Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

910012 .. 911523

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACTATGCTCAACTGCCTCCTCTCCGCTTGGTATGGCCTGCCATTTGTGTCCCCAAACAACATTTTAGTGTCAACAATCAATGGTACTGGTGCAGCCATTGAACTGATATATGTGTTGATCTTCATCATTTTTGCCCCAAAGAGGGAGAGGGCCAAAATTCTTGGTCTCTTCACTGCTGTACTTGCTTTGTTCTCTGCTGTGGCATTGGTCTCTCTCTTATCCCTCCACGACAAATCCCGGAAGCTCTTCTGTGGCCTCGCCGCCACCGTGTTCTCCGTCATCATGTATAGCTCGCCGTTCTCGATTATGAGCACAGTGGTGAGAACTAAGAGTGTGGAGTTTATGCCATTTTTCTTGTCACTTTTCTCCTTCTTATGTGGAACTTCATGGTTCATCTTTGGCCTACTTGGCCATGATCCATTTGTTGCTATTCCAAATGGGTTTGGGAGTGGTTTAGGGGCACTGCAGCTGCTCCTGTACTTCATATACCGTGACAACAAGGGCAAGGGCAGTGGCACCAAGAAGCCCAATGATGCTGCAACTACTGCTGACGAATCAATGGAGATGGGCGTTGCAAAGCCCGATCAACAACCAAAGCAATCAATTACCATTAATGGCGCCCAAGATGGGCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

214

Amino Acids

23.06

Weight (kDa)

9.01

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	86 - 168	5.1e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	518, 620
AciI	CCGC	2 cut(s)	27, 264
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	3 cut(s)	88, 183, 482
AfiI	CCNNNNNNNGG	3 cut(s)	144, 145, 630
AgsI	TTSAA	1 cut(s)	104
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	247, 294, 472
AluI	AGCT	3 cut(s)	247, 294, 472
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	173, 217
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	5 cut(s)	37, 153, 256, 403, 412
ApeKI	GCWGC	4 cut(s)	95, 469, 472, 539
ApoI	RAATTY	1 cut(s)	159
AseI	ATTAAT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	466
BalI	TGGCCA	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	518, 620
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	107, 459, 481, 526
BccI	CCATC	2 cut(s)	562, 623
BceAI	ACGGC	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	173, 217
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	5 cut(s)	96, 264, 470, 473, 540
BlsI	GCNGC	5 cut(s)	97, 265, 471, 474, 541
Bme1390I	CCNGG	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	520, 622
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	2 cut(s)	173, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 145, 630
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	125
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	144, 145, 630
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	107, 459, 481, 526
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	5 cut(s)	39, 155, 258, 405, 414
BshNI	GGYRCC	2 cut(s)	518, 620
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	144, 145, 630
BsmAI	GTCTC	2 cut(s)	173, 217
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	5 cut(s)	39, 155, 258, 405, 414
Bso31I	GGTCTC	2 cut(s)	173, 217
Bsp1286I	GDGCHC	2 cut(s)	317, 466
Bsp143I	GATC	3 cut(s)	120, 418, 586
BspACI	CCGC	2 cut(s)	27, 264
BspANI	GGCC	5 cut(s)	39, 155, 258, 405, 414
BspLI	GGNNCC	2 cut(s)	520, 622
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	518, 620
BspTNI	GGTCTC	2 cut(s)	173, 217
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	120, 418, 586
BssNI	GRCGYC	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	271, 319, 494
Bst6I	CTCTTC	2 cut(s)	176, 254
BstACI	GRCGYC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	41, 296
BstDEI	CTNAG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	3 cut(s)	123, 421, 589
BstMAI	GTCTC	2 cut(s)	173, 217
BstMBI	GATC	3 cut(s)	120, 418, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 411, 548
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	4 cut(s)	107, 459, 481, 526
BsuRI	GGCC	5 cut(s)	39, 155, 258, 405, 414
BtsI	GCAGTG	3 cut(s)	174, 464, 520
BtsIMutI	CAGTG	4 cut(s)	174, 324, 464, 520
Cac8I	GCNNGC	2 cut(s)	41, 296
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	87, 182, 481
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	4 cut(s)	286, 390, 416, 635
CviQI	GTAC	3 cut(s)	87, 182, 481
DdeI	CTNAG	1 cut(s)	330
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	3 cut(s)	122, 420, 588
DpnII	GATC	3 cut(s)	120, 418, 586
EaeI	YGGCCR	1 cut(s)	412
Eam1104I	CTCTTC	2 cut(s)	176, 254
EarI	CTCTTC	2 cut(s)	176, 254
Eco31I	GGTCTC	2 cut(s)	173, 217
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
FaeI	CATG	4 cut(s)	289, 393, 419, 638
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	285, 389, 415, 634
Fnu4HI	GCNGC	5 cut(s)	96, 264, 470, 473, 540
Fsp4HI	GCNGC	5 cut(s)	96, 264, 470, 473, 540
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	5 cut(s)	96, 264, 470, 473, 540
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	5 cut(s)	39, 155, 258, 405, 414
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	289, 393, 419, 638
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	3 cut(s)	271, 319, 494
HpyCH4V	TGCA	4 cut(s)	95, 469, 542, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 411, 548
HpyF3I	CTNAG	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	289, 393, 419, 638
HspAI	GCGC	1 cut(s)	621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	3 cut(s)	120, 418, 586
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	4 cut(s)	53, 75, 254, 491
Lsp1109I	GCAGC	4 cut(s)	107, 459, 481, 526
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	360, 494
MalI	GATC	3 cut(s)	122, 420, 588
MboI	GATC	3 cut(s)	120, 418, 586
MboII	GAAGA	3 cut(s)	115, 163, 241
MhlI	GDGCHC	2 cut(s)	317, 466
MlsI	TGGCCA	1 cut(s)	414
MluCI	AATT	2 cut(s)	159, 606
MluNI	TGGCCA	1 cut(s)	414
Mly113I	GGCGCC	1 cut(s)	621
MnlI	CCTC	6 cut(s)	29, 32, 138, 144, 236, 269
Mox20I	TGGCCA	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	414
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	2 cut(s)	68, 320
Msp20I	TGGCCA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	185, 411, 548
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	120, 418, 586
NlaIII	CATG	4 cut(s)	289, 393, 419, 638
NlaIV	GGNNCC	2 cut(s)	520, 622
NmuCI	GTSAC	2 cut(s)	360, 494
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 302
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	97, 265, 471, 474, 541
PluTI	GGCGCC	1 cut(s)	624
PshBI	ATTAAT	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	520, 622
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	471
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	3 cut(s)	88, 183, 482
RsaNI	GTAC	3 cut(s)	87, 182, 481
RseI	CAYNNNNRTG	2 cut(s)	68, 320
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	5 cut(s)	96, 264, 470, 473, 540
Sau3AI	GATC	3 cut(s)	120, 418, 586
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	317, 466
SetI	ASST	3 cut(s)	249, 296, 474
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	467
SfiI	GGCCNNNNNGGCC	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	2 cut(s)	68, 320
Sse9I	AATT	2 cut(s)	159, 606
SsiI	CCGC	2 cut(s)	27, 264
SspDI	GGCGCC	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	3 cut(s)	271, 319, 494
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	159, 606
TatI	WGTACW	2 cut(s)	181, 480
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	4 cut(s)	181, 324, 471, 520
TseFI	GTSAC	2 cut(s)	360, 494
TseI	GCWGC	4 cut(s)	95, 469, 472, 539
Tsp45I	GTSAC	2 cut(s)	360, 494
TspDTI	ATGAA	4 cut(s)	115, 378, 385, 475
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	4 cut(s)	181, 324, 471, 520
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.