Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009566

Physical Location & Seq

Genomic Coordinates Reverse (-)

607998 .. 609915

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1005700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCATCAGTAAGGTGCTTGACCGTTAATCAGCGTCTCAGTCGTCATCATTCTCATTCAAAAGGTGGCAGCGGCGGCAGCGGCAGCAGTACTAAAGGGCAAGTGGAACAAGTTTCAGTAGTACAAAAAGTGCTGCCCATTTCCTCGTCATTGATTTCTTGTTCAAGAAGATGTGCTGCCATTCTCATTAGTACTTGGCTGCCTATCACCCTCATTTCAGCCGCGTCTCCTCCTCCGCCTTCACTGGCGAGAGAGCGACGCAACAGGAAAATCATCCCCCTTGAAGACTACCGCACAACCCCTGATGGATTAAAATATTATGATTTGGTTGAGGGAAGGGGTCCCGTAGCTGAGAAAGGATCAACAGTTGAGGTCCACTTTGACTGCTTGTATCGGGGGATTACAGCCGTGTCAAGCAGGGAATCTAAACTCTTGGCCGGAAATCGTAGTATCGCGCAGCCATACGTGTTCAAAGTTGGAGCTACTCCGGGGAAAGAACGAAAGCGTGAGTTTGTGGACAATGCCAATGGTCTATTTTCTGCACAAGCTGCACCAAAACCCCCTCAAGCAATGTACTCCGTAACTGAGGGGATGAAAGTCGGGGGAAAGCGAACTGTGATTGTTCCTCCAGAGGCTGGCTACGGCCAAAGGGGCATGAATGAGATCCCTCCTGGTGCAACGTTTGAGCTAAATCTGGAGCTTTTGCAAGTAATTCCGCCTGACGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

244

Amino Acids

26.15

Weight (kDa)

9.75

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	117 - 235	1.7e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20810 AT1G20810
fragaria_vesca	FvH4_5g25880 FvH4_5g25880 FvH4_5g25880
malus_domestica	MD06G1005700.v1.1
prunus_persica	Prupe.5G007000_v2.0.a1 Prupe.5G007000_v2.0.a1
pyrus_communis	pycom06g00530
rosa_chinensis	RchiOBHm_Chr7g0216351
rosa_laevigata	RLG00000002579
rosa_multiflora	Rmu_sc0015060.1_g000018
rosa_roxburghii	Rroxscaffold_3G00243300
rosa_rugosa	Rorug07G0160000 Rorug07G0160100 Rorug07G0160100 Rorug07G0160100
rosa_samantha	Rh7AG297600 Rh7BG290000 Rh7CG317800 Rh7DG300000
rosa_wichuraiana	Rw7G025320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	2 cut(s)	224, 455
AciI	CCGC	7 cut(s)	72, 75, 81, 222, 236, 292, 716
AclI	AACGTT	1 cut(s)	680
AclWI	GGATC	2 cut(s)	367, 658
AcoI	YGGCCR	2 cut(s)	435, 643
AfaI	GTAC	4 cut(s)	91, 123, 193, 575
AfiI	CCNNNNNNNGG	2 cut(s)	635, 722
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	4 cut(s)	60, 165, 284, 472
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	5 cut(s)	350, 482, 548, 688, 700
AluI	AGCT	5 cut(s)	350, 482, 548, 688, 700
Alw26I	GTCTC	2 cut(s)	41, 231
AlwI	GGATC	2 cut(s)	367, 658
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	435, 643
ApeKI	GCWGC	8 cut(s)	69, 78, 84, 133, 176, 199, 457, 548
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	341, 373
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	2 cut(s)	341, 373
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	8 cut(s)	81, 90, 96, 120, 163, 186, 469, 535
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	392, 658
BciT130I	CCWGG	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	41, 231
BglI	GCCNNNNNGGC	1 cut(s)	651
BmcAI	AGTACT	2 cut(s)	91, 193
Bme1390I	CCNGG	2 cut(s)	489, 672
Bme18I	GGWCC	2 cut(s)	341, 373
BmgT120I	GGNCC	2 cut(s)	341, 373
BmiI	GGNNCC	2 cut(s)	342, 343
BmrFI	CCNGG	2 cut(s)	489, 672
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	612, 716
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 722
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	273, 597
BseLI	CCNNNNNNNGG	2 cut(s)	635, 722
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	52, 342, 576
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	219, 222
BseXI	GCAGC	8 cut(s)	81, 90, 96, 120, 163, 186, 469, 535
BsgI	GTGCAG	2 cut(s)	525, 534
Bsh1236I	CGCG	2 cut(s)	224, 455
BshFI	GGCC	2 cut(s)	437, 645
BsiSI	CCGG	2 cut(s)	438, 488
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	635, 722
BsmAI	GTCTC	2 cut(s)	41, 231
BsmBI	CGTCTC	2 cut(s)	41, 231
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	437, 645
Bsp143I	GATC	2 cut(s)	359, 663
BspACI	CCGC	7 cut(s)	72, 75, 81, 222, 236, 292, 716
BspANI	GGCC	2 cut(s)	437, 645
BspCNI	CTCAG	3 cut(s)	51, 343, 577
BspFNI	CGCG	2 cut(s)	224, 455
BspLI	GGNNCC	2 cut(s)	342, 343
BspPI	GGATC	2 cut(s)	367, 658
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	2 cut(s)	359, 663
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	25, 367, 616
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	637
BstDEI	CTNAG	3 cut(s)	38, 351, 585
BstF5I	GGATG	2 cut(s)	273, 597
BstFNI	CGCG	2 cut(s)	224, 455
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	362, 666
BstMAI	GTCTC	2 cut(s)	41, 231
BstMBI	GATC	2 cut(s)	359, 663
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 78, 81, 84, 548, 651
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	2 cut(s)	487, 670
BstUI	CGCG	2 cut(s)	224, 455
BstV1I	GCAGC	8 cut(s)	81, 90, 96, 120, 163, 186, 469, 535
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	437, 645
BtsCI	GGATG	2 cut(s)	273, 597
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	637
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	341, 373
CseI	GACGC	3 cut(s)	23, 213, 267
Csp6I	GTAC	4 cut(s)	90, 122, 192, 574
CviAII	CATG	1 cut(s)	655
CviQI	GTAC	4 cut(s)	90, 122, 192, 574
DdeI	CTNAG	3 cut(s)	38, 351, 585
DpnI	GATC	2 cut(s)	361, 665
DpnII	GATC	2 cut(s)	359, 663
EaeI	YGGCCR	2 cut(s)	435, 643
EciI	GGCGGA	2 cut(s)	225, 705
Eco47I	GGWCC	2 cut(s)	341, 373
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	670
Esp3I	CGTCTC	2 cut(s)	41, 231
FaeI	CATG	1 cut(s)	658
FaiI	YATR	3 cut(s)	321, 463, 656
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	1 cut(s)	654
FokI	GGATG	2 cut(s)	260, 604
GlaI	GCGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	612, 716
HaeIII	GGCC	2 cut(s)	437, 645
HapII	CCGG	2 cut(s)	438, 488
HgaI	GACGC	3 cut(s)	23, 213, 267
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	658
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	438, 488
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	376, 517
Hpy188III	TCNNGA	3 cut(s)	165, 629, 695
Hpy8I	GTNNAC	2 cut(s)	376, 517
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	249, 330
HpyCH4III	ACNGT	3 cut(s)	25, 367, 616
HpyCH4IV	ACGT	2 cut(s)	465, 680
HpyCH4V	TGCA	4 cut(s)	542, 551, 677, 706
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 78, 81, 84, 548, 651
HpyF3I	CTNAG	3 cut(s)	38, 351, 585
HpySE526I	ACGT	2 cut(s)	465, 680
Hsp92II	CATG	1 cut(s)	658
HspAI	GCGC	1 cut(s)	455
KflI	GGGWCCC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	359, 663
LmnI	GCTCC	2 cut(s)	479, 697
Lsp1109I	GCAGC	8 cut(s)	81, 90, 96, 120, 163, 186, 469, 535
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	2 cut(s)	465, 680
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	2 cut(s)	361, 665
MboI	GATC	2 cut(s)	359, 663
MboII	GAAGA	2 cut(s)	180, 296
MflI	RGATCY	1 cut(s)	663
MluCI	AATT	1 cut(s)	711
MmeI	TCCRAC	1 cut(s)	457
MseI	TTAA	2 cut(s)	27, 311
MspA1I	CMGCKG	2 cut(s)	72, 81
MspI	CCGG	2 cut(s)	438, 488
MspR9I	CCNGG	2 cut(s)	489, 672
MvaI	CCWGG	1 cut(s)	672
MvnI	CGCG	2 cut(s)	224, 455
MwoI	GCNNNNNNNGC	6 cut(s)	75, 78, 81, 84, 548, 651
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	2 cut(s)	359, 663
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	2 cut(s)	342, 343
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	635
Ppu21I	YACGTR	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	341
Psp1406I	AACGTT	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	342, 343
PspPI	GGNCC	2 cut(s)	341, 373
PspPPI	RGGWCCY	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	4 cut(s)	91, 123, 193, 575
RsaNI	GTAC	4 cut(s)	90, 122, 192, 574
SaqAI	TTAA	2 cut(s)	27, 311
Sau3AI	GATC	2 cut(s)	359, 663
Sau96I	GGNCC	2 cut(s)	341, 373
ScaI	AGTACT	2 cut(s)	91, 193
ScrFI	CCNGG	2 cut(s)	489, 672
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	2 cut(s)	341, 373
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	1 cut(s)	711
SsiI	CCGC	7 cut(s)	72, 75, 81, 222, 236, 292, 716
SspI	AATATT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	487, 670
TaaI	ACNGT	3 cut(s)	25, 367, 616
TaiI	ACGT	2 cut(s)	468, 683
TasI	AATT	1 cut(s)	711
TatI	WGTACW	4 cut(s)	89, 121, 191, 573
TauI	GCSGC	4 cut(s)	75, 78, 84, 224
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	27, 311
Tru9I	TTAA	2 cut(s)	27, 311
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	8 cut(s)	69, 78, 84, 133, 176, 199, 457, 548
TspDTI	ATGAA	2 cut(s)	608, 671
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	2 cut(s)	341, 373
ZrmI	AGTACT	2 cut(s)	91, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.