Domain present in VPS-27, Hrs and STAM
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21380 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 |
| fragaria_vesca | FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 |
| malus_domestica | MD05G1008800.v1.1 MD10G1007100.v1.1 MD10G1007700.v1.1 |
| prunus_persica | Prupe.8G010900_v2.0.a1 Prupe.8G010900_v2.0.a1 |
| pyrus_communis | pycom05g00450 pycom10g00480 |
| rosa_chinensis | RchiOBHm_Chr6g0278141 |
| rosa_laevigata | RLG00000013238 |
| rosa_multiflora | Rmu_co8265659.1_g000001 Rmu_sc0000791.1_g000057 Rmu_sc0000857.1_g000058 |
| rosa_roxburghii | Rroxscaffold_7G00190500 |
| rosa_rugosa | Rorug06G0114900 |
| rosa_samantha | Rh6AG224900 Rh6BG229000 Rh6CG231500 Rh6DG222300 |
| rosa_wichuraiana | Rw6G019660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1038 |
| AccII | CGCG | 1 cut(s) | 774 |
| AciI | CCGC | 4 cut(s) | 14, 357, 360, 842 |
| AclWI | GGATC | 2 cut(s) | 589, 614 |
| AcsI | RAATTY | 3 cut(s) | 160, 416, 949 |
| AcuI | CTGAAG | 2 cut(s) | 705, 764 |
| AfaI | GTAC | 6 cut(s) | 230, 377, 444, 682, 996, 1081 |
| AfeI | AGCGCT | 1 cut(s) | 574 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1269 |
| AflIII | ACRYGT | 2 cut(s) | 694, 997 |
| AgsI | TTSAA | 6 cut(s) | 80, 416, 569, 643, 955, 984 |
| AjiI | CACGTC | 1 cut(s) | 695 |
| AjnI | CCWGG | 1 cut(s) | 1463 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 798, 830 |
| AluBI | AGCT | 5 cut(s) | 235, 344, 827, 901, 905 |
| AluI | AGCT | 5 cut(s) | 235, 344, 827, 901, 905 |
| Alw21I | GWGCWC | 2 cut(s) | 138, 931 |
| Alw26I | GTCTC | 1 cut(s) | 1211 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 2 cut(s) | 589, 614 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1382 |
| Aor51HI | AGCGCT | 1 cut(s) | 574 |
| AoxI | GGCC | 3 cut(s) | 519, 989, 1271 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApeKI | GCWGC | 4 cut(s) | 17, 509, 769, 1385 |
| ApoI | RAATTY | 3 cut(s) | 160, 416, 949 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 564, 1131 |
| AspLEI | GCGC | 2 cut(s) | 575, 774 |
| AspS9I | GGNCC | 1 cut(s) | 56 |
| AsuC2I | CCSGG | 2 cut(s) | 1231, 1354 |
| AsuHPI | GGTGA | 2 cut(s) | 1043, 1159 |
| AsuNHI | GCTAGC | 1 cut(s) | 901 |
| AvaII | GGWCC | 1 cut(s) | 56 |
| BaeGI | GKGCMC | 1 cut(s) | 931 |
| BanII | GRGCYC | 2 cut(s) | 616, 1230 |
| BauI | CACGAG | 1 cut(s) | 930 |
| Bbv12I | GWGCWC | 2 cut(s) | 138, 931 |
| BbvI | GCAGC | 4 cut(s) | 4, 496, 781, 1372 |
| BccI | CCATC | 2 cut(s) | 985, 1441 |
| BciT130I | CCWGG | 1 cut(s) | 1465 |
| BciVI | GTATCC | 1 cut(s) | 1248 |
| BcnI | CCSGG | 2 cut(s) | 1231, 1354 |
| BcoDI | GTCTC | 1 cut(s) | 1211 |
| BfaI | CTAG | 2 cut(s) | 902, 1257 |
| BfmI | CTRYAG | 1 cut(s) | 767 |
| BfoI | RGCGCY | 1 cut(s) | 576 |
| BfuI | GTATCC | 1 cut(s) | 1248 |
| BisI | GCNGC | 6 cut(s) | 15, 18, 358, 510, 770, 1386 |
| BlsI | GCNGC | 6 cut(s) | 16, 19, 359, 511, 771, 1387 |
| BmcAI | AGTACT | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 3 cut(s) | 1231, 1354, 1465 |
| Bme18I | GGWCC | 1 cut(s) | 56 |
| BmgBI | CACGTC | 1 cut(s) | 695 |
| BmgT120I | GGNCC | 1 cut(s) | 56 |
| BmiI | GGNNCC | 2 cut(s) | 105, 1227 |
| BmrFI | CCNGG | 3 cut(s) | 1231, 1354, 1465 |
| BmsI | GCATC | 4 cut(s) | 496, 503, 529, 861 |
| BmtI | GCTAGC | 1 cut(s) | 905 |
| Bpu10I | CCTNAGC | 3 cut(s) | 483, 576, 1152 |
| BpuEI | CTTGAG | 3 cut(s) | 122, 1032, 1291 |
| BpuMI | CCSGG | 2 cut(s) | 1231, 1354 |
| BsaJI | CCNNGG | 2 cut(s) | 1211, 1229 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1269 |
| Bse1I | ACTGG | 4 cut(s) | 943, 992, 1130, 1175 |
| Bse3DI | GCAATG | 1 cut(s) | 680 |
| BseBI | CCWGG | 1 cut(s) | 1465 |
| BseDI | CCNNGG | 2 cut(s) | 1211, 1229 |
| BseGI | GGATG | 2 cut(s) | 628, 1082 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1269 |
| BseMI | GCAATG | 1 cut(s) | 680 |
| BseNI | ACTGG | 4 cut(s) | 943, 992, 1130, 1175 |
| BseRI | GAGGAG | 1 cut(s) | 960 |
| BseSI | GKGCMC | 1 cut(s) | 931 |
| BseXI | GCAGC | 4 cut(s) | 4, 496, 781, 1372 |
| BsgI | GTGCAG | 1 cut(s) | 531 |
| Bsh1236I | CGCG | 1 cut(s) | 774 |
| BshFI | GGCC | 3 cut(s) | 521, 991, 1273 |
| BsiHKAI | GWGCWC | 2 cut(s) | 138, 931 |
| BsiSI | CCGG | 2 cut(s) | 1231, 1354 |
| BslFI | GGGAC | 2 cut(s) | 949, 1359 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1269 |
| BsmAI | GTCTC | 1 cut(s) | 1211 |
| BsmFI | GGGAC | 2 cut(s) | 949, 1359 |
| BsnI | GGCC | 3 cut(s) | 521, 991, 1273 |
| Bsp1286I | GDGCHC | 4 cut(s) | 138, 616, 931, 1230 |
| Bsp143I | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| Bsp19I | CCATGG | 1 cut(s) | 1211 |
| BspACI | CCGC | 4 cut(s) | 14, 357, 360, 842 |
| BspANI | GGCC | 3 cut(s) | 521, 991, 1273 |
| BspFNI | CGCG | 1 cut(s) | 774 |
| BspHI | TCATGA | 1 cut(s) | 859 |
| BspLI | GGNNCC | 2 cut(s) | 105, 1227 |
| BspMAI | CTGCAG | 1 cut(s) | 771 |
| BspOI | GCTAGC | 1 cut(s) | 905 |
| BspPI | GGATC | 2 cut(s) | 589, 614 |
| BsrDI | GCAATG | 1 cut(s) | 680 |
| BsrI | ACTGG | 4 cut(s) | 943, 992, 1130, 1175 |
| BssECI | CCNNGG | 2 cut(s) | 1211, 1229 |
| BssMI | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| BssSI | CACGAG | 1 cut(s) | 930 |
| BssT1I | CCWWGG | 1 cut(s) | 1211 |
| Bst2BI | CACGAG | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 1 cut(s) | 1465 |
| Bst4CI | ACNGT | 5 cut(s) | 84, 147, 301, 447, 1515 |
| Bst6I | CTCTTC | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 2 cut(s) | 903, 1158 |
| BstDSI | CCRYGG | 1 cut(s) | 1211 |
| BstF5I | GGATG | 2 cut(s) | 628, 1082 |
| BstFNI | CGCG | 1 cut(s) | 774 |
| BstH2I | RGCGCY | 1 cut(s) | 576 |
| BstHHI | GCGC | 2 cut(s) | 575, 774 |
| BstKTI | GATC | 4 cut(s) | 54, 584, 622, 1339 |
| BstMAI | GTCTC | 1 cut(s) | 1211 |
| BstMBI | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 11, 23, 32, 122, 188, 518, 1385 |
| BstNI | CCWGG | 1 cut(s) | 1465 |
| BstNSI | RCATGY | 3 cut(s) | 607, 1001, 1160 |
| BstSCI | CCNGG | 3 cut(s) | 1229, 1352, 1463 |
| BstSFI | CTRYAG | 1 cut(s) | 767 |
| BstSLI | GKGCMC | 1 cut(s) | 931 |
| BstUI | CGCG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 4 cut(s) | 4, 496, 781, 1372 |
| BsuI | GTATCC | 1 cut(s) | 1248 |
| BsuRI | GGCC | 3 cut(s) | 521, 991, 1273 |
| BtgI | CCRYGG | 1 cut(s) | 1211 |
| BtrI | CACGTC | 1 cut(s) | 695 |
| BtsCI | GGATG | 2 cut(s) | 628, 1082 |
| BtsI | GCAGTG | 3 cut(s) | 132, 445, 1318 |
| BtsIMutI | CAGTG | 5 cut(s) | 132, 445, 752, 1033, 1318 |
| Cac8I | GCNNGC | 2 cut(s) | 903, 1158 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1382 |
| CciI | TCATGA | 1 cut(s) | 859 |
| CfoI | GCGC | 2 cut(s) | 575, 774 |
| Cfr13I | GGNCC | 1 cut(s) | 56 |
| Csp6I | GTAC | 6 cut(s) | 229, 376, 443, 681, 995, 1080 |
| CviQI | GTAC | 6 cut(s) | 229, 376, 443, 681, 995, 1080 |
| DpnI | GATC | 4 cut(s) | 53, 583, 621, 1338 |
| DpnII | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| DraI | TTTAAA | 1 cut(s) | 1438 |
| Eam1104I | CTCTTC | 1 cut(s) | 555 |
| EarI | CTCTTC | 1 cut(s) | 555 |
| EciI | GGCGGA | 1 cut(s) | 375 |
| Eco130I | CCWWGG | 1 cut(s) | 1211 |
| Eco147I | AGGCCT | 1 cut(s) | 521 |
| Eco24I | GRGCYC | 2 cut(s) | 616, 1230 |
| Eco32I | GATATC | 1 cut(s) | 1429 |
| Eco47I | GGWCC | 1 cut(s) | 56 |
| Eco47III | AGCGCT | 1 cut(s) | 574 |
| Eco57I | CTGAAG | 2 cut(s) | 705, 764 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| EcoRII | CCWGG | 1 cut(s) | 1463 |
| EcoRV | GATATC | 1 cut(s) | 1429 |
| EcoT14I | CCWWGG | 1 cut(s) | 1211 |
| EcoT38I | GRGCYC | 2 cut(s) | 616, 1230 |
| ErhI | CCWWGG | 1 cut(s) | 1211 |
| FaqI | GGGAC | 2 cut(s) | 949, 1359 |
| FblI | GTMKAC | 1 cut(s) | 1038 |
| Fnu4HI | GCNGC | 6 cut(s) | 15, 18, 358, 510, 770, 1386 |
| FokI | GGATG | 2 cut(s) | 615, 1069 |
| FriOI | GRGCYC | 2 cut(s) | 616, 1230 |
| Fsp4HI | GCNGC | 6 cut(s) | 15, 18, 358, 510, 770, 1386 |
| FspBI | CTAG | 2 cut(s) | 902, 1257 |
| GlaI | GCGC | 2 cut(s) | 574, 773 |
| GluI | GCNGC | 6 cut(s) | 15, 18, 358, 510, 770, 1386 |
| HaeII | RGCGCY | 1 cut(s) | 576 |
| HaeIII | GGCC | 3 cut(s) | 521, 991, 1273 |
| HapII | CCGG | 2 cut(s) | 1231, 1354 |
| HhaI | GCGC | 2 cut(s) | 575, 774 |
| Hin6I | GCGC | 2 cut(s) | 573, 772 |
| HinP1I | GCGC | 2 cut(s) | 573, 772 |
| HincII | GTYRAC | 2 cut(s) | 244, 661 |
| HindII | GTYRAC | 2 cut(s) | 244, 661 |
| HindIII | AAGCTT | 1 cut(s) | 342 |
| HinfI | GANTC | 9 cut(s) | 175, 366, 466, 565, 878, 1004, 1219, 1322, 1357 |
| HpaII | CCGG | 2 cut(s) | 1231, 1354 |
| HphI | GGTGA | 2 cut(s) | 1043, 1159 |
| Hpy166II | GTNNAC | 6 cut(s) | 229, 244, 443, 661, 929, 1039 |
| Hpy188I | TCNGA | 8 cut(s) | 465, 499, 724, 883, 1077, 1140, 1321, 1503 |
| Hpy188III | TCNNGA | 9 cut(s) | 59, 139, 172, 617, 632, 860, 1049, 1060, 1223 |
| Hpy8I | GTNNAC | 6 cut(s) | 229, 244, 443, 661, 929, 1039 |
| HpyAV | CCTTC | 3 cut(s) | 124, 637, 1066 |
| HpyCH4III | ACNGT | 5 cut(s) | 84, 147, 301, 447, 1515 |
| HpyCH4IV | ACGT | 1 cut(s) | 694 |
| HpyCH4V | TGCA | 7 cut(s) | 494, 529, 548, 769, 821, 929, 1457 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 11, 23, 32, 122, 188, 518, 1385 |
| HpySE526I | ACGT | 1 cut(s) | 694 |
| HspAI | GCGC | 2 cut(s) | 573, 772 |
| Kzo9I | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| LmnI | GCTCC | 5 cut(s) | 832, 1117, 1213, 1225, 1393 |
| Lsp1109I | GCAGC | 4 cut(s) | 4, 496, 781, 1372 |
| LweI | GCATC | 4 cut(s) | 496, 503, 529, 861 |
| MaeI | CTAG | 2 cut(s) | 902, 1257 |
| MaeII | ACGT | 1 cut(s) | 694 |
| MaeIII | GTNAC | 2 cut(s) | 86, 1393 |
| MalI | GATC | 4 cut(s) | 53, 583, 621, 1338 |
| MboI | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| MfeI | CAATTG | 1 cut(s) | 1196 |
| MhlI | GDGCHC | 4 cut(s) | 138, 616, 931, 1230 |
| MluCI | AATT | 6 cut(s) | 160, 211, 411, 416, 949, 1196 |
| MlyI | GAGTC | 3 cut(s) | 460, 887, 1213 |
| MmeI | TCCRAC | 1 cut(s) | 1397 |
| MroXI | GAANNNNTTC | 2 cut(s) | 564, 1131 |
| MseI | TTAA | 2 cut(s) | 1368, 1437 |
| MslI | CAYNNNNRTG | 1 cut(s) | 789 |
| MspI | CCGG | 2 cut(s) | 1231, 1354 |
| MspR9I | CCNGG | 3 cut(s) | 1231, 1354, 1465 |
| MunI | CAATTG | 1 cut(s) | 1196 |
| MvaI | CCWGG | 1 cut(s) | 1465 |
| MvnI | CGCG | 1 cut(s) | 774 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 11, 23, 32, 122, 188, 518, 1385 |
| NciI | CCSGG | 2 cut(s) | 1231, 1354 |
| NcoI | CCATGG | 1 cut(s) | 1211 |
| NdeII | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| NheI | GCTAGC | 1 cut(s) | 901 |
| NlaIV | GGNNCC | 2 cut(s) | 105, 1227 |
| NmuCI | GTSAC | 1 cut(s) | 86 |
| NspI | RCATGY | 3 cut(s) | 607, 1001, 1160 |
| PaeI | GCATGC | 1 cut(s) | 1160 |
| PagI | TCATGA | 1 cut(s) | 859 |
| PceI | AGGCCT | 1 cut(s) | 521 |
| PciI | ACATGT | 1 cut(s) | 997 |
| PdmI | GAANNNNTTC | 2 cut(s) | 564, 1131 |
| PfeI | GAWTC | 6 cut(s) | 175, 366, 565, 1004, 1322, 1357 |
| PflFI | GACNNNGTC | 1 cut(s) | 665 |
| PfoI | TCCNGGA | 1 cut(s) | 1352 |
| PkrI | GCNGC | 6 cut(s) | 16, 19, 359, 511, 771, 1387 |
| PleI | GAGTC | 3 cut(s) | 460, 886, 1213 |
| PpsI | GAGTC | 3 cut(s) | 460, 886, 1213 |
| PscI | ACATGT | 1 cut(s) | 997 |
| Psp6I | CCWGG | 1 cut(s) | 1463 |
| PspGI | CCWGG | 1 cut(s) | 1463 |
| PspN4I | GGNNCC | 2 cut(s) | 105, 1227 |
| PspPI | GGNCC | 1 cut(s) | 56 |
| PstI | CTGCAG | 1 cut(s) | 771 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1382 |
| PsyI | GACNNNGTC | 1 cut(s) | 665 |
| RsaI | GTAC | 6 cut(s) | 230, 377, 444, 682, 996, 1081 |
| RsaNI | GTAC | 6 cut(s) | 229, 376, 443, 681, 995, 1080 |
| RseI | CAYNNNNRTG | 1 cut(s) | 789 |
| SaqAI | TTAA | 2 cut(s) | 1368, 1437 |
| SatI | GCNGC | 6 cut(s) | 15, 18, 358, 510, 770, 1386 |
| Sau3AI | GATC | 4 cut(s) | 51, 581, 619, 1336 |
| Sau96I | GGNCC | 1 cut(s) | 56 |
| ScaI | AGTACT | 1 cut(s) | 377 |
| SchI | GAGTC | 3 cut(s) | 460, 887, 1213 |
| ScrFI | CCNGG | 3 cut(s) | 1231, 1354, 1465 |
| SduI | GDGCHC | 4 cut(s) | 138, 616, 931, 1230 |
| SfaNI | GCATC | 4 cut(s) | 496, 503, 529, 861 |
| SfcI | CTRYAG | 1 cut(s) | 767 |
| SinI | GGWCC | 1 cut(s) | 56 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 789 |
| SmlI | CTYRAG | 3 cut(s) | 137, 1047, 1306 |
| SmoI | CTYRAG | 3 cut(s) | 137, 1047, 1306 |
| SphI | GCATGC | 1 cut(s) | 1160 |
| Sse9I | AATT | 6 cut(s) | 160, 211, 411, 416, 949, 1196 |
| SseBI | AGGCCT | 1 cut(s) | 521 |
| SsiI | CCGC | 4 cut(s) | 14, 357, 360, 842 |
| SspMI | CTAG | 2 cut(s) | 902, 1257 |
| StuI | AGGCCT | 1 cut(s) | 521 |
| StyD4I | CCNGG | 3 cut(s) | 1229, 1352, 1463 |
| StyI | CCWWGG | 1 cut(s) | 1211 |
| TaaI | ACNGT | 5 cut(s) | 84, 147, 301, 447, 1515 |
| TaiI | ACGT | 1 cut(s) | 697 |
| TaqI | TCGA | 5 cut(s) | 427, 669, 914, 1059, 1122 |
| TaqII | GACCGA | 2 cut(s) | 44, 261 |
| TasI | AATT | 6 cut(s) | 160, 211, 411, 416, 949, 1196 |
| TatI | WGTACW | 3 cut(s) | 375, 994, 1079 |
| TauI | GCSGC | 2 cut(s) | 17, 360 |
| TfiI | GAWTC | 6 cut(s) | 175, 366, 565, 1004, 1322, 1357 |
| Tru1I | TTAA | 2 cut(s) | 1368, 1437 |
| Tru9I | TTAA | 2 cut(s) | 1368, 1437 |
| TscAI | CASTG | 5 cut(s) | 132, 445, 759, 1033, 1318 |
| TseFI | GTSAC | 1 cut(s) | 86 |
| TseI | GCWGC | 4 cut(s) | 17, 509, 769, 1385 |
| Tsp45I | GTSAC | 1 cut(s) | 86 |
| TspDTI | ATGAA | 4 cut(s) | 408, 516, 1140, 1317 |
| TspRI | CASTG | 5 cut(s) | 132, 445, 759, 1033, 1318 |
| Tth111I | GACNNNGTC | 1 cut(s) | 665 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 1 cut(s) | 56 |
| XapI | RAATTY | 3 cut(s) | 160, 416, 949 |
| XceI | RCATGY | 3 cut(s) | 607, 1001, 1160 |
| XmiI | GTMKAC | 1 cut(s) | 1038 |
| XmnI | GAANNNNTTC | 2 cut(s) | 564, 1131 |
| XspI | CTAG | 2 cut(s) | 902, 1257 |
| ZrmI | AGTACT | 1 cut(s) | 377 |