MD10G1007100.v1.1

TOM1-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
1050776 .. 1066769
15994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1007100.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGGGCACAAATTTTTGTGGGTTTCTTGATGTGGGACTTGTATTGGTGTTAAGCGAAAAAGACTTGCGTGAAGGGGATTACGACATGGCTGGTAATGGTGCGGCCTGTGCAGAGAGGGCAACAAGTGATATGTTGATTGGCCCAGACTGGGCAAATTATGCAAGCAAAAGAGGCCTTGAAGATACGAAGCGCCTGGGCAGCAAAAATCCAAAAATACAACTCCTGGCTCTTTTTGCATTGGAGACTGTGAGCAAGAACTGTGGTGAGAATGTTTTTCAGCAGATCGTTGAGCGTGATATCTTGCATGAAATGGTCAAAATAGTAAAGAAGAAGCCAGACTTGAATGTTAGGGAAAAGATACTAATTTTGATAGATACATGGCAAGAAGCTTTTGGGGGACCAAGGGGAAGATTTCCCCAGTATTATGCAGCATATAATGAATTGAGGTCTGCAGGAGTTGAATTTCCACCAAGAGAAGAGAACAGTGTACCAATATTTACTCCGCCCCAGACCCAGCCAGTAGTTTCTCCTGTTACATCATATGATGATGCTGCCATTCAGGCTTCTCTCCAGTCGGATGCATCGGGCCTTAGCTTGCCAGAGATTCAGTATGCTCGTGGAATTGCAGATGTGTTGATGGAAATGCTTAATGCCTTGGATGCTAAGAATCCTGAGGGTTTGAAGGAAGAAGTGATTGTTGACCTTGTTGATCAGTGCCGTTCATACCAAAAGCGTGTCAGGCTTCTTGTGAATGAGACTGCAGATGAGGAGCTTCTATGTCAGGGATTGGCACTGAACGATGATCTGCAGCGTGTAATTTCTCGGCATGACGATATTGTGAAAGGAACTACAACTGTAGTAAGAGGAGCAGAATCTTCAGTTGTGCCACTTGTGAATGTGAACCATGAGGATGATGAGTCTGAGGATGAATTTTCCCAACTAGCGCACAGGTCATCAAGAGATAATTCACAAGGACAGGGCCAGAGATCAGCCAATGCCAAGGCTGAACCTGTGCAAGTCAGCCCACTTCTTCCTCTTCCACCGTCTTCGCAAAGGCCAATCACTCTAGGTCCTGGTGTGATTGATTATCTCAGTGGAGAAGCCTACAAATCTGAAGGATCCTCTGCAACATCAGAATCCACATCTTTTGCCGCTCCAGTTCATTCCAGCTCCACCTCACGATTGACTCCACTATCACCTTCACACCCTTCTTCCCAAAACACAACTCCATCACCTATATTCACTGGAAAGCCTGTATATGATGAACCGGCTCCTAGAAGCAAATCTATAGATGGGCTACCTCCTGCTCCTTGGGATACTCAGTCTCTGGGGAATCCTCAGTCTCCTGGCAATGGTCAATCTCCTGTCAGCCTTCCACCTCCGCCTTCCAGGTATAACCAGAGACAACAGTTTTTTGAGAAACAAGGCGTTCCAGGCAGTGGATCTGGTTCATCTTATGACAACTTAGTGGGACAGACTCAGAATCTCTCCCTTAATTCGTCTACCCCAACAAAACAAGTAAAACAGGAAGATGCTCTTTTCAAGGATCTAGTTGATTTTGCAAAAGCCAAGTCATCTTCTTCAAATCCGAATAGGTCATTTTGA

Protein Analysis

535

Amino Acids

57.97

Weight (kDa)

4.97

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 63 - 131 1.1e-13 VHS domain
GAT PF03127 209 - 282 1.3e-19 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1439
AccBSI CCGCTC 1 cut(s) 1154
AccI GTMKAC 1 cut(s) 1502
AciI CCGC 4 cut(s) 101, 503, 1152, 1382
AclWI GGATC 4 cut(s) 1113, 1126, 1450, 1554
AcsI RAATTY 3 cut(s) 10, 461, 929
AcuI CTGAAG 2 cut(s) 861, 1134
AfaI GTAC 1 cut(s) 489
AfiI CCNNNNNNNGG 3 cut(s) 148, 1352, 1439
AgsI TTSAA 6 cut(s) 179, 343, 461, 682, 1543, 1584
AjnI CCWGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
AluBI AGCT 4 cut(s) 389, 594, 772, 1170
AluI AGCT 4 cut(s) 389, 594, 772, 1170
Alw26I GTCTC 5 cut(s) 236, 749, 1329, 1347, 1396
AlwI GGATC 4 cut(s) 1113, 1126, 1450, 1554
AlwNI CAGNNNCTG 1 cut(s) 1327
AoxI GGCC 6 cut(s) 102, 139, 172, 586, 979, 1055
ApeKI GCWGC 4 cut(s) 198, 428, 551, 808
ApoI RAATTY 3 cut(s) 10, 461, 929
ArsI GACNNNNNNTTYG 2 cut(s) 1556, 1588
AspLEI GCGC 2 cut(s) 192, 946
AspS9I GGNCC 5 cut(s) 140, 398, 586, 979, 1070
AsuHPI GGTGA 3 cut(s) 275, 1188, 1224
AvaII GGWCC 2 cut(s) 398, 1070
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 1118
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 1038
BbvI GCAGC 4 cut(s) 210, 440, 538, 820
BccI CCATC 3 cut(s) 631, 1237, 1286
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
BciVI GTATCC 1 cut(s) 1309
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 5 cut(s) 236, 749, 1329, 1347, 1396
BfaI CTAG 4 cut(s) 941, 1067, 1275, 1550
BfmI CTRYAG 5 cut(s) 450, 759, 806, 855, 1287
BfoI RGCGCY 1 cut(s) 193
BfuI GTATCC 1 cut(s) 1309
BglI GCCNNNNNGGC 1 cut(s) 560
BisI GCNGC 6 cut(s) 102, 199, 429, 552, 809, 1152
BlsI GCNGC 6 cut(s) 103, 200, 430, 553, 810, 1153
Bme1390I CCNGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
Bme18I GGWCC 2 cut(s) 398, 1070
BmgT120I GGNCC 5 cut(s) 140, 398, 586, 979, 1070
BmiI GGNNCC 3 cut(s) 399, 1120, 1272
BmrFI CCNGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
BmrI ACTGGG 2 cut(s) 157, 412
BmsI GCATC 5 cut(s) 538, 568, 590, 649, 1522
BmuI ACTGGG 2 cut(s) 157, 412
BpiI GAAGAC 1 cut(s) 1038
BpmI CTGGAG 2 cut(s) 554, 1140
Bpu10I CCTNAGC 1 cut(s) 590
BsaJI CCNNGG 5 cut(s) 193, 401, 654, 999, 1310
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 1352, 1439
Bse118I RCCGGY 1 cut(s) 1267
Bse1I ACTGG 6 cut(s) 152, 418, 518, 571, 1157, 1249
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 1 cut(s) 1357
BseBI CCWGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
BseDI CCNNGG 5 cut(s) 193, 401, 654, 999, 1310
BseGI GGATG 4 cut(s) 583, 664, 916, 931
BseLI CCNNNNNNNGG 3 cut(s) 148, 1352, 1439
BseMI GCAATG 1 cut(s) 1357
BseMII CTCAG 6 cut(s) 663, 912, 1105, 1334, 1352, 1493
BseNI ACTGG 6 cut(s) 152, 418, 518, 571, 1157, 1249
BseRI GAGGAG 2 cut(s) 782, 879
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 210, 440, 538, 820
BseYI CCCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 6 cut(s) 104, 141, 174, 588, 981, 1057
BsiSI CCGG 1 cut(s) 1268
BslFI GGGAC 3 cut(s) 48, 411, 1485
BslI CCNNNNNNNGG 3 cut(s) 148, 1352, 1439
BsmAI GTCTC 5 cut(s) 236, 749, 1329, 1347, 1396
BsmFI GGGAC 3 cut(s) 48, 411, 1485
BsnI GGCC 6 cut(s) 104, 141, 174, 588, 981, 1057
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
BspACI CCGC 4 cut(s) 101, 503, 1152, 1382
BspANI GGCC 6 cut(s) 104, 141, 174, 588, 981, 1057
BspCNI CTCAG 6 cut(s) 664, 913, 1104, 1333, 1351, 1492
BspLI GGNNCC 3 cut(s) 399, 1120, 1272
BspMAI CTGCAG 3 cut(s) 454, 763, 810
BspPI GGATC 4 cut(s) 1113, 1126, 1450, 1554
BsrBI CCGCTC 1 cut(s) 1154
BsrDI GCAATG 1 cut(s) 1357
BsrFI RCCGGY 1 cut(s) 1267
BsrI ACTGG 6 cut(s) 152, 418, 518, 571, 1157, 1249
BssAI RCCGGY 1 cut(s) 1267
BssECI CCNNGG 5 cut(s) 193, 401, 654, 999, 1310
BssMI GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 4 cut(s) 401, 654, 999, 1310
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
Bst4CI ACNGT 6 cut(s) 247, 260, 485, 856, 1044, 1410
Bst6I CTCTTC 2 cut(s) 471, 1041
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 163, 596
BstDEI CTNAG 9 cut(s) 590, 663, 672, 921, 1091, 1320, 1338, 1465, 1479
BstF5I GGATG 4 cut(s) 583, 664, 916, 931
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 2 cut(s) 192, 946
BstKTI GATC 7 cut(s) 285, 712, 805, 989, 1121, 1445, 1549
BstMAI GTCTC 5 cut(s) 236, 749, 1329, 1347, 1396
BstMBI GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
BstNI CCWGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
BstSCI CCNGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
BstSFI CTRYAG 5 cut(s) 450, 759, 806, 855, 1287
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 210, 440, 538, 820
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 3 cut(s) 1118, 1442, 1546
BstYI RGATCY 3 cut(s) 1118, 1442, 1546
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 1309
BsuRI GGCC 6 cut(s) 104, 141, 174, 588, 981, 1057
BtsCI GGATG 4 cut(s) 583, 664, 916, 931
BtsI GCAGTG 1 cut(s) 1444
BtsIMutI CAGTG 6 cut(s) 490, 719, 791, 1099, 1242, 1444
Cac8I GCNNGC 2 cut(s) 163, 596
CaiI CAGNNNCTG 1 cut(s) 1327
CfoI GCGC 2 cut(s) 192, 946
Cfr10I RCCGGY 1 cut(s) 1267
Cfr13I GGNCC 5 cut(s) 140, 398, 586, 979, 1070
Csp6I GTAC 1 cut(s) 488
CspCI CAANNNNNGTGG 4 cut(s) 241, 276, 1129, 1164
CviAII CATG 5 cut(s) 85, 305, 378, 827, 905
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 9 cut(s) 590, 663, 672, 921, 1091, 1320, 1338, 1465, 1479
DpnI GATC 7 cut(s) 284, 711, 804, 988, 1120, 1444, 1548
DpnII GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
Eam1104I CTCTTC 2 cut(s) 471, 1041
EarI CTCTTC 2 cut(s) 471, 1041
EciI GGCGGA 2 cut(s) 492, 1371
Eco130I CCWWGG 4 cut(s) 401, 654, 999, 1310
Eco147I AGGCCT 1 cut(s) 174
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 398, 1070
Eco57I CTGAAG 2 cut(s) 861, 1134
Eco81I CCTNAGG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 4 cut(s) 401, 654, 999, 1310
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 4 cut(s) 401, 654, 999, 1310
FaeI CATG 5 cut(s) 88, 308, 381, 830, 908
FalI AAGNNNNNCTT 4 cut(s) 323, 355, 1521, 1553
FaqI GGGAC 3 cut(s) 48, 411, 1485
FatI CATG 5 cut(s) 84, 304, 377, 826, 904
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 1 cut(s) 1502
Fnu4HI GCNGC 6 cut(s) 102, 199, 429, 552, 809, 1152
FokI GGATG 4 cut(s) 590, 671, 923, 938
Fsp4HI GCNGC 6 cut(s) 102, 199, 429, 552, 809, 1152
FspBI CTAG 4 cut(s) 941, 1067, 1275, 1550
GlaI GCGC 2 cut(s) 191, 945
GluI GCNGC 6 cut(s) 102, 199, 429, 552, 809, 1152
GsaI CCCAGC 1 cut(s) 517
GsuI CTGGAG 2 cut(s) 554, 1140
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 6 cut(s) 104, 141, 174, 588, 981, 1057
HapII CCGG 1 cut(s) 1268
HhaI GCGC 2 cut(s) 192, 946
Hin1II CATG 5 cut(s) 88, 308, 381, 830, 908
Hin6I GCGC 2 cut(s) 190, 944
HinP1I GCGC 2 cut(s) 190, 944
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 9 cut(s) 604, 667, 872, 917, 1136, 1186, 1333, 1477, 1483
HpaII CCGG 1 cut(s) 1268
HphI GGTGA 3 cut(s) 275, 1188, 1224
Hpy166II GTNNAC 4 cut(s) 488, 700, 901, 1503
Hpy188I TCNGA 6 cut(s) 577, 922, 1114, 1135, 1482, 1590
Hpy188III TCNNGA 4 cut(s) 26, 671, 957, 1179
Hpy8I GTNNAC 4 cut(s) 488, 700, 901, 1503
HpyAV CCTTC 7 cut(s) 65, 676, 1109, 1209, 1218, 1382, 1395
HpyCH4III ACNGT 6 cut(s) 247, 260, 485, 856, 1044, 1410
HpyF3I CTNAG 9 cut(s) 590, 663, 672, 921, 1091, 1320, 1338, 1465, 1479
Hsp92II CATG 5 cut(s) 88, 308, 381, 830, 908
HspAI GCGC 2 cut(s) 190, 944
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
LmnI GCTCC 6 cut(s) 769, 866, 1159, 1175, 1276, 1312
Lsp1109I GCAGC 4 cut(s) 210, 440, 538, 820
LweI GCATC 5 cut(s) 538, 568, 590, 649, 1522
MaeI CTAG 4 cut(s) 941, 1067, 1275, 1550
MaeIII GTNAC 1 cut(s) 532
MalI GATC 7 cut(s) 284, 711, 804, 988, 1120, 1444, 1548
MbiI CCGCTC 1 cut(s) 1154
MboI GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
MflI RGATCY 3 cut(s) 1118, 1442, 1546
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 3 cut(s) 926, 1180, 1471
MmeI TCCRAC 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 583
MseI TTAA 3 cut(s) 50, 648, 1494
MslI CAYNNNNRTG 1 cut(s) 909
MspI CCGG 1 cut(s) 1268
MspR9I CCNGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
MvaI CCWGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
NdeI CATATG 1 cut(s) 541
NdeII GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
NlaIII CATG 5 cut(s) 88, 308, 381, 830, 908
NlaIV GGNNCC 3 cut(s) 399, 1120, 1272
NmeAIII GCCGAG 1 cut(s) 802
NsiI ATGCAT 1 cut(s) 583
PceI AGGCCT 1 cut(s) 174
PfeI GAWTC 6 cut(s) 604, 667, 872, 1136, 1333, 1483
PflMI CCANNNNNTGG 1 cut(s) 1439
PkrI GCNGC 6 cut(s) 103, 200, 430, 553, 810, 1153
PleI GAGTC 3 cut(s) 925, 1180, 1471
PpsI GAGTC 3 cut(s) 925, 1180, 1471
PpuMI RGGWCCY 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
PspFI CCCAGC 1 cut(s) 513
PspGI CCWGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
PspN4I GGNNCC 3 cut(s) 399, 1120, 1272
PspPI GGNCC 5 cut(s) 140, 398, 586, 979, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PstI CTGCAG 3 cut(s) 454, 763, 810
PstNI CAGNNNCTG 1 cut(s) 1327
PsuI RGATCY 3 cut(s) 1118, 1442, 1546
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
RseI CAYNNNNRTG 1 cut(s) 909
SaqAI TTAA 3 cut(s) 50, 648, 1494
SatI GCNGC 6 cut(s) 102, 199, 429, 552, 809, 1152
Sau3AI GATC 7 cut(s) 282, 709, 802, 986, 1118, 1442, 1546
Sau96I GGNCC 5 cut(s) 140, 398, 586, 979, 1070
SchI GAGTC 3 cut(s) 926, 1180, 1471
ScrFI CCNGG 6 cut(s) 194, 224, 1074, 1347, 1390, 1434
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 5 cut(s) 538, 568, 590, 649, 1522
SfcI CTRYAG 5 cut(s) 450, 759, 806, 855, 1287
SinI GGWCC 2 cut(s) 398, 1070
SmiMI CAYNNNNRTG 1 cut(s) 909
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 4 cut(s) 101, 503, 1152, 1382
SspI AATATT 1 cut(s) 495
SspMI CTAG 4 cut(s) 941, 1067, 1275, 1550
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 6 cut(s) 192, 222, 1072, 1345, 1388, 1432
StyI CCWWGG 4 cut(s) 401, 654, 999, 1310
TaaI ACNGT 6 cut(s) 247, 260, 485, 856, 1044, 1410
TauI GCSGC 2 cut(s) 104, 1154
TfiI GAWTC 6 cut(s) 604, 667, 872, 1136, 1333, 1483
Tru1I TTAA 3 cut(s) 50, 648, 1494
Tru9I TTAA 3 cut(s) 50, 648, 1494
TscAI CASTG 6 cut(s) 490, 719, 798, 1099, 1249, 1444
TseI GCWGC 4 cut(s) 198, 428, 551, 808
TspDTI ATGAA 7 cut(s) 321, 453, 711, 942, 1151, 1278, 1440
TspRI CASTG 6 cut(s) 490, 719, 798, 1099, 1249, 1444
Van91I CCANNNNNTGG 1 cut(s) 1439
VpaK11BI GGWCC 2 cut(s) 398, 1070
XapI RAATTY 3 cut(s) 10, 461, 929
XmiI GTMKAC 1 cut(s) 1502
XspI CTAG 4 cut(s) 941, 1067, 1275, 1550
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.