Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

2448222 .. 2451303

Gene Structure 3082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1012200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATCCAAAAACAATGCATGTTTTCAAGGTTTTTTTCGGAGTCATTGGAAATGGCACTGCTCTCTTCCTCTTCTTGGCACCCACAATTACATTTAGGAGGATCATAAGGAAAAGAAGCACGGAGCAGTTCTCGGGCATCCCCTACGTGATGACTATGCTCAACTGCCTCCTCTCCGCTTGGTATGGCCTGCCATTTGTGTCCCCAAACAACATTTTAGTGTCAACAATCAATGGTACTGGTGCAGCCATTGAACTGATATATGTGTTGATCTTCATCATTTTTGCCCCAAAGAGGGAGAGGGCCAAAATTCTTGGTCTCTTCACTGCTGTGCTTGCTTTGTTCTCTGCTGTGGCATTGGTATCTCTCTTTACCCTCCACGACAAAACCCGGAAGCTCTTCTGTGGCCTCGCTGCCACCGTGTTCTCCGTCATCATGTATAGCTCGCCTTTCTCGATTATGAGCACAGTGGTGAGAACTAAGAGTGTGGAGTTTATGCCATTTTTCTTGTCACTTTTCTCCTTCTTATGTGGAACTTCATGGTTCATCTTTGGCCTACTTGGCCATGATCCATTTGTTGCTATTCCAAATGGGTTTGGGAGTGGTTTAGGGGCACTGCAGCTGCTCCTGTACTTCATCTACCGTGACAACAAGGGCAAGGGCAGTGGCACCAAGAAGCCCAATGGTGCTGCAACTACTGCTGACGAATCAATGGAGATGGGCGTTGCAAAGCCTGATCAACAACCAAAGCAATCAATTACCATTAATGGCGCCCAAGATGGGCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

264

Amino Acids

28.8

Weight (kDa)

9.68

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 99	1.5e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	136 - 218	8e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	79, 668, 770
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	3 cut(s)	12, 110, 563
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	2 cut(s)	238, 632
AfiI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
AgsI	TTSAA	2 cut(s)	28, 254
AleI	CACNNNNGTG	2 cut(s)	329, 470
AluBI	AGCT	3 cut(s)	397, 444, 622
AluI	AGCT	3 cut(s)	397, 444, 622
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	12, 110, 563
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	5 cut(s)	187, 303, 406, 553, 562
ApeKI	GCWGC	5 cut(s)	245, 413, 619, 622, 689
ApoI	RAATTY	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	79, 668, 770
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	257, 400, 609, 631, 676
BccI	CCATC	2 cut(s)	712, 773
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	561
BisI	GCNGC	5 cut(s)	246, 414, 620, 623, 690
BlsI	GCNGC	5 cut(s)	247, 415, 621, 624, 691
Bme1390I	CCNGG	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	4 cut(s)	6, 81, 670, 772
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpuMI	CCSGG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	275
BseGI	GGATG	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	257, 400, 609, 631, 676
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	5 cut(s)	189, 305, 408, 555, 564
BshNI	GGYRCC	3 cut(s)	79, 668, 770
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	5 cut(s)	189, 305, 408, 555, 564
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	467, 616
Bsp143I	GATC	5 cut(s)	4, 102, 270, 568, 736
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	5 cut(s)	189, 305, 408, 555, 564
BspLI	GGNNCC	4 cut(s)	6, 81, 670, 772
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	3 cut(s)	12, 110, 563
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	3 cut(s)	79, 668, 770
BspTNI	GGTCTC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	5 cut(s)	4, 102, 270, 568, 736
BssNI	GRCGYC	1 cut(s)	771
Bst4CI	ACNGT	3 cut(s)	421, 469, 644
Bst6I	CTCTTC	4 cut(s)	71, 77, 326, 404
BstACI	GRCGYC	1 cut(s)	771
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	191, 336, 446
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	5 cut(s)	7, 105, 273, 571, 739
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	5 cut(s)	4, 102, 270, 568, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
BstNSI	RCATGY	2 cut(s)	23, 788
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	5 cut(s)	257, 400, 609, 631, 676
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	5 cut(s)	189, 305, 408, 555, 564
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	4 cut(s)	57, 324, 614, 670
BtsIMutI	CAGTG	5 cut(s)	57, 324, 474, 614, 670
Cac8I	GCNNGC	3 cut(s)	191, 336, 446
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	237, 631
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	5 cut(s)	20, 436, 540, 566, 785
CviQI	GTAC	2 cut(s)	237, 631
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	772
DpnI	GATC	5 cut(s)	6, 104, 272, 570, 738
DpnII	GATC	5 cut(s)	4, 102, 270, 568, 736
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	71, 77, 326, 404
EarI	CTCTTC	4 cut(s)	71, 77, 326, 404
Eco31I	GGTCTC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	772
EheI	GGCGCC	1 cut(s)	772
FaeI	CATG	5 cut(s)	23, 439, 543, 569, 788
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	5 cut(s)	19, 435, 539, 565, 784
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	5 cut(s)	246, 414, 620, 623, 690
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	5 cut(s)	246, 414, 620, 623, 690
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	246, 414, 620, 623, 690
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	5 cut(s)	189, 305, 408, 555, 564
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	5 cut(s)	23, 439, 543, 569, 788
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	42, 707
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	3 cut(s)	421, 469, 644
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	19, 245, 619, 692, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	23, 439, 543, 569, 788
HspAI	GCGC	1 cut(s)	771
KasI	GGCGCC	1 cut(s)	770
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	4, 102, 270, 568, 736
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	2 cut(s)	124, 630
LpnPI	CCDG	5 cut(s)	203, 225, 404, 641, 747
Lsp1109I	GCAGC	5 cut(s)	257, 400, 609, 631, 676
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	510, 644
MalI	GATC	5 cut(s)	6, 104, 272, 570, 738
MboI	GATC	5 cut(s)	4, 102, 270, 568, 736
MboII	GAAGA	5 cut(s)	58, 64, 265, 313, 391
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	467, 616
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	3 cut(s)	87, 309, 756
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	80, 93, 179, 182, 288, 294, 386, 419
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	3 cut(s)	218, 329, 470
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
NarI	GGCGCC	1 cut(s)	771
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	4, 102, 270, 568, 736
NlaIII	CATG	5 cut(s)	23, 439, 543, 569, 788
NlaIV	GGNNCC	4 cut(s)	6, 81, 670, 772
NmuCI	GTSAC	2 cut(s)	510, 644
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 788
OliI	CACNNNNGTG	2 cut(s)	329, 470
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 452
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	5 cut(s)	247, 415, 621, 624, 691
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	765
PspN4I	GGNNCC	4 cut(s)	6, 81, 670, 772
PspPI	GGNCC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	238, 632
RsaNI	GTAC	2 cut(s)	237, 631
RseI	CAYNNNNRTG	3 cut(s)	218, 329, 470
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	5 cut(s)	246, 414, 620, 623, 690
Sau3AI	GATC	5 cut(s)	4, 102, 270, 568, 736
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	467, 616
SetI	ASST	5 cut(s)	33, 150, 399, 446, 624
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	617
SfiI	GGCCNNNNNGGCC	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	3 cut(s)	218, 329, 470
Sse9I	AATT	3 cut(s)	87, 309, 756
SsiI	CCGC	1 cut(s)	177
SspDI	GGCGCC	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	3 cut(s)	421, 469, 644
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	455
TasI	AATT	3 cut(s)	87, 309, 756
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	5 cut(s)	64, 331, 474, 621, 670
TseFI	GTSAC	2 cut(s)	510, 644
TseI	GCWGC	5 cut(s)	245, 413, 619, 622, 689
Tsp45I	GTSAC	2 cut(s)	510, 644
TspDTI	ATGAA	4 cut(s)	265, 528, 535, 625
TspGWI	ACGGA	2 cut(s)	137, 418
TspRI	CASTG	5 cut(s)	64, 331, 474, 621, 670
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	23, 788
XmnI	GAANNNNTTC	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.