AT1G21380

Domain present in VPS-27, Hrs and STAM

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7485636 .. 7488780
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21380.1

Sequence Viewer

Length: 1521 bp
ATGGCGAATAATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATGCTTTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATTGTTGACCGAGATATTTTACCTGATATGGTCAAAATAGTGAAGAAGAAGCCAGACCTGACTGTGAGGGAGAAGATACTTAGTTTATTAGATACATGGCAAGAAGCTTTTGGTGGAAGCGGCGGAAGATTCCCTCAGTACTACAATGCCTATAATGAACTCAGGTCTGCTGGAATTGAATTCCCACCTCGAACCGAGAGCAGTGTACCGTTCTTTACTCCACCTCAGACTCAGCCTATTGTTGCTCAGGCAACTGCATCAGATGAAGATGCTGCTATTCAGGCCTCTCTGCAAAGTGATGATGCTTCTGCACTCAGCATGGAAGAGATTCAAAGCGCTCAGGGATCAGTTGATGTTTTGACAGACATGCTTGGGGCTCTTGATCCAAGTCATCCAGAGGGTTTGAAGGAAGAACTTATAGTTGACTTGGTCGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTGTGAATACTACTTCAGATGAGGAACTTATGTGTCAAGGGTTGGCACTGAATGACAATCTGCAGCGCGTTCTTCAGCACCATGATGATAAGGCAAAGGGAAACTCTGTTCCTGCAACAGCTCCCACTCCAATACCGCTTGTTAGCATCAATCATGATGACGATGATGATGAGTCAGATGATGATTTTTTACAGCTAGCTCATAGGTCGAAAAGAGAAAGTGCACGAGGGACTGGACAAGGGAATTTCAACCCTATTCTTCCTCCTCCACCATCTTCAATGAGGCCAGTACATGTTGATTCTGGTGCTATGGACTTCCTCAGTGGTGATGTCTACAAACCTCAAGAAACCTTCGAGAATGTAAAGCCTCCGAGTACATCCCAATCATCAAACCATGACTATTCTGCTCCTATTTTCGATGAACCAGTTCCTCAGAGCAAATCCCCTGAGCATGCTTTATTCACCAAACCAGTCTATGACCAAACTGAACAATTGCCTCCTGCTCCATGGGAGACTCAGGAGCCCCGGAAGTATCCACCCTCAATGTCTGCTAGAACCAACAAGAGGCCAGAATACTTCCAGCATAATGTTCCACAACACTCAAGCAGTGCCTCTGAATCTTCATACGATGATCTTTTGGGACAATCCCGGAATCTCTCTCTTAATCCAACAGCCTCTGCTGCTCCTGTTACTCCACCAAAGAAAGATGATAAACCAGAGGATATCCTTTTTAAAGACCTGATGGATTTTGCAAAAACCAGGACATCATCATCTTCTTCCTCCAAACCCAACAATCAGAACAACAAACCGTTTTGA

Protein Analysis

506

Amino Acids

55.79

Weight (kDa)

4.85

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 9 - 118 4.6e-28 VHS domain
GAT PF03127 193 - 265 2.2e-19 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 774
AciI CCGC 4 cut(s) 14, 357, 360, 842
AclWI GGATC 2 cut(s) 589, 614
AcsI RAATTY 3 cut(s) 160, 416, 949
AcuI CTGAAG 2 cut(s) 705, 764
AfaI GTAC 6 cut(s) 230, 377, 444, 682, 996, 1081
AfeI AGCGCT 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 1269
AflIII ACRYGT 2 cut(s) 694, 997
AgsI TTSAA 6 cut(s) 80, 416, 569, 643, 955, 984
AjiI CACGTC 1 cut(s) 695
AjnI CCWGG 1 cut(s) 1463
AloI GAACNNNNNNTCC 2 cut(s) 798, 830
AluBI AGCT 5 cut(s) 235, 344, 827, 901, 905
AluI AGCT 5 cut(s) 235, 344, 827, 901, 905
Alw21I GWGCWC 2 cut(s) 138, 931
Alw26I GTCTC 1 cut(s) 1211
Alw44I GTGCAC 1 cut(s) 927
AlwI GGATC 2 cut(s) 589, 614
AlwNI CAGNNNCTG 1 cut(s) 1382
Aor51HI AGCGCT 1 cut(s) 574
AoxI GGCC 3 cut(s) 519, 989, 1271
ApaLI GTGCAC 1 cut(s) 927
ApeKI GCWGC 4 cut(s) 17, 509, 769, 1385
ApoI RAATTY 3 cut(s) 160, 416, 949
Asp700I GAANNNNTTC 2 cut(s) 564, 1131
AspLEI GCGC 2 cut(s) 575, 774
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 2 cut(s) 1231, 1354
AsuHPI GGTGA 2 cut(s) 1043, 1159
AsuNHI GCTAGC 1 cut(s) 901
AvaII GGWCC 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 931
BanII GRGCYC 2 cut(s) 616, 1230
BauI CACGAG 1 cut(s) 930
Bbv12I GWGCWC 2 cut(s) 138, 931
BbvI GCAGC 4 cut(s) 4, 496, 781, 1372
BccI CCATC 2 cut(s) 985, 1441
BciT130I CCWGG 1 cut(s) 1465
BciVI GTATCC 1 cut(s) 1248
BcnI CCSGG 2 cut(s) 1231, 1354
BcoDI GTCTC 1 cut(s) 1211
BfaI CTAG 2 cut(s) 902, 1257
BfmI CTRYAG 1 cut(s) 767
BfoI RGCGCY 1 cut(s) 576
BfuI GTATCC 1 cut(s) 1248
BisI GCNGC 6 cut(s) 15, 18, 358, 510, 770, 1386
BlsI GCNGC 6 cut(s) 16, 19, 359, 511, 771, 1387
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 1231, 1354, 1465
Bme18I GGWCC 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 695
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 105, 1227
BmrFI CCNGG 3 cut(s) 1231, 1354, 1465
BmsI GCATC 4 cut(s) 496, 503, 529, 861
BmtI GCTAGC 1 cut(s) 905
Bpu10I CCTNAGC 3 cut(s) 483, 576, 1152
BpuEI CTTGAG 3 cut(s) 122, 1032, 1291
BpuMI CCSGG 2 cut(s) 1231, 1354
BsaJI CCNNGG 2 cut(s) 1211, 1229
Bsc4I CCNNNNNNNGG 1 cut(s) 1269
Bse1I ACTGG 4 cut(s) 943, 992, 1130, 1175
Bse3DI GCAATG 1 cut(s) 680
BseBI CCWGG 1 cut(s) 1465
BseDI CCNNGG 2 cut(s) 1211, 1229
BseGI GGATG 2 cut(s) 628, 1082
BseLI CCNNNNNNNGG 1 cut(s) 1269
BseMI GCAATG 1 cut(s) 680
BseNI ACTGG 4 cut(s) 943, 992, 1130, 1175
BseRI GAGGAG 1 cut(s) 960
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 4 cut(s) 4, 496, 781, 1372
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 774
BshFI GGCC 3 cut(s) 521, 991, 1273
BsiHKAI GWGCWC 2 cut(s) 138, 931
BsiSI CCGG 2 cut(s) 1231, 1354
BslFI GGGAC 2 cut(s) 949, 1359
BslI CCNNNNNNNGG 1 cut(s) 1269
BsmAI GTCTC 1 cut(s) 1211
BsmFI GGGAC 2 cut(s) 949, 1359
BsnI GGCC 3 cut(s) 521, 991, 1273
Bsp1286I GDGCHC 4 cut(s) 138, 616, 931, 1230
Bsp143I GATC 4 cut(s) 51, 581, 619, 1336
Bsp19I CCATGG 1 cut(s) 1211
BspACI CCGC 4 cut(s) 14, 357, 360, 842
BspANI GGCC 3 cut(s) 521, 991, 1273
BspFNI CGCG 1 cut(s) 774
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 2 cut(s) 105, 1227
BspMAI CTGCAG 1 cut(s) 771
BspOI GCTAGC 1 cut(s) 905
BspPI GGATC 2 cut(s) 589, 614
BsrDI GCAATG 1 cut(s) 680
BsrI ACTGG 4 cut(s) 943, 992, 1130, 1175
BssECI CCNNGG 2 cut(s) 1211, 1229
BssMI GATC 4 cut(s) 51, 581, 619, 1336
BssSI CACGAG 1 cut(s) 930
BssT1I CCWWGG 1 cut(s) 1211
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 1465
Bst4CI ACNGT 5 cut(s) 84, 147, 301, 447, 1515
Bst6I CTCTTC 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 903, 1158
BstDSI CCRYGG 1 cut(s) 1211
BstF5I GGATG 2 cut(s) 628, 1082
BstFNI CGCG 1 cut(s) 774
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 2 cut(s) 575, 774
BstKTI GATC 4 cut(s) 54, 584, 622, 1339
BstMAI GTCTC 1 cut(s) 1211
BstMBI GATC 4 cut(s) 51, 581, 619, 1336
BstMWI GCNNNNNNNGC 7 cut(s) 11, 23, 32, 122, 188, 518, 1385
BstNI CCWGG 1 cut(s) 1465
BstNSI RCATGY 3 cut(s) 607, 1001, 1160
BstSCI CCNGG 3 cut(s) 1229, 1352, 1463
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 4 cut(s) 4, 496, 781, 1372
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 3 cut(s) 521, 991, 1273
BtgI CCRYGG 1 cut(s) 1211
BtrI CACGTC 1 cut(s) 695
BtsCI GGATG 2 cut(s) 628, 1082
BtsI GCAGTG 3 cut(s) 132, 445, 1318
BtsIMutI CAGTG 5 cut(s) 132, 445, 752, 1033, 1318
Cac8I GCNNGC 2 cut(s) 903, 1158
CaiI CAGNNNCTG 1 cut(s) 1382
CciI TCATGA 1 cut(s) 859
CfoI GCGC 2 cut(s) 575, 774
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 6 cut(s) 229, 376, 443, 681, 995, 1080
CviQI GTAC 6 cut(s) 229, 376, 443, 681, 995, 1080
DpnI GATC 4 cut(s) 53, 583, 621, 1338
DpnII GATC 4 cut(s) 51, 581, 619, 1336
DraI TTTAAA 1 cut(s) 1438
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 1211
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 616, 1230
Eco32I GATATC 1 cut(s) 1429
Eco47I GGWCC 1 cut(s) 56
Eco47III AGCGCT 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 705, 764
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 1463
EcoRV GATATC 1 cut(s) 1429
EcoT14I CCWWGG 1 cut(s) 1211
EcoT38I GRGCYC 2 cut(s) 616, 1230
ErhI CCWWGG 1 cut(s) 1211
FaqI GGGAC 2 cut(s) 949, 1359
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 6 cut(s) 15, 18, 358, 510, 770, 1386
FokI GGATG 2 cut(s) 615, 1069
FriOI GRGCYC 2 cut(s) 616, 1230
Fsp4HI GCNGC 6 cut(s) 15, 18, 358, 510, 770, 1386
FspBI CTAG 2 cut(s) 902, 1257
GlaI GCGC 2 cut(s) 574, 773
GluI GCNGC 6 cut(s) 15, 18, 358, 510, 770, 1386
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 3 cut(s) 521, 991, 1273
HapII CCGG 2 cut(s) 1231, 1354
HhaI GCGC 2 cut(s) 575, 774
Hin6I GCGC 2 cut(s) 573, 772
HinP1I GCGC 2 cut(s) 573, 772
HincII GTYRAC 2 cut(s) 244, 661
HindII GTYRAC 2 cut(s) 244, 661
HindIII AAGCTT 1 cut(s) 342
HinfI GANTC 9 cut(s) 175, 366, 466, 565, 878, 1004, 1219, 1322, 1357
HpaII CCGG 2 cut(s) 1231, 1354
HphI GGTGA 2 cut(s) 1043, 1159
Hpy166II GTNNAC 6 cut(s) 229, 244, 443, 661, 929, 1039
Hpy188I TCNGA 8 cut(s) 465, 499, 724, 883, 1077, 1140, 1321, 1503
Hpy188III TCNNGA 9 cut(s) 59, 139, 172, 617, 632, 860, 1049, 1060, 1223
Hpy8I GTNNAC 6 cut(s) 229, 244, 443, 661, 929, 1039
HpyAV CCTTC 3 cut(s) 124, 637, 1066
HpyCH4III ACNGT 5 cut(s) 84, 147, 301, 447, 1515
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 7 cut(s) 494, 529, 548, 769, 821, 929, 1457
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 23, 32, 122, 188, 518, 1385
HpySE526I ACGT 1 cut(s) 694
HspAI GCGC 2 cut(s) 573, 772
Kzo9I GATC 4 cut(s) 51, 581, 619, 1336
LmnI GCTCC 5 cut(s) 832, 1117, 1213, 1225, 1393
Lsp1109I GCAGC 4 cut(s) 4, 496, 781, 1372
LweI GCATC 4 cut(s) 496, 503, 529, 861
MaeI CTAG 2 cut(s) 902, 1257
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 2 cut(s) 86, 1393
MalI GATC 4 cut(s) 53, 583, 621, 1338
MboI GATC 4 cut(s) 51, 581, 619, 1336
MfeI CAATTG 1 cut(s) 1196
MhlI GDGCHC 4 cut(s) 138, 616, 931, 1230
MluCI AATT 6 cut(s) 160, 211, 411, 416, 949, 1196
MlyI GAGTC 3 cut(s) 460, 887, 1213
MmeI TCCRAC 1 cut(s) 1397
MroXI GAANNNNTTC 2 cut(s) 564, 1131
MseI TTAA 2 cut(s) 1368, 1437
MslI CAYNNNNRTG 1 cut(s) 789
MspI CCGG 2 cut(s) 1231, 1354
MspR9I CCNGG 3 cut(s) 1231, 1354, 1465
MunI CAATTG 1 cut(s) 1196
MvaI CCWGG 1 cut(s) 1465
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 7 cut(s) 11, 23, 32, 122, 188, 518, 1385
NciI CCSGG 2 cut(s) 1231, 1354
NcoI CCATGG 1 cut(s) 1211
NdeII GATC 4 cut(s) 51, 581, 619, 1336
NheI GCTAGC 1 cut(s) 901
NlaIV GGNNCC 2 cut(s) 105, 1227
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 3 cut(s) 607, 1001, 1160
PaeI GCATGC 1 cut(s) 1160
PagI TCATGA 1 cut(s) 859
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 1 cut(s) 997
PdmI GAANNNNTTC 2 cut(s) 564, 1131
PfeI GAWTC 6 cut(s) 175, 366, 565, 1004, 1322, 1357
PflFI GACNNNGTC 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 1352
PkrI GCNGC 6 cut(s) 16, 19, 359, 511, 771, 1387
PleI GAGTC 3 cut(s) 460, 886, 1213
PpsI GAGTC 3 cut(s) 460, 886, 1213
PscI ACATGT 1 cut(s) 997
Psp6I CCWGG 1 cut(s) 1463
PspGI CCWGG 1 cut(s) 1463
PspN4I GGNNCC 2 cut(s) 105, 1227
PspPI GGNCC 1 cut(s) 56
PstI CTGCAG 1 cut(s) 771
PstNI CAGNNNCTG 1 cut(s) 1382
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 6 cut(s) 230, 377, 444, 682, 996, 1081
RsaNI GTAC 6 cut(s) 229, 376, 443, 681, 995, 1080
RseI CAYNNNNRTG 1 cut(s) 789
SaqAI TTAA 2 cut(s) 1368, 1437
SatI GCNGC 6 cut(s) 15, 18, 358, 510, 770, 1386
Sau3AI GATC 4 cut(s) 51, 581, 619, 1336
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 3 cut(s) 460, 887, 1213
ScrFI CCNGG 3 cut(s) 1231, 1354, 1465
SduI GDGCHC 4 cut(s) 138, 616, 931, 1230
SfaNI GCATC 4 cut(s) 496, 503, 529, 861
SfcI CTRYAG 1 cut(s) 767
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 3 cut(s) 137, 1047, 1306
SmoI CTYRAG 3 cut(s) 137, 1047, 1306
SphI GCATGC 1 cut(s) 1160
Sse9I AATT 6 cut(s) 160, 211, 411, 416, 949, 1196
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 4 cut(s) 14, 357, 360, 842
SspMI CTAG 2 cut(s) 902, 1257
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 3 cut(s) 1229, 1352, 1463
StyI CCWWGG 1 cut(s) 1211
TaaI ACNGT 5 cut(s) 84, 147, 301, 447, 1515
TaiI ACGT 1 cut(s) 697
TaqI TCGA 5 cut(s) 427, 669, 914, 1059, 1122
TaqII GACCGA 2 cut(s) 44, 261
TasI AATT 6 cut(s) 160, 211, 411, 416, 949, 1196
TatI WGTACW 3 cut(s) 375, 994, 1079
TauI GCSGC 2 cut(s) 17, 360
TfiI GAWTC 6 cut(s) 175, 366, 565, 1004, 1322, 1357
Tru1I TTAA 2 cut(s) 1368, 1437
Tru9I TTAA 2 cut(s) 1368, 1437
TscAI CASTG 5 cut(s) 132, 445, 759, 1033, 1318
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 4 cut(s) 17, 509, 769, 1385
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 408, 516, 1140, 1317
TspRI CASTG 5 cut(s) 132, 445, 759, 1033, 1318
Tth111I GACNNNGTC 1 cut(s) 665
VneI GTGCAC 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 3 cut(s) 160, 416, 949
XceI RCATGY 3 cut(s) 607, 1001, 1160
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 2 cut(s) 564, 1131
XspI CTAG 2 cut(s) 902, 1257
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.