTTCATCTGATCCATTTTGTCCTCTTTCAGAATGCATTTGAGATTACATATTTTTTCTGGATATGGGTAATAATCAAGCTAATCGCCTGTTTCTGTATTTTGTACGAGTTTGGGCTGAGATCTTGTTTCCATGATAATTTCGTTCTCACAGCACTTAGAGTTGCACTTGGGTACGTCGACCTTCTCTCTTTTTTCTTCCTCGTTGCTAATTCTACAGCGAGAATGGTAGCAGTTCAGTTTATGTGCAGCTACATCACACTTCCGCTATATGCATTGGTTACGCAGACGTTAAAATTACATTCGCAGATGGGATCAACAATGAAGAAGTCGATCTTTGATGAACAAACTAACAAGGCTTTAAAGATATGGCAAAAAAATGCTGCTGCAAAGAAGGCTGGTGGGAAGTCGGGAGGTAAAGCATCTTCGGGTGGCGACTCAGTAACAAAGCCACCACCAAAGGCTAAGATGGACAAAAACGCATCAACTCCTGAACAGACAGCAAACATCACGGCCAGCGTAGATATTCAAGGCAACAACACTGACCTCCTATCAGGACCGCATCCTGCTGCTATATTTCCAACGGCCATGGCATCAGTAAGGTGCTTGACCGTTAATCAGCGTCTCAGTCGTCATCATTCTCATTCAAAAGGTGGCGGCAGCAGTACTAAAGGGCAAGTAGAGCAAGTTTCAGTAGTACAAAAAGTGCTGCCCATTTCCTCGTCATTGATTTCTTGTTCAAGAAGATGTGCTGCCATTCTCATTAGTACTTGGCTGCCTATCACCCTCATTTCAGCAGCGTCTCCTCCTCCGCCTTCACTGGCGAGAGAGCGACGCAACAGGAAAATCATCCCCCTTGAAGACTACCGCACAACCCCAGCTGATGGATTAAAATATTATGATTTGGTTGAGGGAAGGGGTCCAGTAGCTGAGAAAGGATCAACAGTTGAGGTCCACTTTGACTGCTTGTATCGGGGGATTACAGCCGTGTCAAGCAGGGAATCTAAACTCTTGGCCGGAAATCGTAGTATCGCGCAGCCATACGTGTTCAAAGTTGGAGCTACTCCGGGGAAAGAACGAAAGCGTGAGTTTGTGGACAATGCCAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCTCAAGCAATGTACTCGGTAACCGAGGGGATGAAAGTCGGGGGAAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGCTACGGCCAAAGGGGCATGAATGAGATCCCTCCTGGTGCAACGTTTGAGCTAAATCTGGAGCTTTTGCAAGTAATTCAGCCAGACGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

492

Amino Acids

53.89

Weight (kDa)

9.43

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccB7I	CCANNNNNTGG	2 cut(s)	1049, 1379
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	1 cut(s)	1199
AciI	CCGC	5 cut(s)	431, 725, 822, 977, 1033
AclI	AACGTT	1 cut(s)	1424
AclWI	GGATC	4 cut(s)	172, 487, 1111, 1402
AcoI	YGGCCR	4 cut(s)	678, 750, 1179, 1387
AfaI	GTAC	6 cut(s)	272, 341, 832, 864, 934, 1319
AfiI	CCNNNNNNNGG	2 cut(s)	1049, 1379
AflIII	ACRYGT	1 cut(s)	1209
AgsI	TTSAA	6 cut(s)	80, 695, 813, 906, 1025, 1216
AjnI	CCWGG	1 cut(s)	1414
Alw26I	GTCTC	3 cut(s)	133, 794, 972
AlwI	GGATC	4 cut(s)	172, 487, 1111, 1402
AlwNI	CAGNNNCTG	2 cut(s)	1094, 1379
AoxI	GGCC	5 cut(s)	155, 678, 750, 1179, 1387
AspLEI	GCGC	1 cut(s)	1201
AspS9I	GGNCC	3 cut(s)	722, 1085, 1117
AsuC2I	CCSGG	1 cut(s)	1233
AsuHPI	GGTGA	1 cut(s)	940
AvaII	GGWCC	3 cut(s)	722, 1085, 1117
BarI	GAAGNNNNNNTAC	2 cut(s)	574, 606
BbsI	GAAGAC	1 cut(s)	1032
BccI	CCATC	3 cut(s)	469, 628, 1043
BceAI	ACGGC	4 cut(s)	693, 765, 1136, 1402
BcgI	CGANNNNNNTGC	2 cut(s)	1302, 1336
BciT130I	CCWGG	1 cut(s)	1416
BcnI	CCSGG	1 cut(s)	1233
BcoDI	GTCTC	3 cut(s)	133, 794, 972
BfmI	CTRYAG	2 cut(s)	99, 381
BglI	GCCNNNNNGGC	1 cut(s)	1395
BglII	AGATCT	1 cut(s)	287
BmcAI	AGTACT	2 cut(s)	832, 934
Bme1390I	CCNGG	2 cut(s)	1233, 1416
Bme18I	GGWCC	3 cut(s)	722, 1085, 1117
BmgT120I	GGNCC	3 cut(s)	722, 1085, 1117
BmiI	GGNNCC	1 cut(s)	1086
BmrFI	CCNGG	2 cut(s)	1233, 1416
BmsI	GCATC	4 cut(s)	596, 656, 736, 767
BpiI	GAAGAC	1 cut(s)	1032
BpmI	CTGGAG	2 cut(s)	1356, 1460
BpuEI	CTTGAG	1 cut(s)	1293
BpuMI	CCSGG	1 cut(s)	1233
BsaAI	YACGTR	1 cut(s)	1210
BsaJI	CCNNGG	4 cut(s)	106, 753, 1232, 1329
Bsc4I	CCNNNNNNNGG	2 cut(s)	1049, 1379
Bse1I	ACTGG	2 cut(s)	990, 1088
Bse3DI	GCAATG	1 cut(s)	1320
BseBI	CCWGG	1 cut(s)	1416
BseDI	CCNNGG	4 cut(s)	106, 753, 1232, 1329
BseGI	GGATG	3 cut(s)	727, 1014, 1341
BseLI	CCNNNNNNNGG	2 cut(s)	1049, 1379
BseMI	GCAATG	1 cut(s)	1320
BseMII	CTCAG	6 cut(s)	144, 173, 275, 618, 805, 1086
BseNI	ACTGG	2 cut(s)	990, 1088
BseRI	GAGGAG	2 cut(s)	960, 963
BseYI	CCCAGC	1 cut(s)	1042
BsgI	GTGCAG	3 cut(s)	433, 1269, 1278
Bsh1236I	CGCG	1 cut(s)	1199
BshFI	GGCC	5 cut(s)	157, 680, 752, 1181, 1389
BsiSI	CCGG	2 cut(s)	1182, 1232
BslI	CCNNNNNNNGG	2 cut(s)	1049, 1379
BsmAI	GTCTC	3 cut(s)	133, 794, 972
BsmBI	CGTCTC	2 cut(s)	794, 972
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	5 cut(s)	157, 680, 752, 1181, 1389
Bsp143I	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	5 cut(s)	431, 725, 822, 977, 1033
BspANI	GGCC	5 cut(s)	157, 680, 752, 1181, 1389
BspCNI	CTCAG	6 cut(s)	143, 172, 276, 617, 804, 1087
BspFNI	CGCG	1 cut(s)	1199
BspLI	GGNNCC	1 cut(s)	1086
BspPI	GGATC	4 cut(s)	172, 487, 1111, 1402
BsrDI	GCAATG	1 cut(s)	1320
BsrI	ACTGG	2 cut(s)	990, 1088
BssECI	CCNNGG	4 cut(s)	106, 753, 1232, 1329
BssMI	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
BssT1I	CCWWGG	2 cut(s)	106, 753
Bst2UI	CCWGG	1 cut(s)	1416
Bst4CI	ACNGT	3 cut(s)	778, 1111, 1360
BstAPI	GCANNNNNTGC	1 cut(s)	1292
BstBAI	YACGTR	1 cut(s)	1210
BstC8I	GCNNGC	5 cut(s)	54, 96, 155, 682, 1381
BstDEI	CTNAG	9 cut(s)	31, 130, 159, 284, 323, 604, 630, 791, 1095
BstDSI	CCRYGG	1 cut(s)	753
BstEII	GGTNACC	1 cut(s)	1324
BstF5I	GGATG	3 cut(s)	727, 1014, 1341
BstFNI	CGCG	1 cut(s)	1199
BstHHI	GCGC	1 cut(s)	1201
BstKTI	GATC	6 cut(s)	180, 290, 482, 501, 1106, 1410
BstMAI	GTCTC	3 cut(s)	133, 794, 972
BstMBI	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
BstMWI	GCNNNNNNNGC	4 cut(s)	560, 847, 1292, 1395
BstNI	CCWGG	1 cut(s)	1416
BstNSI	RCATGY	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	1324
BstSCI	CCNGG	2 cut(s)	1231, 1414
BstSFI	CTRYAG	2 cut(s)	99, 381
BstUI	CGCG	1 cut(s)	1199
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	287, 1407
BstYI	RGATCY	2 cut(s)	287, 1407
BsuRI	GGCC	5 cut(s)	157, 680, 752, 1181, 1389
BtgI	CCRYGG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	727, 1014, 1341
BtsIMutI	CAGTG	2 cut(s)	705, 983
Cac8I	GCNNGC	5 cut(s)	54, 96, 155, 682, 1381
CaiI	CAGNNNCTG	2 cut(s)	1094, 1379
CfoI	GCGC	1 cut(s)	1201
Cfr13I	GGNCC	3 cut(s)	722, 1085, 1117
CseI	GACGC	3 cut(s)	776, 954, 1008
Csp6I	GTAC	6 cut(s)	271, 340, 831, 863, 933, 1318
CviAII	CATG	4 cut(s)	95, 299, 754, 1399
CviQI	GTAC	6 cut(s)	271, 340, 831, 863, 933, 1318
DdeI	CTNAG	9 cut(s)	31, 130, 159, 284, 323, 604, 630, 791, 1095
DpnI	GATC	6 cut(s)	179, 289, 481, 500, 1105, 1409
DpnII	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
DraI	TTTAAA	1 cut(s)	528
EaeI	YGGCCR	4 cut(s)	678, 750, 1179, 1387
EciI	GGCGGA	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	106, 753
Eco47I	GGWCC	3 cut(s)	722, 1085, 1117
Eco91I	GGTNACC	1 cut(s)	1324
EcoO65I	GGTNACC	1 cut(s)	1324
EcoRII	CCWGG	1 cut(s)	1414
EcoT14I	CCWWGG	2 cut(s)	106, 753
EcoT22I	ATGCAT	2 cut(s)	205, 442
ErhI	CCWWGG	2 cut(s)	106, 753
Esp3I	CGTCTC	2 cut(s)	794, 972
FaeI	CATG	4 cut(s)	98, 302, 757, 1402
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	4 cut(s)	94, 298, 753, 1398
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	3 cut(s)	714, 1001, 1348
GlaI	GCGC	1 cut(s)	1200
GsaI	CCCAGC	1 cut(s)	1046
GsuI	CTGGAG	2 cut(s)	1356, 1460
HaeIII	GGCC	5 cut(s)	157, 680, 752, 1181, 1389
HapII	CCGG	2 cut(s)	1182, 1232
HgaI	GACGC	3 cut(s)	776, 954, 1008
HhaI	GCGC	1 cut(s)	1201
Hin1II	CATG	4 cut(s)	98, 302, 757, 1402
Hin6I	GCGC	1 cut(s)	1199
HinP1I	GCGC	1 cut(s)	1199
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	602, 1166
HpaII	CCGG	2 cut(s)	1182, 1232
HphI	GGTGA	1 cut(s)	940
Hpy166II	GTNNAC	3 cut(s)	346, 1120, 1261
Hpy188I	TCNGA	3 cut(s)	133, 177, 198
Hpy188III	TCNNGA	7 cut(s)	226, 576, 656, 720, 906, 1373, 1439
Hpy8I	GTNNAC	3 cut(s)	346, 1120, 1261
Hpy99I	CGWCG	2 cut(s)	347, 1002
HpyAV	CCTTC	4 cut(s)	359, 553, 990, 1074
HpyCH4III	ACNGT	3 cut(s)	778, 1111, 1360
HpyCH4IV	ACGT	4 cut(s)	342, 455, 1209, 1424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	560, 847, 1292, 1395
HpyF3I	CTNAG	9 cut(s)	31, 130, 159, 284, 323, 604, 630, 791, 1095
HpySE526I	ACGT	4 cut(s)	342, 455, 1209, 1424
Hsp92II	CATG	4 cut(s)	98, 302, 757, 1402
HspAI	GCGC	1 cut(s)	1199
Kzo9I	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
LmnI	GCTCC	2 cut(s)	1223, 1441
LweI	GCATC	4 cut(s)	596, 656, 736, 767
MaeII	ACGT	4 cut(s)	342, 455, 1209, 1424
MaeIII	GTNAC	3 cut(s)	445, 607, 1324
MalI	GATC	6 cut(s)	179, 289, 481, 500, 1105, 1409
MboI	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
MboII	GAAGA	6 cut(s)	161, 355, 502, 582, 921, 1037
MflI	RGATCY	2 cut(s)	287, 1407
MluCI	AATT	6 cut(s)	57, 165, 304, 376, 461, 1455
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	3 cut(s)	19, 770, 1201
Mph1103I	ATGCAT	2 cut(s)	205, 442
MseI	TTAA	5 cut(s)	164, 458, 527, 780, 1055
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	2 cut(s)	1182, 1232
MspR9I	CCNGG	2 cut(s)	1233, 1416
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	1416
MvnI	CGCG	1 cut(s)	1199
MwoI	GCNNNNNNNGC	4 cut(s)	560, 847, 1292, 1395
NciI	CCSGG	1 cut(s)	1233
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
NlaIII	CATG	4 cut(s)	98, 302, 757, 1402
NlaIV	GGNNCC	1 cut(s)	1086
NsiI	ATGCAT	2 cut(s)	205, 442
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	1166
PflMI	CCANNNNNTGG	2 cut(s)	1049, 1379
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	1210
PsiI	TTATAA	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	1424
Psp6I	CCWGG	1 cut(s)	1414
PspEI	GGTNACC	1 cut(s)	1324
PspFI	CCCAGC	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	1414
PspN4I	GGNNCC	1 cut(s)	1086
PspPI	GGNCC	3 cut(s)	722, 1085, 1117
PstNI	CAGNNNCTG	2 cut(s)	1094, 1379
PsuI	RGATCY	2 cut(s)	287, 1407
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	6 cut(s)	272, 341, 832, 864, 934, 1319
RsaNI	GTAC	6 cut(s)	271, 340, 831, 863, 933, 1318
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	5 cut(s)	164, 458, 527, 780, 1055
Sau3AI	GATC	6 cut(s)	177, 287, 479, 498, 1103, 1407
Sau96I	GGNCC	3 cut(s)	722, 1085, 1117
ScaI	AGTACT	2 cut(s)	832, 934
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	1233, 1416
SfaNI	GCATC	4 cut(s)	596, 656, 736, 767
SfcI	CTRYAG	2 cut(s)	99, 381
SinI	GGWCC	3 cut(s)	722, 1085, 1117
SmlI	CTYRAG	1 cut(s)	1308
SmoI	CTYRAG	1 cut(s)	1308
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	6 cut(s)	57, 165, 304, 376, 461, 1455
SsiI	CCGC	5 cut(s)	431, 725, 822, 977, 1033
SspI	AATATT	1 cut(s)	1061
StyD4I	CCNGG	2 cut(s)	1231, 1414
StyI	CCWWGG	2 cut(s)	106, 753
TaaI	ACNGT	3 cut(s)	778, 1111, 1360
TaiI	ACGT	4 cut(s)	345, 458, 1212, 1427
TaqI	TCGA	2 cut(s)	345, 497
TasI	AATT	6 cut(s)	57, 165, 304, 376, 461, 1455
TatI	WGTACW	4 cut(s)	830, 862, 932, 1317
TauI	GCSGC	1 cut(s)	825
TfiI	GAWTC	1 cut(s)	1166
Tru1I	TTAA	5 cut(s)	164, 458, 527, 780, 1055
Tru9I	TTAA	5 cut(s)	164, 458, 527, 780, 1055
TscAI	CASTG	2 cut(s)	712, 990
TspDTI	ATGAA	5 cut(s)	161, 503, 522, 1352, 1415
TspRI	CASTG	2 cut(s)	712, 990
Van91I	CCANNNNNTGG	2 cut(s)	1049, 1379
VpaK11BI	GGWCC	3 cut(s)	722, 1085, 1117
XceI	RCATGY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	345
ZrmI	AGTACT	2 cut(s)	832, 934
Zsp2I	ATGCAT	2 cut(s)	205, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.