Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Forward (+)

13041007 .. 13042951

Gene Structure 1945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGACGTCGTCAAGTTCTTGTTCGGCATCTTCGGTAATGCCACCGCTCTCTTCCTCTTCTTGTCGCCGACGATCACATTCAAGAGAATCGTCAAGAACAGATCCACCGAGCAGTTCTCCGGCATTCCTTACGTCATGACTCTCCTCAACTGCCTCCTCTCCGCTTGGTACGGCTTGCCGTTTGTGTCGCCGAACAACATTCTGGTGAGCACCATTAACGGCACCGGCGCTGTAATCGAGTCCGTCTACGTGTTGATCTTCATAGCCTTTGCTCCGAAGAAAGAGAAGGCCAAGATTCTGGGGCTCTTCACTTTTGTGCTGGCGGTCTTCTCCATCGTGGCTTTGGTTTCCGTTTTTGCCCTTCACGGCAACTCCAGGAAGCTCTTCTGCGGTTTCGCCGCCGCCATCTTCTCCATCGTCATGTACGGCTCGCCTCTCTCCATCATGAGGACTGTGGTGAAAACGAAGAGTGTGGAGTTCATGCCATTCTTCATGTCGCTGTTTGTGTTCTTGTGTGGCACTTCCTGGTTCGTCTATGGGCTTCTCGGCCATGACCCATTTGTAGCTGTGCCAAATGGGTTTGGGTGTGCTTTGGGGGCATTGCAGCTCATCTTGTACTTCTTCTACCGTGACATCAAGAAGCAGCAGCCTAGTGCTGAAGACAGTGTGGAGCTGGGACTCGAAAAGCCTCACCAATCGAAGCAAGCAAACGGCGTTAATGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

244

Amino Acids

26.75

Weight (kDa)

9.28

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	8 - 95	8.3e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	132 - 212	9.7e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	6 cut(s)	48, 165, 326, 393, 402, 405
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	173, 428, 620
AfiI	CCNNNNNNNGG	1 cut(s)	450
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	377, 527
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	385, 569, 610, 676
AluI	AGCT	4 cut(s)	385, 569, 610, 676
Alw21I	GWGCWC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	2 cut(s)	291, 550
ApeKI	GCWGC	3 cut(s)	607, 646, 649
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	220, 472, 686
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	3 cut(s)	12, 322, 669
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	619, 658, 661
BccI	CCATC	4 cut(s)	344, 416, 425, 452
BceAI	ACGGC	6 cut(s)	166, 190, 238, 385, 445, 730
BciT130I	CCWGG	2 cut(s)	379, 529
BfaI	CTAG	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	5 cut(s)	402, 405, 608, 647, 650
BlsI	GCNGC	5 cut(s)	403, 406, 609, 648, 651
Bme1390I	CCNGG	2 cut(s)	379, 529
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	379, 529
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	3 cut(s)	12, 322, 669
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	450
Bse118I	RCCGGY	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	379, 529
BseLI	CCNNNNNNNGG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	602
BseRI	GAGGAG	2 cut(s)	137, 149
BseXI	GCAGC	3 cut(s)	619, 658, 661
BseYI	CCCAGC	1 cut(s)	676
BshFI	GGCC	2 cut(s)	293, 552
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	123, 228
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	293, 552
Bsp1286I	GDGCHC	2 cut(s)	215, 309
Bsp143I	GATC	3 cut(s)	75, 104, 258
BspACI	CCGC	6 cut(s)	48, 165, 326, 393, 402, 405
BspANI	GGCC	2 cut(s)	293, 552
BspHI	TCATGA	2 cut(s)	138, 447
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	99
BspQI	GCTCTTC	2 cut(s)	314, 392
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	3 cut(s)	75, 104, 258
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	379, 529
Bst4CI	ACNGT	3 cut(s)	457, 632, 668
Bst6I	CTCTTC	5 cut(s)	59, 65, 314, 392, 464
BstACI	GRCGYC	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	179, 324, 434, 708
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	78, 107, 261
BstMBI	GATC	3 cut(s)	75, 104, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	379, 529
BstSCI	CCNGG	2 cut(s)	377, 527
BstV1I	GCAGC	3 cut(s)	619, 658, 661
BstV2I	GAAGAC	3 cut(s)	12, 322, 669
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	293, 552
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	4 cut(s)	179, 324, 434, 708
CciI	TCATGA	2 cut(s)	138, 447
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	172, 427, 619
CviAII	CATG	6 cut(s)	139, 424, 448, 484, 496, 554
CviQI	GTAC	3 cut(s)	172, 427, 619
DpnI	GATC	3 cut(s)	77, 106, 260
DpnII	GATC	3 cut(s)	75, 104, 258
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	5 cut(s)	59, 65, 314, 392, 464
EarI	CTCTTC	5 cut(s)	59, 65, 314, 392, 464
Eco24I	GRGCYC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	377, 527
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	6 cut(s)	142, 427, 451, 487, 499, 557
FaiI	YATR	8 cut(s)	140, 266, 425, 449, 485, 497, 540, 555
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	6 cut(s)	138, 423, 447, 483, 495, 553
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	5 cut(s)	402, 405, 608, 647, 650
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	402, 405, 608, 647, 650
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	5 cut(s)	402, 405, 608, 647, 650
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	293, 552
HapII	CCGG	2 cut(s)	123, 228
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	6 cut(s)	142, 427, 451, 487, 499, 557
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	5 cut(s)	90, 142, 242, 298, 681
HpaII	CCGG	2 cut(s)	123, 228
HphI	GGTGA	3 cut(s)	220, 472, 686
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	5 cut(s)	85, 97, 139, 448, 640
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	14, 76
HpyAV	CCTTC	2 cut(s)	283, 374
HpyCH4III	ACNGT	3 cut(s)	457, 632, 668
HpyCH4IV	ACGT	3 cut(s)	9, 135, 252
HpyCH4V	TGCA	1 cut(s)	607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpySE526I	ACGT	3 cut(s)	9, 135, 252
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	6 cut(s)	142, 427, 451, 487, 499, 557
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	75, 104, 258
LguI	GCTCTTC	2 cut(s)	314, 392
LmnI	GCTCC	2 cut(s)	280, 673
Lsp1109I	GCAGC	3 cut(s)	619, 658, 661
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	3 cut(s)	9, 135, 252
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	3 cut(s)	77, 106, 260
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	3 cut(s)	75, 104, 258
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	215, 309
MlyI	GAGTC	3 cut(s)	136, 251, 675
MnlI	CCTC	7 cut(s)	68, 158, 167, 170, 444, 447, 702
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	2 cut(s)	219, 720
MslI	CAYNNNNRTG	3 cut(s)	206, 317, 422
MspI	CCGG	2 cut(s)	123, 228
MspR9I	CCNGG	2 cut(s)	379, 529
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	2 cut(s)	379, 529
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	3 cut(s)	75, 104, 258
NlaIII	CATG	6 cut(s)	142, 427, 451, 487, 499, 557
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	632
OliI	CACNNNNGTG	1 cut(s)	317
PagI	TCATGA	2 cut(s)	138, 447
PciSI	GCTCTTC	2 cut(s)	314, 392
PctI	GAATGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	90, 298
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	403, 406, 609, 648, 651
PleI	GAGTC	3 cut(s)	136, 250, 675
PpsI	GAGTC	3 cut(s)	136, 250, 675
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	377, 527
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	2 cut(s)	377, 527
PspN4I	GGNNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	3 cut(s)	173, 428, 620
RsaNI	GTAC	3 cut(s)	172, 427, 619
RseI	CAYNNNNRTG	3 cut(s)	206, 317, 422
SapI	GCTCTTC	2 cut(s)	314, 392
SaqAI	TTAA	2 cut(s)	219, 720
SatI	GCNGC	5 cut(s)	402, 405, 608, 647, 650
Sau3AI	GATC	3 cut(s)	75, 104, 258
SchI	GAGTC	3 cut(s)	136, 251, 675
ScrFI	CCNGG	2 cut(s)	379, 529
SduI	GDGCHC	2 cut(s)	215, 309
SetI	ASST	7 cut(s)	12, 138, 255, 387, 571, 612, 678
SfaNI	GCATC	1 cut(s)	39
SgrAI	CRCCGGYG	1 cut(s)	227
SmiMI	CAYNNNNRTG	3 cut(s)	206, 317, 422
SsiI	CCGC	6 cut(s)	48, 165, 326, 393, 402, 405
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	377, 527
TaaI	ACNGT	3 cut(s)	457, 632, 668
TaiI	ACGT	3 cut(s)	12, 138, 255
TaqI	TCGA	3 cut(s)	240, 684, 701
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	2 cut(s)	404, 407
TfiI	GAWTC	2 cut(s)	90, 298
Tru1I	TTAA	2 cut(s)	219, 720
Tru9I	TTAA	2 cut(s)	219, 720
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	3 cut(s)	607, 646, 649
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	253, 472, 484
TspGWI	ACGGA	2 cut(s)	235, 343
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	654
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.