Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265659.1

Orthogroup ID

OG0003872

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 572

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 572 bp

taacccttggtcctggtctaattgattatctcagtggtgaagcctacaaatctggaggatcccctgcaacttcagaatccacgtcctttgcagttcccactcgttcgagccccaattccagttcacagttgactccattgtcttcctcagccccttcatcccattccacaaacacgactccatcacctttgttcactggaaagcctatttacgatgaacctgctccaagaagcaaatccattgatgggctccctccagctccttgggatgcacaggctcctggaggttctgtgtctccgggaggttctcaatctcctgtcagccttccgcctccaccatcaaggtataatcagagacaacagttttttgagcagcaagcaggtggtgctcctcaaacaagtagcgggtctggttcgtcttatgacagtttagtgggacagactcagaacctctctcttaattcatctacccccacgaaacaagtgaaacaggaagatgcccttttcaaagacctcgtcgattttgcgaaagccaagtcatcttcgtctgcaaaccccaatagatcattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

189

Amino Acids

19.47

Weight (kDa)

6.48

Isoelectric Point (pI)

75.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21380 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970
fragaria_vesca	FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400
malus_domestica	MD05G1008800.v1.1 MD10G1007100.v1.1 MD10G1007700.v1.1
prunus_persica	Prupe.8G010900_v2.0.a1 Prupe.8G010900_v2.0.a1
pyrus_communis	pycom05g00450 pycom10g00480
rosa_chinensis	RchiOBHm_Chr6g0278141
rosa_laevigata	RLG00000013238
rosa_multiflora	Rmu_co8265659.1_g000001 Rmu_sc0000791.1_g000057 Rmu_sc0000857.1_g000058
rosa_roxburghii	Rroxscaffold_7G00190500
rosa_rugosa	Rorug06G0114900
rosa_samantha	Rh6AG224900 Rh6BG229000 Rh6CG231500 Rh6DG222300
rosa_wichuraiana	Rw6G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
AasI	GACNNNNNNGTC	1 cut(s)	138
Acc36I	ACCTGC	2 cut(s)	228, 370
AciI	CCGC	2 cut(s)	328, 404
AclWI	GGATC	2 cut(s)	53, 66
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	507
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	12, 279
AjuI	GAANNNNNNNTTGG	1 cut(s)	550
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	299, 348
AlwI	GGATC	2 cut(s)	53, 66
ApeKI	GCWGC	1 cut(s)	372
ArsI	GACNNNNNNTTYG	4 cut(s)	500, 520, 532, 552
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	49, 176
AvaII	GGWCC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	112, 251
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	3 cut(s)	189, 238, 345
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	2 cut(s)	14, 281
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	299, 348
BfuAI	ACCTGC	2 cut(s)	228, 370
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme1390I	CCNGG	3 cut(s)	14, 281, 299
Bme18I	GGWCC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	60, 250, 278
BmrFI	CCNGG	3 cut(s)	14, 281, 299
BmsI	GCATC	2 cut(s)	258, 486
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	3 cut(s)	74, 239, 302
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	6, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	119, 201
BseBI	CCWGG	2 cut(s)	14, 281
BseDI	CCNNGG	2 cut(s)	6, 262
BseGI	GGATG	2 cut(s)	157, 273
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	3 cut(s)	45, 161, 457
BseNI	ACTGG	2 cut(s)	119, 201
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	299, 348
BsmFI	GGGAC	1 cut(s)	449
Bsp1286I	GDGCHC	3 cut(s)	112, 251, 390
Bsp143I	GATC	2 cut(s)	58, 562
BspACI	CCGC	2 cut(s)	328, 404
BspCNI	CTCAG	3 cut(s)	44, 160, 456
BspLI	GGNNCC	3 cut(s)	60, 250, 278
BspMI	ACCTGC	2 cut(s)	228, 370
BspPI	GGATC	2 cut(s)	53, 66
BsrI	ACTGG	2 cut(s)	119, 201
BssECI	CCNNGG	2 cut(s)	6, 262
BssMI	GATC	2 cut(s)	58, 562
BssT1I	CCWWGG	2 cut(s)	6, 262
Bst2UI	CCWGG	2 cut(s)	14, 281
Bst4CI	ACNGT	3 cut(s)	128, 362, 427
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	31, 147, 443
BstF5I	GGATG	2 cut(s)	157, 273
BstKTI	GATC	2 cut(s)	61, 565
BstMAI	GTCTC	2 cut(s)	299, 348
BstMBI	GATC	2 cut(s)	58, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	2 cut(s)	14, 281
BstSCI	CCNGG	3 cut(s)	12, 279, 297
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	157, 273
BtsIMutI	CAGTG	2 cut(s)	39, 194
BveI	ACCTGC	2 cut(s)	228, 370
Cac8I	GCNNGC	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviJI	RGCY	9 cut(s)	43, 110, 151, 204, 249, 259, 277, 323, 532
CviKI_1	RGCY	9 cut(s)	43, 110, 151, 204, 249, 259, 277, 323, 532
DdeI	CTNAG	3 cut(s)	31, 147, 443
DpnI	GATC	2 cut(s)	60, 564
DpnII	GATC	2 cut(s)	58, 562
DrdI	GACNNNNNNGTC	1 cut(s)	138
DseDI	GACNNNNNNGTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	6, 262
Eco24I	GRGCYC	2 cut(s)	112, 251
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	12, 279
EcoT14I	CCWWGG	2 cut(s)	6, 262
EcoT38I	GRGCYC	2 cut(s)	112, 251
ErhI	CCWWGG	2 cut(s)	6, 262
FaiI	YATR	2 cut(s)	347, 422
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	2 cut(s)	144, 280
FriOI	GRGCYC	2 cut(s)	112, 251
Fsp4HI	GCNGC	1 cut(s)	373
GluI	GCNGC	1 cut(s)	373
GsuI	CTGGAG	3 cut(s)	74, 239, 302
HapII	CCGG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	4 cut(s)	76, 132, 177, 441
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	2 cut(s)	49, 176
Hpy166II	GTNNAC	3 cut(s)	124, 131, 194
Hpy188I	TCNGA	4 cut(s)	75, 353, 446, 571
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	3 cut(s)	124, 131, 194
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	164, 334
HpyCH4III	ACNGT	3 cut(s)	128, 362, 427
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	67, 91, 271, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	3 cut(s)	31, 147, 443
HpySE526I	ACGT	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	58, 562
LmnI	GCTCC	5 cut(s)	228, 254, 264, 282, 393
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	258, 486
MaeII	ACGT	1 cut(s)	82
MalI	GATC	2 cut(s)	60, 564
MboI	GATC	2 cut(s)	58, 562
MboII	GAAGA	3 cut(s)	134, 505, 533
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	3 cut(s)	112, 251, 390
MluCI	AATT	3 cut(s)	20, 114, 459
MlyI	GAGTC	3 cut(s)	126, 171, 435
MnlI	CCTC	9 cut(s)	49, 156, 263, 277, 295, 341, 401, 460, 523
MseI	TTAA	1 cut(s)	458
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	3 cut(s)	14, 281, 299
MvaI	CCWGG	2 cut(s)	14, 281
MwoI	GCNNNNNNNGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	2 cut(s)	58, 562
NlaIV	GGNNCC	3 cut(s)	60, 250, 278
PaqCI	CACCTGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	514
PfoI	TCCNGGA	2 cut(s)	279, 297
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	3 cut(s)	126, 171, 435
PpsI	GAGTC	3 cut(s)	126, 171, 435
Psp6I	CCWGG	2 cut(s)	12, 279
PspGI	CCWGG	2 cut(s)	12, 279
PspN4I	GGNNCC	3 cut(s)	60, 250, 278
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	2 cut(s)	58, 562
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	3 cut(s)	126, 171, 435
ScrFI	CCNGG	3 cut(s)	14, 281, 299
SduI	GDGCHC	3 cut(s)	112, 251, 390
SfaNI	GCATC	2 cut(s)	258, 486
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	3 cut(s)	20, 114, 459
SsiI	CCGC	2 cut(s)	328, 404
StyD4I	CCNGG	3 cut(s)	12, 279, 297
StyI	CCWWGG	2 cut(s)	6, 262
TaaI	ACNGT	3 cut(s)	128, 362, 427
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	106, 518
TasI	AATT	3 cut(s)	20, 114, 459
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	39, 201
TseI	GCWGC	1 cut(s)	372
TspDTI	ATGAA	3 cut(s)	146, 230, 452
TspRI	CASTG	2 cut(s)	39, 201
Tth111I	GACNNNGTC	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.