Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

7511750 .. 7513481

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAACATCGCTCACACTATCTTCGGCGTTTTCGGAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTCAAGAGAATCATCAAGAACAAATCCACTGAACAATTCTCTGGTATCCCTTATCCAATGACTCTCCTCAACTGTCTCCTCTCTGCTTGGTATGGACTTCCCTTTGTGTCAAAAGACAACACACTTGTGAGCACAATCAATGGCACAGGAGCAGTGATCGAAACAGTCTACGTGTTAATCTTTCTTTTCTACGCACCAAAGAAGGAGAAAATTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCTGTATTCGCAACAGTAGCTCTCGTCTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTTTTGTGGTCTCGCAGCTACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGAGATTGGTGGTAAAGACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACTTCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAATCCCAAATGGGTTTGGATGTGCATTAGGGACACTGCAATTGATACTATACTTCATCTACTGTGGAAACAAAGGAGAGAAATCTGCAGATGCTCAGAAAGATGAGAAGTCAGTGGAGATGAAAGATGATGAGAAGAAGCAGAATGTGGTTAATGGAAAGCAAGACCTTCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

247

Amino Acids

27.27

Weight (kDa)

9.16

Isoelectric Point (pI)

28.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	7 - 94	9.8e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 196	2.1e-16	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	425, 520
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	82, 365, 737
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	2 cut(s)	341, 401
AluI	AGCT	2 cut(s)	341, 401
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	3 cut(s)	158, 352, 398
AlwNI	CAGNNNCTG	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	2 cut(s)	422, 449
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	158, 352, 398
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	398
BseGI	GGATG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	134, 146
BseXI	GCAGC	1 cut(s)	410
Bsh1285I	CGRYCG	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	610
BsmAI	GTCTC	3 cut(s)	158, 352, 398
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	234, 294
BspCNI	CTCAG	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	398
BssMI	GATC	2 cut(s)	234, 294
Bst4CI	ACNGT	6 cut(s)	152, 244, 337, 374, 406, 629
Bst6I	CTCTTC	2 cut(s)	366, 461
BstBAI	YACGTR	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	590
BstKTI	GATC	2 cut(s)	237, 297
BstMAI	GTCTC	3 cut(s)	158, 352, 398
BstMBI	GATC	2 cut(s)	234, 294
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstSFI	CTRYAG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	590
BtsI	GCAGTG	2 cut(s)	237, 599
BtsIMutI	CAGTG	4 cut(s)	105, 237, 599, 684
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	424, 519
CviAII	CATG	2 cut(s)	421, 445
CviJI	RGCY	4 cut(s)	65, 323, 341, 401
CviKI_1	RGCY	4 cut(s)	65, 323, 341, 401
CviQI	GTAC	2 cut(s)	424, 519
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	2 cut(s)	236, 296
DpnII	GATC	2 cut(s)	234, 294
Eam1104I	CTCTTC	2 cut(s)	366, 461
EarI	CTCTTC	2 cut(s)	366, 461
Eco31I	GGTCTC	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	424, 448
FaiI	YATR	6 cut(s)	171, 422, 446, 482, 537, 616
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	2 cut(s)	420, 444
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	424, 448
HinfI	GANTC	2 cut(s)	87, 139
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	35, 663
Hpy188III	TCNNGA	4 cut(s)	82, 94, 445, 551
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	78, 274, 743
HpyCH4III	ACNGT	6 cut(s)	152, 244, 337, 374, 406, 629
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	41, 566, 590, 604, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	424, 448
Kzo9I	GATC	2 cut(s)	234, 294
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	70, 227
LpnPI	CCDG	2 cut(s)	105, 210
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	1 cut(s)	646
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	495, 551
MalI	GATC	2 cut(s)	236, 296
MboI	GATC	2 cut(s)	234, 294
MboII	GAAGA	6 cut(s)	13, 298, 353, 478, 499, 712
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	3 cut(s)	113, 288, 605
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	155, 167, 521
MseI	TTAA	4 cut(s)	254, 291, 717, 742
MslI	CAYNNNNRTG	2 cut(s)	203, 419
MunI	CAATTG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NdeII	GATC	2 cut(s)	234, 294
NlaIII	CATG	2 cut(s)	424, 448
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	495, 551
OliI	CACNNNNGTG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	2 cut(s)	425, 520
RsaNI	GTAC	2 cut(s)	424, 519
RseI	CAYNNNNRTG	2 cut(s)	203, 419
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	254, 291, 717, 742
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	234, 294
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	4 cut(s)	252, 343, 403, 735
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	203, 419
Sse9I	AATT	3 cut(s)	113, 288, 605
TaaI	ACNGT	6 cut(s)	152, 244, 337, 374, 406, 629
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	71, 237
TaqII	GACCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	113, 288, 605
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	4 cut(s)	254, 291, 717, 742
Tru9I	TTAA	4 cut(s)	254, 291, 717, 742
TscAI	CASTG	4 cut(s)	112, 237, 606, 684
TseFI	GTSAC	2 cut(s)	495, 551
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	2 cut(s)	495, 551
TspDTI	ATGAA	3 cut(s)	17, 610, 701
TspRI	CASTG	4 cut(s)	112, 237, 606, 684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.