Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1630354 .. 1632521

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCATATTCTCAAGGTCTTCTTTGGAGTTGTTGGAAATGCCACTGCTCTGTTCCTCTTCTTGGCTCCCATCATCACATTCAAGAGGATCATACAGAAGAGAAGCACAGAGCAGTTCTCAGGCATTCCGTATGTCATGACAATGCTCAACTGCCTCCTCTCCGCTTGGTATGGCCTGCCCTTTGTGTCCCCAAACAACATCTTGGTCTCAACCATCAATGGTACTGGTGCAGCCATTGAAGCAATATATGTGTTGATCTTCATCATATTTGCCCCCAAGAGAGAGAAGTTCAAGATTCTTGGCCTCTTCACCATTGTGCTTGCTATCTTCTCCACTGTGGCTTTGGTCTCAGTCTTTGCTCTGCACAGCAAGGCCAGGAAGCTCTTCTGTGGGCTTGCAGCCACCGTATTCTCAATCATCATGTATGGCTCGCCTCTCGCAATTATGAGCACAGTGATCAGAACCAAGAGCGTGGAATTTATGCCATTTTTTTTGTCACTTTTCTCCTTCTTATGTGGCACTTCATGGTTCATCTTTGGCCTACTTGGCCATGACCCTTTTGTTGCTGTGCCAAATGGATTTGGAAGCGGCCTAGGGGCACTGCAGCTGGTCTTGTACTTCATCTACCGTGACAGCAGCAAGGGAAGCACAGGCAGTATCAAGAAGGCCAGTTCTAGTAGTACTGCTGCTACTGCTGATGAATCAATGGAGATGGGCGTTGCAAAGCCCCACCAATCAAAGCAATCAATGGCCATCAGTGGTGCTCAAGACGGGCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

261

Amino Acids

28.12

Weight (kDa)

9.68

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 588
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	547, 750
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	3 cut(s)	223, 617, 682
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	82, 239, 292
AjnI	CCWGG	1 cut(s)	374
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	382, 607
AluI	AGCT	2 cut(s)	382, 607
Alw21I	GWGCWC	2 cut(s)	452, 766
Alw26I	GTCTC	2 cut(s)	211, 352
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	8 cut(s)	172, 301, 372, 538, 547, 589, 666, 750
ApeKI	GCWGC	6 cut(s)	230, 398, 604, 636, 686, 775
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	2 cut(s)	549, 752
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	452, 766
BbvI	GCAGC	5 cut(s)	242, 410, 616, 648, 673
BccI	CCATC	4 cut(s)	77, 221, 706, 761
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	211, 352
BfaI	CTAG	3 cut(s)	593, 675, 781
BfmI	CTRYAG	1 cut(s)	602
BglI	GCCNNNNNGGC	1 cut(s)	546
BisI	GCNGC	7 cut(s)	231, 399, 589, 605, 637, 687, 776
BlnI	CCTAGG	1 cut(s)	592
BlsI	GCNGC	7 cut(s)	232, 400, 590, 606, 638, 688, 777
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpuEI	CTTGAG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	211, 352
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	229, 669
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	132, 363
BseNI	ACTGG	2 cut(s)	229, 669
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	5 cut(s)	242, 410, 616, 648, 673
BsgI	GTGCAG	2 cut(s)	249, 347
BshFI	GGCC	8 cut(s)	174, 303, 374, 540, 549, 591, 668, 752
BsiHKAI	GWGCWC	2 cut(s)	452, 766
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	211, 352
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	8 cut(s)	174, 303, 374, 540, 549, 591, 668, 752
Bso31I	GGTCTC	2 cut(s)	211, 352
Bsp1286I	GDGCHC	3 cut(s)	452, 601, 766
Bsp143I	GATC	3 cut(s)	87, 255, 456
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	8 cut(s)	174, 303, 374, 540, 549, 591, 668, 752
BspCNI	CTCAG	2 cut(s)	131, 362
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	211, 352
BsrI	ACTGG	2 cut(s)	229, 669
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	3 cut(s)	87, 255, 456
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	4 cut(s)	337, 406, 454, 629
Bst6I	CTCTTC	4 cut(s)	62, 92, 311, 389
BstC8I	GCNNGC	4 cut(s)	176, 321, 396, 431
BstDEI	CTNAG	2 cut(s)	118, 349
BstKTI	GATC	3 cut(s)	90, 258, 459
BstMAI	GTCTC	2 cut(s)	211, 352
BstMBI	GATC	3 cut(s)	87, 255, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 546, 645, 692
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	5 cut(s)	242, 410, 616, 648, 673
BstV2I	GAAGAC	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	8 cut(s)	174, 303, 374, 540, 549, 591, 668, 752
BtsI	GCAGTG	2 cut(s)	42, 599
BtsIMutI	CAGTG	5 cut(s)	42, 333, 459, 599, 763
Cac8I	GCNNGC	4 cut(s)	176, 321, 396, 431
CciI	TCATGA	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	222, 616, 681
CviAII	CATG	4 cut(s)	136, 421, 525, 551
CviQI	GTAC	3 cut(s)	222, 616, 681
DdeI	CTNAG	2 cut(s)	118, 349
DpnI	GATC	3 cut(s)	89, 257, 458
DpnII	GATC	3 cut(s)	87, 255, 456
EaeI	YGGCCR	2 cut(s)	547, 750
Eam1104I	CTCTTC	4 cut(s)	62, 92, 311, 389
EarI	CTCTTC	4 cut(s)	62, 92, 311, 389
Eco130I	CCWWGG	1 cut(s)	592
Eco31I	GGTCTC	2 cut(s)	211, 352
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	4 cut(s)	139, 424, 528, 554
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	4 cut(s)	135, 420, 524, 550
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	7 cut(s)	231, 399, 589, 605, 637, 687, 776
Fsp4HI	GCNGC	7 cut(s)	231, 399, 589, 605, 637, 687, 776
FspBI	CTAG	3 cut(s)	593, 675, 781
GluI	GCNGC	7 cut(s)	231, 399, 589, 605, 637, 687, 776
HaeIII	GGCC	8 cut(s)	174, 303, 374, 540, 549, 591, 668, 752
Hin1II	CATG	4 cut(s)	139, 424, 528, 554
HinfI	GANTC	2 cut(s)	295, 701
HphI	GGTGA	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	5 cut(s)	82, 136, 292, 661, 767
HpyAV	CCTTC	2 cut(s)	517, 658
HpyCH4III	ACNGT	4 cut(s)	337, 406, 454, 629
HpyCH4V	TGCA	6 cut(s)	4, 230, 364, 398, 604, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 546, 645, 692
HpyF3I	CTNAG	2 cut(s)	118, 349
Hsp92II	CATG	4 cut(s)	139, 424, 528, 554
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	87, 255, 456
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	105, 188, 210, 361, 388, 593, 636, 682
Lsp1109I	GCAGC	5 cut(s)	242, 410, 616, 648, 673
MaeI	CTAG	3 cut(s)	593, 675, 781
MaeIII	GTNAC	2 cut(s)	495, 629
MalI	GATC	3 cut(s)	89, 257, 458
MboI	GATC	3 cut(s)	87, 255, 456
MboII	GAAGA	7 cut(s)	10, 49, 109, 250, 298, 319, 376
MhlI	GDGCHC	3 cut(s)	452, 601, 766
MlsI	TGGCCA	2 cut(s)	549, 752
MluCI	AATT	2 cut(s)	441, 476
MluNI	TGGCCA	2 cut(s)	549, 752
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	65, 78, 164, 167, 314, 444
Mox20I	TGGCCA	2 cut(s)	549, 752
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	2 cut(s)	549, 752
MslI	CAYNNNNRTG	2 cut(s)	140, 314
Msp20I	TGGCCA	2 cut(s)	549, 752
MspA1I	CMGCKG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	4 cut(s)	239, 546, 645, 692
NdeII	GATC	3 cut(s)	87, 255, 456
NlaIII	CATG	4 cut(s)	139, 424, 528, 554
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	495, 629
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	314
PagI	TCATGA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	295, 701
PkrI	GCNGC	7 cut(s)	232, 400, 590, 606, 638, 688, 777
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	3 cut(s)	223, 617, 682
RsaNI	GTAC	3 cut(s)	222, 616, 681
RseI	CAYNNNNRTG	2 cut(s)	140, 314
SapI	GCTCTTC	1 cut(s)	389
SatI	GCNGC	7 cut(s)	231, 399, 589, 605, 637, 687, 776
Sau3AI	GATC	3 cut(s)	87, 255, 456
ScaI	AGTACT	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	3 cut(s)	452, 601, 766
SetI	ASST	3 cut(s)	18, 384, 609
SfcI	CTRYAG	1 cut(s)	602
SfiI	GGCCNNNNNGGCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	2 cut(s)	140, 314
SmlI	CTYRAG	2 cut(s)	11, 765
SmoI	CTYRAG	2 cut(s)	11, 765
Sse9I	AATT	2 cut(s)	441, 476
SsiI	CCGC	2 cut(s)	162, 588
SspMI	CTAG	3 cut(s)	593, 675, 781
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	4 cut(s)	337, 406, 454, 629
TasI	AATT	2 cut(s)	441, 476
TatI	WGTACW	2 cut(s)	615, 680
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	2 cut(s)	295, 701
TscAI	CASTG	5 cut(s)	49, 340, 459, 606, 763
TseFI	GTSAC	2 cut(s)	495, 629
TseI	GCWGC	6 cut(s)	230, 398, 604, 636, 686, 775
Tsp45I	GTSAC	2 cut(s)	495, 629
TspDTI	ATGAA	5 cut(s)	250, 513, 520, 610, 714
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	5 cut(s)	49, 340, 459, 606, 763
XapI	RAATTY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	592
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	3 cut(s)	593, 675, 781
ZrmI	AGTACT	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.