Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003872

Physical Location & Seq

Genomic Coordinates Forward (+)

15692177 .. 15694801

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0114900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTTGGTGTTTGGTTTTGTTGTTGTTGTTGTTTTTTTCTTTTTCTTTTTCTTACAGGGACTCCCGACAGTTCAACTCAAGCGGAAAAATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGACACTGGTTAAGAAGCAAAGCGCAGGAGAATTACGGCTTCATAGAGATATTAGTGAGCTGAACCTACAGAAAACATGTACCATAGCATTCCCCAATGGTAAGGACGATTTAATGAACTTTGAGGTTACCGTCCGGCCTGATGAAGGATACTATCTAGGCGGTACATTTATGTTCACATTTCAAGTTTCTCCCATGTATCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACAAAGGTCTATCATCCTAATATTGACTTGGAAGGAAACGTCTGCCTCAACATTCTAAGAGAAGACTGGAAACCTGTTTTGAATATCAATACTATAATATATGGACTCTTTCATCTTTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCTGCTGTCCTAAGGGATAACCCCAAGATGTTTGAGTCCAATGTGAGAAGAGCTATGTCTGGTGGGTATGTGGGGCAGACCTTATTCCCGCGGTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

213

Amino Acids

24.62

Weight (kDa)

8.9

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	63 - 198	2.6e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21380 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970
fragaria_vesca	FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400
malus_domestica	MD05G1008800.v1.1 MD10G1007100.v1.1 MD10G1007700.v1.1
prunus_persica	Prupe.8G010900_v2.0.a1 Prupe.8G010900_v2.0.a1
pyrus_communis	pycom05g00450 pycom10g00480
rosa_chinensis	RchiOBHm_Chr6g0278141
rosa_laevigata	RLG00000013238
rosa_multiflora	Rmu_co8265659.1_g000001 Rmu_sc0000791.1_g000057 Rmu_sc0000857.1_g000058
rosa_roxburghii	Rroxscaffold_7G00190500
rosa_rugosa	Rorug06G0114900
rosa_samantha	Rh6AG224900 Rh6BG229000 Rh6CG231500 Rh6DG222300
rosa_wichuraiana	Rw6G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccII	CGCG	1 cut(s)	631
AciI	CCGC	4 cut(s)	84, 312, 629, 631
AclWI	GGATC	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	2 cut(s)	232, 316
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	76, 335, 463
AluBI	AGCT	5 cut(s)	100, 130, 211, 542, 593
AluI	AGCT	5 cut(s)	100, 130, 211, 542, 593
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	539, 542
AspLEI	GCGC	2 cut(s)	176, 364
AxyI	CCTNAGG	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	529, 551
BceAI	ACGGC	1 cut(s)	203
BciVI	GTATCC	2 cut(s)	293, 360
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	365
BfuI	GTATCC	2 cut(s)	293, 360
BisI	GCNGC	2 cut(s)	540, 543
BlsI	GCNGC	2 cut(s)	541, 544
BmiI	GGNNCC	1 cut(s)	363
BmsI	GCATC	1 cut(s)	526
BoxI	GACNNNNGTC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	629
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	162, 452
Bse21I	CCTNAGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseNI	ACTGG	2 cut(s)	162, 452
BseXI	GCAGC	2 cut(s)	529, 551
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	4 cut(s)	84, 312, 629, 631
BspANI	GGCC	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	631
BspHI	TCATGA	2 cut(s)	355, 532
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	162, 452
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	1 cut(s)	520
BssNI	GRCGYC	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	72, 283
Bst6I	CTCTTC	1 cut(s)	583
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	437, 551
BstDSI	CCRYGG	1 cut(s)	629
BstEII	GGTNACC	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	176, 364
BstKTI	GATC	1 cut(s)	523
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 140
BstNSI	RCATGY	2 cut(s)	231, 640
BstPAI	GACNNNNGTC	1 cut(s)	386
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	2 cut(s)	529, 551
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
Bsu36I	CCTNAGG	1 cut(s)	551
BsuI	GTATCC	2 cut(s)	293, 360
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	2 cut(s)	355, 532
CfoI	GCGC	2 cut(s)	176, 364
Cfr42I	CCGCGG	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	231, 315
CviAII	CATG	5 cut(s)	228, 346, 356, 533, 637
CviJI	RGCY	7 cut(s)	100, 130, 190, 211, 289, 542, 593
CviKI_1	RGCY	7 cut(s)	100, 130, 190, 211, 289, 542, 593
CviQI	GTAC	2 cut(s)	231, 315
DdeI	CTNAG	2 cut(s)	437, 551
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
FaeI	CATG	5 cut(s)	231, 349, 359, 536, 640
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	5 cut(s)	227, 345, 355, 532, 636
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	2 cut(s)	540, 543
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	540, 543
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	175, 363
GluI	GCNGC	2 cut(s)	540, 543
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	286
HhaI	GCGC	2 cut(s)	176, 364
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	5 cut(s)	231, 349, 359, 536, 640
Hin6I	GCGC	2 cut(s)	174, 362
HinP1I	GCGC	2 cut(s)	174, 362
HinfI	GANTC	3 cut(s)	62, 486, 575
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	66, 356, 533
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	106, 290, 407
HpyCH4III	ACNGT	2 cut(s)	72, 283
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	378, 539, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 140
HpyF3I	CTNAG	2 cut(s)	437, 551
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	5 cut(s)	231, 349, 359, 536, 640
HspAI	GCGC	2 cut(s)	174, 362
KasI	GGCGCC	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	632
Kzo9I	GATC	1 cut(s)	520
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	43, 143, 162, 299, 303, 433, 468, 585
Lsp1109I	GCAGC	2 cut(s)	529, 551
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	3 cut(s)	455, 530, 600
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	2 cut(s)	182, 511
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	3 cut(s)	56, 480, 584
MnlI	CCTC	5 cut(s)	117, 268, 352, 363, 437
MseI	TTAA	5 cut(s)	96, 105, 162, 263, 528
MspA1I	CMGCKG	2 cut(s)	542, 631
MspI	CCGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	239
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	2 cut(s)	127, 140
NarI	GGCGCC	1 cut(s)	362
NdeII	GATC	1 cut(s)	520
NlaIII	CATG	5 cut(s)	231, 349, 359, 536, 640
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	2 cut(s)	231, 640
PagI	TCATGA	2 cut(s)	355, 532
PciI	ACATGT	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	541, 544
PleI	GAGTC	3 cut(s)	56, 480, 583
PluTI	GGCGCC	1 cut(s)	365
PpsI	GAGTC	3 cut(s)	56, 480, 583
PscI	ACATGT	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	386
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	232, 316
RsaNI	GTAC	2 cut(s)	231, 315
SacII	CCGCGG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	5 cut(s)	96, 105, 162, 263, 528
SatI	GCNGC	2 cut(s)	540, 543
Sau3AI	GATC	1 cut(s)	520
SchI	GAGTC	3 cut(s)	56, 480, 584
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	632
SgrBI	CCGCGG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	182, 511
SsiI	CCGC	4 cut(s)	84, 312, 629, 631
SspDI	GGCGCC	1 cut(s)	361
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	72, 283
TaiI	ACGT	1 cut(s)	423
TasI	AATT	2 cut(s)	182, 511
Tru1I	TTAA	5 cut(s)	96, 105, 162, 263, 528
Tru9I	TTAA	5 cut(s)	96, 105, 162, 263, 528
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	2 cut(s)	539, 542
TspDTI	ATGAA	5 cut(s)	182, 281, 309, 482, 531
TspRI	CASTG	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	294
XceI	RCATGY	2 cut(s)	231, 640
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.