Rh6BG229000

TOM1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003872
Physical Location & Seq
Forward (+)
43276200 .. 43283033
6834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG229000.1

Sequence Viewer

Length: 1323 bp
ATGGTCAAAATAGTAAAGAAGAAGCCAGACTTGAATGTTAGGGAAAAAATACTTATTTTAATAGATACCTGGCAAGAAGCTTTTGGGGGCGCAAGGGGAAGATATCCTCAATACTATGCAGCATATAACGAACTGAGGTCTGCTGGAGTTGAATTTCCACCACGAGAAGAGAACAGTGTACCGCTCTTTACTCCACCACAGACCCAGCCAGTAGTTCCTCCTGTTACATCATACGATGATGCTGCTATTCAGGCTTCTCTGCAGTCTGATGCTTCTGATCTTAGCTTGCCAGAGATTCAAAATGCTCGAGGAATTGCTGATGTCTTGATGGAAATGCTTAGTGCCTTGGATGCTAATAATCCCGAGGGTCTGAAGGAAGAAGTTATTGTTGACCTTGTTGATCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAATAACACTGCAGATGAGTCCCTTCTGTTTCAGGGATTGGCACTGAACGATGATCTGCAGAAGGTACTTAGTCGGCATGATGACATGGTGAAAGGAACTACAACAGGAGTAAGAGGACCGGAATCTTCTGTTGTGCCACTTGTGAATGTGAACCATGAGGATGATGAGTCGGAGGATGAATTTGCCCAACTAGCTCACAGGTCATCGAGAGATAATTCACAGGGACAGGGCCAGAGATCGGCCAACTCCAATACTGAACCAGTGCGAGCCAGCCCACTTCTTCCTCCTCCACCCTCTTCAAAAAGGCCAATAACCCTTGGTCCTGGTCTAATTGATTATCTCAGTGGTGAAGCCTACAAATCTGGAGGATCCCCTGCAACTTCAGAATCCACGTCCTTTGCAGTTCCCGCTCGTTCGAGCCCCAATTCCAGTTCACAGTTGACTCCATTGTCTTCCTCAGCCCCTTCATCCCATTCCACAAACACGACTCCATCACCTTTGTTCACTGGAAAGCCTATTTACGATGAACCTGCTCCAAGAAGCAAATCCATTGATGGGCTCCCTCCAGCTCCTTGGGATGCACAGGCTCCTGGAGGTTCTGTGTCTCCGGGAGGTTCTCAATCTCCTGTCAGCCTTCCACCTCCACCATCAAGGTATAATCAGAGACAACAGTTTTTTGAGCAGCAAGCAGGTGGTGCTCCTCAAACAAGTAGTGGGTCTGGTTCGCCTTATGACAGTTTAGTGGGACAGACTCAGAACCTCTCTCTTAATTCATCTACCCCCACGAAACAAGTGAAACAAGAAGATGCCCTTTTCAAAGACCTTGTCGATTTTGCGAAAGCCAAGTCATCTTCGTCTTCAAACCCCAATAGATCATTCTGA

Protein Analysis

440

Amino Acids

47.12

Weight (kDa)

4.96

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAT PF03127 106 - 179 1.3e-19 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1121
AasI GACNNNNNNGTC 1 cut(s) 889
Acc36I ACCTGC 2 cut(s) 979, 1121
AccBSI CCGCTC 2 cut(s) 184, 851
AciI CCGC 2 cut(s) 182, 849
AclWI GGATC 2 cut(s) 804, 817
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 152, 620
AcuI CTGAAG 2 cut(s) 392, 807
AfaI GTAC 2 cut(s) 180, 507
AfiI CCNNNNNNNGG 2 cut(s) 679, 996
AgsI TTSAA 6 cut(s) 34, 152, 299, 741, 1258, 1302
AjiI CACGTC 1 cut(s) 834
AjnI CCWGG 3 cut(s) 68, 763, 1030
AjuI GAANNNNNNNTTGG 1 cut(s) 1301
AluBI AGCT 4 cut(s) 80, 285, 635, 1010
AluI AGCT 4 cut(s) 80, 285, 635, 1010
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 2 cut(s) 1050, 1099
AlwI GGATC 2 cut(s) 804, 817
Ama87I CYCGRG 2 cut(s) 306, 362
AoxI GGCC 3 cut(s) 670, 681, 746
ApeKI GCWGC 3 cut(s) 119, 242, 1123
ApoI RAATTY 2 cut(s) 152, 620
ArsI GACNNNNNNTTYG 4 cut(s) 1251, 1271, 1283, 1303
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 557, 670, 761
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 3 cut(s) 541, 800, 927
AvaI CYCGRG 2 cut(s) 306, 362
AvaII GGWCC 2 cut(s) 557, 761
BamHI GGATCC 1 cut(s) 809
BanII GRGCYC 2 cut(s) 863, 1002
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 885, 1290
Bbv12I GWGCWC 1 cut(s) 1141
BbvCI CCTCAGC 1 cut(s) 898
BbvI GCAGC 3 cut(s) 131, 229, 1135
BccI CCATC 4 cut(s) 322, 940, 989, 1096
BceAI ACGGC 1 cut(s) 393
BcgI CGANNNNNNTGC 4 cut(s) 224, 258, 953, 987
BciT130I CCWGG 3 cut(s) 70, 765, 1032
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 2 cut(s) 1050, 1099
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 3 cut(s) 260, 450, 497
BfuAI ACCTGC 2 cut(s) 979, 1121
BisI GCNGC 3 cut(s) 120, 243, 1124
BlsI GCNGC 3 cut(s) 121, 244, 1125
Bme1390I CCNGG 4 cut(s) 70, 765, 1032, 1050
Bme18I GGWCC 2 cut(s) 557, 761
BmeT110I CYCGRG 2 cut(s) 306, 362
BmgBI CACGTC 1 cut(s) 834
BmgT120I GGNCC 3 cut(s) 557, 670, 761
BmiI GGNNCC 3 cut(s) 811, 1001, 1029
BmrFI CCNGG 4 cut(s) 70, 765, 1032, 1050
BmsI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
BpiI GAAGAC 2 cut(s) 885, 1290
BpmI CTGGAG 4 cut(s) 165, 825, 990, 1053
Bpu10I CCTNAGC 1 cut(s) 898
BpuMI CCSGG 1 cut(s) 1050
BsaJI CCNNGG 4 cut(s) 345, 363, 757, 1013
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 996
Bse1I ACTGG 4 cut(s) 209, 701, 870, 952
BseBI CCWGG 3 cut(s) 70, 765, 1032
BseDI CCNNGG 4 cut(s) 345, 363, 757, 1013
BseGI GGATG 5 cut(s) 355, 607, 622, 908, 1024
BseLI CCNNNNNNNGG 2 cut(s) 679, 996
BseMII CTCAG 4 cut(s) 125, 796, 912, 1208
BseNI ACTGG 4 cut(s) 209, 701, 870, 952
BseRI GAGGAG 2 cut(s) 717, 1131
BseXI GCAGC 3 cut(s) 131, 229, 1135
BseYI CCCAGC 1 cut(s) 204
BshFI GGCC 3 cut(s) 672, 683, 748
BsiHKAI GWGCWC 1 cut(s) 1141
BsiHKCI CYCGRG 2 cut(s) 306, 362
BsiSI CCGG 2 cut(s) 560, 1049
BslFI GGGAC 3 cut(s) 445, 678, 1200
BslI CCNNNNNNNGG 2 cut(s) 679, 996
BsmAI GTCTC 2 cut(s) 1050, 1099
BsmFI GGGAC 3 cut(s) 445, 678, 1200
BsnI GGCC 3 cut(s) 672, 683, 748
BsoBI CYCGRG 2 cut(s) 306, 362
Bsp1286I GDGCHC 3 cut(s) 863, 1002, 1141
Bsp143I GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BspACI CCGC 2 cut(s) 182, 849
BspANI GGCC 3 cut(s) 672, 683, 748
BspCNI CTCAG 4 cut(s) 126, 795, 911, 1207
BspLI GGNNCC 3 cut(s) 811, 1001, 1029
BspMAI CTGCAG 3 cut(s) 264, 454, 501
BspMI ACCTGC 2 cut(s) 979, 1121
BspPI GGATC 2 cut(s) 804, 817
BsrBI CCGCTC 2 cut(s) 184, 851
BsrI ACTGG 4 cut(s) 209, 701, 870, 952
BssECI CCNNGG 4 cut(s) 345, 363, 757, 1013
BssMI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 345, 757, 1013
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 70, 765, 1032
Bst4CI ACNGT 4 cut(s) 176, 879, 1113, 1178
Bst6I CTCTTC 2 cut(s) 162, 742
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstC8I GCNNGC 4 cut(s) 287, 708, 712, 1128
BstDEI CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
BstF5I GGATG 5 cut(s) 355, 607, 622, 908, 1024
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 280, 403, 496, 680, 812, 1316
BstMAI GTCTC 2 cut(s) 1050, 1099
BstMBI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
BstMWI GCNNNNNNNGC 6 cut(s) 251, 350, 430, 632, 848, 1136
BstNI CCWGG 3 cut(s) 70, 765, 1032
BstSCI CCNGG 4 cut(s) 68, 763, 1030, 1048
BstSFI CTRYAG 3 cut(s) 260, 450, 497
BstV1I GCAGC 3 cut(s) 131, 229, 1135
BstV2I GAAGAC 2 cut(s) 885, 1290
BstX2I RGATCY 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 1014
BstYI RGATCY 1 cut(s) 809
BsuRI GGCC 3 cut(s) 672, 683, 748
BtrI CACGTC 1 cut(s) 834
BtsCI GGATG 5 cut(s) 355, 607, 622, 908, 1024
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 7 cut(s) 181, 410, 447, 482, 708, 790, 945
BveI ACCTGC 2 cut(s) 979, 1121
Cac8I GCNNGC 4 cut(s) 287, 708, 712, 1128
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 557, 670, 761
Csp6I GTAC 2 cut(s) 179, 506
CspCI CAANNNNNGTGG 2 cut(s) 820, 855
CviAII CATG 4 cut(s) 430, 518, 526, 596
CviQI GTAC 2 cut(s) 179, 506
DdeI CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
DpnI GATC 6 cut(s) 279, 402, 495, 679, 811, 1315
DpnII GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
DrdI GACNNNNNNGTC 1 cut(s) 889
DseDI GACNNNNNNGTC 1 cut(s) 889
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 162, 742
EarI CTCTTC 2 cut(s) 162, 742
Eco130I CCWWGG 3 cut(s) 345, 757, 1013
Eco24I GRGCYC 2 cut(s) 863, 1002
Eco32I GATATC 1 cut(s) 104
Eco47I GGWCC 2 cut(s) 557, 761
Eco57I CTGAAG 2 cut(s) 392, 807
Eco88I CYCGRG 2 cut(s) 306, 362
EcoRII CCWGG 3 cut(s) 68, 763, 1030
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 3 cut(s) 345, 757, 1013
EcoT38I GRGCYC 2 cut(s) 863, 1002
ErhI CCWWGG 3 cut(s) 345, 757, 1013
FaeI CATG 4 cut(s) 433, 521, 529, 599
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 1236, 1268
FaqI GGGAC 3 cut(s) 445, 678, 1200
FatI CATG 4 cut(s) 429, 517, 525, 595
FauI CCCGC 1 cut(s) 856
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 120, 243, 1124
FokI GGATG 5 cut(s) 362, 614, 629, 895, 1031
FriOI GRGCYC 2 cut(s) 863, 1002
Fsp4HI GCNGC 3 cut(s) 120, 243, 1124
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 120, 243, 1124
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 4 cut(s) 165, 825, 990, 1053
HaeIII GGCC 3 cut(s) 672, 683, 748
HapII CCGG 2 cut(s) 560, 1049
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 433, 521, 529, 599
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 391, 882
HindII GTYRAC 2 cut(s) 391, 882
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 8 cut(s) 295, 458, 563, 608, 827, 883, 928, 1192
HpaII CCGG 2 cut(s) 560, 1049
HphI GGTGA 3 cut(s) 541, 800, 927
Hpy166II GTNNAC 6 cut(s) 179, 391, 592, 875, 882, 945
Hpy188I TCNGA 8 cut(s) 268, 277, 372, 613, 826, 1104, 1197, 1322
Hpy188III TCNNGA 4 cut(s) 325, 362, 648, 804
Hpy8I GTNNAC 6 cut(s) 179, 391, 592, 875, 882, 945
HpyAV CCTTC 5 cut(s) 367, 473, 496, 915, 1085
HpyCH4III ACNGT 4 cut(s) 176, 879, 1113, 1178
HpyCH4IV ACGT 1 cut(s) 833
HpyCH4V TGCA 7 cut(s) 119, 262, 452, 499, 818, 842, 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 350, 430, 632, 848, 1136
HpyF3I CTNAG 7 cut(s) 134, 281, 338, 509, 782, 898, 1194
HpySE526I ACGT 1 cut(s) 833
Hsp92II CATG 4 cut(s) 433, 521, 529, 599
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
LmnI GCTCC 5 cut(s) 979, 1005, 1015, 1033, 1144
Lsp1109I GCAGC 3 cut(s) 131, 229, 1135
LweI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 833
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 279, 402, 495, 679, 811, 1315
MbiI CCGCTC 2 cut(s) 184, 851
MboI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 3 cut(s) 863, 1002, 1141
MluCI AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
MlyI GAGTC 5 cut(s) 467, 617, 877, 922, 1186
MmeI TCCRAC 1 cut(s) 591
MseI TTAA 2 cut(s) 59, 1209
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 2 cut(s) 560, 1049
MspR9I CCNGG 4 cut(s) 70, 765, 1032, 1050
MvaI CCWGG 3 cut(s) 70, 765, 1032
MwoI GCNNNNNNNGC 6 cut(s) 251, 350, 430, 632, 848, 1136
NciI CCSGG 1 cut(s) 1050
NdeII GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
NlaIII CATG 4 cut(s) 433, 521, 529, 599
NlaIV GGNNCC 3 cut(s) 811, 1001, 1029
PaeR7I CTCGAG 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 1121
PfeI GAWTC 3 cut(s) 295, 563, 827
PflFI GACNNNGTC 1 cut(s) 1265
PfoI TCCNGGA 2 cut(s) 1030, 1048
PkrI GCNGC 3 cut(s) 121, 244, 1125
PleI GAGTC 5 cut(s) 466, 616, 877, 922, 1186
PpsI GAGTC 5 cut(s) 466, 616, 877, 922, 1186
Psp6I CCWGG 3 cut(s) 68, 763, 1030
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 3 cut(s) 68, 763, 1030
PspN4I GGNNCC 3 cut(s) 811, 1001, 1029
PspPI GGNCC 3 cut(s) 557, 670, 761
PspXI VCTCGAGB 1 cut(s) 306
PstI CTGCAG 3 cut(s) 264, 454, 501
PsuI RGATCY 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 1265
RsaI GTAC 2 cut(s) 180, 507
RsaNI GTAC 2 cut(s) 179, 506
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 59, 1209
SatI GCNGC 3 cut(s) 120, 243, 1124
Sau3AI GATC 6 cut(s) 277, 400, 493, 677, 809, 1313
Sau96I GGNCC 3 cut(s) 557, 670, 761
SchI GAGTC 5 cut(s) 467, 617, 877, 922, 1186
ScrFI CCNGG 4 cut(s) 70, 765, 1032, 1050
SduI GDGCHC 3 cut(s) 863, 1002, 1141
SfaNI GCATC 5 cut(s) 229, 259, 340, 1009, 1237
SfcI CTRYAG 3 cut(s) 260, 450, 497
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 557, 761
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
SsiI CCGC 2 cut(s) 182, 849
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 4 cut(s) 68, 763, 1030, 1048
StyI CCWWGG 3 cut(s) 345, 757, 1013
TaaI ACNGT 4 cut(s) 176, 879, 1113, 1178
TaiI ACGT 1 cut(s) 836
TaqI TCGA 4 cut(s) 307, 647, 857, 1269
TasI AATT 7 cut(s) 152, 312, 620, 655, 771, 865, 1210
TfiI GAWTC 3 cut(s) 295, 563, 827
Tru1I TTAA 2 cut(s) 59, 1209
Tru9I TTAA 2 cut(s) 59, 1209
TscAI CASTG 7 cut(s) 181, 410, 454, 489, 708, 790, 952
TseI GCWGC 3 cut(s) 119, 242, 1123
TspDTI ATGAA 5 cut(s) 402, 633, 897, 981, 1203
TspRI CASTG 7 cut(s) 181, 410, 454, 489, 708, 790, 952
Tth111I GACNNNGTC 1 cut(s) 1265
VpaK11BI GGWCC 2 cut(s) 557, 761
XapI RAATTY 2 cut(s) 152, 620
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.