Rh6AG224900

TOM1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003872
Physical Location & Seq
Forward (+)
40556448 .. 40563195
6748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG224900.1

Sequence Viewer

Length: 1323 bp
ATGGTCAAAATAGTAAAGAAGAAGCCAGACTTGAATGTTAGGGAAAAAATACTTATTTTAATAGATACCTGGCAAGAAGCTTTTGGGGGCGCAAGGGGAAGATATCCTCAATACTATGCAGCATATAACGAACTGAGGTCTGCTGGAGTTGAATTTCCACCACGAGAAGAGAACAGTGTACCGCTCTTTACTCCACCACAGACCCAGCCAGTAGTTCCTCCTGTTACATCATACGATGATGCTGCTATTCAGGCTTCTCTGCAGTCTGATGCTTCTGATCTTAGCTTGCCAGAGATTCAAAATGCTCGAGGAATTGCTGATGTCTTGATGGAAATGCTTAGTGCCTTGGATGCTAATAATCCCGAGGGTCTGAAGGAAGAAGTTATTGTTGACCTTGTTGATCAGTGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAATAACACTGCAGATGAGTCCCTTCTGTTTCAAGGATTGGCACTGAACGATGATCTGCAGAAGGTACTTAGTCGGCATGATGACATGGTGAAAGGAACTACAACAGGAGTAAGAGGACCGGAATCTTCTGTTGTGCCACTTGTGAATGTGAACCATGAGGATGATGAGTCGGAGGATGAATTTGCCCAACTAGCTCACAGGTCATCGAGAGATAATTCACAGGGACAGGGCCAGAGATCGGCCAACTCCAATACTGAACCAGTGCGAGCCAGCCCACTTCTTCCTCCTCCACCCTCTTCAAAAAGGCCAATAACCCTTGGTCCTGGTCTAATTGATTATCTCAGTGGTGAAGCCTACAAATCTGGAGGATCCCCTGCAACTTCAGAATCCACGTCCTTTGCAGTTCCCACTCGTTCGAGCCCCAATTCCAGTTCACAGTTGACTCCATTGTCTTCCTCAGCCCCTTCATCCCATTCCACAAACACGACTCCATCACCTTTGTTCACTGGAAAGCCTATTTACGATGAACCTGCTCCAAGAAGCAAATCCATTGATGGGCTCCCTCCAGCTCCTTGGGATGCACAGGCTCCTGGAGGTTCTGTGTCTCCGGGAGGTTCTCAATCTCCTGTCAGCCTTCCGCCTCCACCATCAAGGTATAATCAGAGACAACAGTTTTTTGAGCAGCAAGCAGGTGGTGCTCCTCAAACAAGTAGCGGGTCTGGTTCGTCTTATGACAGTTTAGTGGGACAGACTCAGAACCTCTCTCTTAATTCATCTACCCCCACGAAACAAGTGAAACAGGAAGATGCCCTTTTCAAAGACCTCGTCGATTTTGCGAAAGCAAAGTCATCTTCGTCTGCAAACCCCAATAGATCATTCTGA

Protein Analysis

440

Amino Acids

47.12

Weight (kDa)

4.96

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAT PF03127 106 - 179 1.3e-19 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1121
AasI GACNNNNNNGTC 1 cut(s) 889
Acc36I ACCTGC 2 cut(s) 979, 1121
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 3 cut(s) 182, 1079, 1155
AclWI GGATC 2 cut(s) 804, 817
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 152, 620
AcuI CTGAAG 2 cut(s) 392, 807
AfaI GTAC 3 cut(s) 180, 416, 507
AfiI CCNNNNNNNGG 2 cut(s) 679, 996
AgsI TTSAA 6 cut(s) 34, 152, 299, 473, 741, 1258
AjiI CACGTC 1 cut(s) 834
AjnI CCWGG 3 cut(s) 68, 763, 1030
AjuI GAANNNNNNNTTGG 1 cut(s) 1301
AluBI AGCT 4 cut(s) 80, 285, 635, 1010
AluI AGCT 4 cut(s) 80, 285, 635, 1010
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 2 cut(s) 1050, 1099
AlwI GGATC 2 cut(s) 804, 817
Ama87I CYCGRG 2 cut(s) 306, 362
AoxI GGCC 3 cut(s) 670, 681, 746
ApeKI GCWGC 3 cut(s) 119, 242, 1123
ApoI RAATTY 2 cut(s) 152, 620
ArsI GACNNNNNNTTYG 4 cut(s) 1251, 1271, 1283, 1303
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 557, 670, 761
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 3 cut(s) 541, 800, 927
AvaI CYCGRG 2 cut(s) 306, 362
AvaII GGWCC 2 cut(s) 557, 761
BamHI GGATCC 1 cut(s) 809
BanII GRGCYC 2 cut(s) 863, 1002
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 1141
BbvCI CCTCAGC 1 cut(s) 898
BbvI GCAGC 3 cut(s) 131, 229, 1135
BccI CCATC 4 cut(s) 322, 940, 989, 1096
BceAI ACGGC 1 cut(s) 393
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 953, 987
BciT130I CCWGG 3 cut(s) 70, 765, 1032
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 2 cut(s) 1050, 1099
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 3 cut(s) 260, 450, 497
BfuAI ACCTGC 2 cut(s) 979, 1121
BisI GCNGC 3 cut(s) 120, 243, 1124
BlsI GCNGC 3 cut(s) 121, 244, 1125
Bme1390I CCNGG 4 cut(s) 70, 765, 1032, 1050
Bme18I GGWCC 2 cut(s) 557, 761
BmeT110I CYCGRG 2 cut(s) 306, 362
BmgBI CACGTC 1 cut(s) 834
BmgT120I GGNCC 3 cut(s) 557, 670, 761
BmiI GGNNCC 3 cut(s) 811, 1001, 1029
BmrFI CCNGG 4 cut(s) 70, 765, 1032, 1050
BmsI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 4 cut(s) 165, 825, 990, 1053
Bpu10I CCTNAGC 1 cut(s) 898
BpuMI CCSGG 1 cut(s) 1050
BsaJI CCNNGG 4 cut(s) 345, 363, 757, 1013
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 996
Bse1I ACTGG 4 cut(s) 209, 701, 870, 952
BseBI CCWGG 3 cut(s) 70, 765, 1032
BseDI CCNNGG 4 cut(s) 345, 363, 757, 1013
BseGI GGATG 5 cut(s) 355, 607, 622, 908, 1024
BseLI CCNNNNNNNGG 2 cut(s) 679, 996
BseMII CTCAG 4 cut(s) 125, 796, 912, 1208
BseNI ACTGG 4 cut(s) 209, 701, 870, 952
BseRI GAGGAG 2 cut(s) 717, 1131
BseXI GCAGC 3 cut(s) 131, 229, 1135
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 3 cut(s) 672, 683, 748
BsiHKAI GWGCWC 1 cut(s) 1141
BsiHKCI CYCGRG 2 cut(s) 306, 362
BsiSI CCGG 2 cut(s) 560, 1049
BslFI GGGAC 3 cut(s) 445, 678, 1200
BslI CCNNNNNNNGG 2 cut(s) 679, 996
BsmAI GTCTC 2 cut(s) 1050, 1099
BsmFI GGGAC 3 cut(s) 445, 678, 1200
BsnI GGCC 3 cut(s) 672, 683, 748
BsoBI CYCGRG 2 cut(s) 306, 362
Bsp1286I GDGCHC 3 cut(s) 863, 1002, 1141
Bsp143I GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BspACI CCGC 3 cut(s) 182, 1079, 1155
BspANI GGCC 3 cut(s) 672, 683, 748
BspCNI CTCAG 4 cut(s) 126, 795, 911, 1207
BspLI GGNNCC 3 cut(s) 811, 1001, 1029
BspMAI CTGCAG 3 cut(s) 264, 454, 501
BspMI ACCTGC 2 cut(s) 979, 1121
BspPI GGATC 2 cut(s) 804, 817
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 4 cut(s) 209, 701, 870, 952
BssECI CCNNGG 4 cut(s) 345, 363, 757, 1013
BssMI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 345, 757, 1013
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 70, 765, 1032
Bst4CI ACNGT 4 cut(s) 176, 879, 1113, 1178
Bst6I CTCTTC 2 cut(s) 162, 742
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstC8I GCNNGC 4 cut(s) 287, 708, 712, 1128
BstDEI CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
BstF5I GGATG 5 cut(s) 355, 607, 622, 908, 1024
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 280, 403, 496, 680, 812, 1316
BstMAI GTCTC 2 cut(s) 1050, 1099
BstMBI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BstMWI GCNNNNNNNGC 5 cut(s) 251, 350, 430, 632, 1136
BstNI CCWGG 3 cut(s) 70, 765, 1032
BstSCI CCNGG 4 cut(s) 68, 763, 1030, 1048
BstSFI CTRYAG 3 cut(s) 260, 450, 497
BstV1I GCAGC 3 cut(s) 131, 229, 1135
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 809
BsuRI GGCC 3 cut(s) 672, 683, 748
BtrI CACGTC 1 cut(s) 834
BtsCI GGATG 5 cut(s) 355, 607, 622, 908, 1024
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 7 cut(s) 181, 410, 447, 482, 708, 790, 945
BveI ACCTGC 2 cut(s) 979, 1121
Cac8I GCNNGC 4 cut(s) 287, 708, 712, 1128
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 557, 670, 761
Csp6I GTAC 3 cut(s) 179, 415, 506
CspCI CAANNNNNGTGG 2 cut(s) 820, 855
CviAII CATG 4 cut(s) 430, 518, 526, 596
CviQI GTAC 3 cut(s) 179, 415, 506
DdeI CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
DpnI GATC 6 cut(s) 279, 402, 495, 679, 811, 1315
DpnII GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
DrdI GACNNNNNNGTC 1 cut(s) 889
DseDI GACNNNNNNGTC 1 cut(s) 889
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 162, 742
EarI CTCTTC 2 cut(s) 162, 742
EciI GGCGGA 1 cut(s) 1068
Eco130I CCWWGG 3 cut(s) 345, 757, 1013
Eco24I GRGCYC 2 cut(s) 863, 1002
Eco32I GATATC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 557, 761
Eco57I CTGAAG 2 cut(s) 392, 807
Eco88I CYCGRG 2 cut(s) 306, 362
EcoRII CCWGG 3 cut(s) 68, 763, 1030
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 3 cut(s) 345, 757, 1013
EcoT38I GRGCYC 2 cut(s) 863, 1002
ErhI CCWWGG 3 cut(s) 345, 757, 1013
FaeI CATG 4 cut(s) 433, 521, 529, 599
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 1236, 1268
FaqI GGGAC 3 cut(s) 445, 678, 1200
FatI CATG 4 cut(s) 429, 517, 525, 595
FauI CCCGC 1 cut(s) 1148
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 120, 243, 1124
FokI GGATG 5 cut(s) 362, 614, 629, 895, 1031
FriOI GRGCYC 2 cut(s) 863, 1002
Fsp4HI GCNGC 3 cut(s) 120, 243, 1124
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 120, 243, 1124
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 4 cut(s) 165, 825, 990, 1053
HaeIII GGCC 3 cut(s) 672, 683, 748
HapII CCGG 2 cut(s) 560, 1049
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 433, 521, 529, 599
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 391, 882
HindII GTYRAC 2 cut(s) 391, 882
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 8 cut(s) 295, 458, 563, 608, 827, 883, 928, 1192
HpaII CCGG 2 cut(s) 560, 1049
HphI GGTGA 3 cut(s) 541, 800, 927
Hpy166II GTNNAC 6 cut(s) 179, 391, 592, 875, 882, 945
Hpy188I TCNGA 8 cut(s) 268, 277, 372, 613, 826, 1104, 1197, 1322
Hpy188III TCNNGA 4 cut(s) 325, 362, 648, 804
Hpy8I GTNNAC 6 cut(s) 179, 391, 592, 875, 882, 945
Hpy99I CGWCG 1 cut(s) 1271
HpyAV CCTTC 5 cut(s) 367, 473, 496, 915, 1085
HpyCH4III ACNGT 4 cut(s) 176, 879, 1113, 1178
HpyCH4IV ACGT 1 cut(s) 833
HpyCH4V TGCA 8 cut(s) 119, 262, 452, 499, 818, 842, 1022, 1301
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 350, 430, 632, 1136
HpyF3I CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 4 cut(s) 433, 521, 529, 599
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
LmnI GCTCC 5 cut(s) 979, 1005, 1015, 1033, 1144
Lsp1109I GCAGC 3 cut(s) 131, 229, 1135
LweI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 833
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 279, 402, 495, 679, 811, 1315
MbiI CCGCTC 1 cut(s) 184
MboI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 3 cut(s) 863, 1002, 1141
MluCI AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
MlyI GAGTC 5 cut(s) 467, 617, 877, 922, 1186
MmeI TCCRAC 1 cut(s) 591
MseI TTAA 2 cut(s) 59, 1209
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 2 cut(s) 560, 1049
MspR9I CCNGG 4 cut(s) 70, 765, 1032, 1050
MvaI CCWGG 3 cut(s) 70, 765, 1032
MwoI GCNNNNNNNGC 5 cut(s) 251, 350, 430, 632, 1136
NciI CCSGG 1 cut(s) 1050
NdeII GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
NlaIII CATG 4 cut(s) 433, 521, 529, 599
NlaIV GGNNCC 3 cut(s) 811, 1001, 1029
PaeR7I CTCGAG 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 1121
PfeI GAWTC 3 cut(s) 295, 563, 827
PflFI GACNNNGTC 1 cut(s) 1265
PfoI TCCNGGA 2 cut(s) 1030, 1048
PkrI GCNGC 3 cut(s) 121, 244, 1125
PleI GAGTC 5 cut(s) 466, 616, 877, 922, 1186
PpsI GAGTC 5 cut(s) 466, 616, 877, 922, 1186
Psp6I CCWGG 3 cut(s) 68, 763, 1030
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 3 cut(s) 68, 763, 1030
PspN4I GGNNCC 3 cut(s) 811, 1001, 1029
PspPI GGNCC 3 cut(s) 557, 670, 761
PspXI VCTCGAGB 1 cut(s) 306
PstI CTGCAG 3 cut(s) 264, 454, 501
PsuI RGATCY 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 1265
RsaI GTAC 3 cut(s) 180, 416, 507
RsaNI GTAC 3 cut(s) 179, 415, 506
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 59, 1209
SatI GCNGC 3 cut(s) 120, 243, 1124
Sau3AI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
Sau96I GGNCC 3 cut(s) 557, 670, 761
SchI GAGTC 5 cut(s) 467, 617, 877, 922, 1186
ScrFI CCNGG 4 cut(s) 70, 765, 1032, 1050
SduI GDGCHC 3 cut(s) 863, 1002, 1141
SfaNI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
SfcI CTRYAG 3 cut(s) 260, 450, 497
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 557, 761
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
SsiI CCGC 3 cut(s) 182, 1079, 1155
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 68, 763, 1030, 1048
StyI CCWWGG 3 cut(s) 345, 757, 1013
TaaI ACNGT 4 cut(s) 176, 879, 1113, 1178
TaiI ACGT 1 cut(s) 836
TaqI TCGA 4 cut(s) 307, 647, 857, 1269
TasI AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
TfiI GAWTC 3 cut(s) 295, 563, 827
Tru1I TTAA 2 cut(s) 59, 1209
Tru9I TTAA 2 cut(s) 59, 1209
TscAI CASTG 7 cut(s) 181, 410, 454, 489, 708, 790, 952
TseI GCWGC 3 cut(s) 119, 242, 1123
TspDTI ATGAA 4 cut(s) 633, 897, 981, 1203
TspRI CASTG 7 cut(s) 181, 410, 454, 489, 708, 790, 952
Tth111I GACNNNGTC 1 cut(s) 1265
VpaK11BI GGWCC 2 cut(s) 557, 761
XapI RAATTY 2 cut(s) 152, 620
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.