Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1754882 .. 1757564

Gene Structure 2683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1013100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATCAAAAAACAGTGCATGTTTTCAAGGTTTTGTTCGGAGTCTTAGGAAATGGCACCGCTTTCTTCCTCTTCTTGTCACCCACAATTACATTTAAGAGGATCATGAGGAAGAAATGCACAGAGCAGTTCTCAGGCATTCCCTACGTGATGACTATGCTCAACTGCCTCCTCTACGCTTGGTATGGGCTGCCATTTGTGTCCGCGAACAACTTTCTGGTGTCAACAGTCAATGGGACTGGTGCAGCCATGGAACTCATATATGTGTTGGTCTTCATCATTTTCGCCCCCAAAAGGGAGAGAGCCAAAATTCTTGGTCTCTTCACTGCTGTGCTTGCTCTGTTCTCTGCTGTGGCATTGGTCTCTCTTTTTGCCCTCCACGACAAGACCCGGAAACTCTTCTGTGGCCTCGCTGCTACCGTCTTCGCGATCATCATGTTCAGCTCTCCTTTGTCGATTATGAGCACAGTGGTGAGAACTAAGAGTGTTGAGTTTATGCCATTTTTCTTGTCACTTTTCTCCTTCTTGTGTGGAACTTCATGGTTTATCTATGGCCTGCTTGGCCGTGATCCATTTGTTGCTATTCCAAATGGGTGTGGGAGTGTCTTAGGGGCACTGCAGCTGATCCTGTACTTCATCTACCGTGACAACAAGGGCAAGGGCAGTGGCACCACGAAGCCCAATGGTGCTGCAACTACTGCTGACGAATCAATTACCATTAATGGCGCCCAAGATGGGCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

249

Amino Acids

27.13

Weight (kDa)

9.54

Isoelectric Point (pI)

20.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 99	9e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	136 - 218	2.2e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	56, 668, 725
AccII	CGCG	2 cut(s)	206, 428
AciI	CCGC	2 cut(s)	60, 204
AclWI	GGATC	4 cut(s)	12, 110, 563, 619
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	3 cut(s)	294, 295, 735
AgsI	TTSAA	1 cut(s)	28
AleI	CACNNNNGTG	2 cut(s)	329, 470
AluBI	AGCT	2 cut(s)	444, 622
AluI	AGCT	2 cut(s)	444, 622
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	323, 367
AlwI	GGATC	4 cut(s)	12, 110, 563, 619
AoxI	GGCC	3 cut(s)	406, 553, 562
ApeKI	GCWGC	5 cut(s)	190, 245, 413, 619, 689
ApoI	RAATTY	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	72, 484
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	3 cut(s)	56, 668, 725
BbsI	GAAGAC	2 cut(s)	265, 415
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	323, 367
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	729
BglI	GCCNNNNNGGC	1 cut(s)	561
BisI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
BlsI	GCNGC	5 cut(s)	192, 247, 415, 621, 691
Bme1390I	CCNGG	1 cut(s)	391
BmiI	GGNNCC	3 cut(s)	58, 670, 727
BmrFI	CCNGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	265, 415
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpuMI	CCSGG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	726
BsaI	GGTCTC	2 cut(s)	323, 367
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 295, 735
Bse1I	ACTGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	294, 295, 735
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	206, 428
BshFI	GGCC	3 cut(s)	408, 555, 564
BshNI	GGYRCC	3 cut(s)	56, 668, 725
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	294, 295, 735
BsmAI	GTCTC	2 cut(s)	323, 367
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	408, 555, 564
Bso31I	GGTCTC	2 cut(s)	323, 367
Bsp1286I	GDGCHC	2 cut(s)	467, 616
Bsp143I	GATC	5 cut(s)	4, 102, 429, 568, 624
Bsp19I	CCATGG	1 cut(s)	249
Bsp68I	TCGCGA	1 cut(s)	428
BspACI	CCGC	2 cut(s)	60, 204
BspANI	GGCC	3 cut(s)	408, 555, 564
BspCNI	CTCAG	1 cut(s)	146
BspFNI	CGCG	2 cut(s)	206, 428
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	58, 670, 727
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	4 cut(s)	12, 110, 563, 619
BspT107I	GGYRCC	3 cut(s)	56, 668, 725
BspTNI	GGTCTC	2 cut(s)	323, 367
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	4, 102, 429, 568, 624
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	5 cut(s)	16, 229, 421, 469, 644
Bst6I	CTCTTC	3 cut(s)	77, 326, 404
BstACI	GRCGYC	1 cut(s)	726
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	336, 557
BstDEI	CTNAG	4 cut(s)	46, 133, 480, 607
BstDSI	CCRYGG	1 cut(s)	249
BstFNI	CGCG	2 cut(s)	206, 428
BstH2I	RGCGCY	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	5 cut(s)	7, 105, 432, 571, 627
BstMAI	GTCTC	2 cut(s)	323, 367
BstMBI	GATC	5 cut(s)	4, 102, 429, 568, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
BstNSI	RCATGY	2 cut(s)	23, 743
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	2 cut(s)	206, 428
BstV1I	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BstV2I	GAAGAC	2 cut(s)	265, 415
BsuRI	GGCC	3 cut(s)	408, 555, 564
BtgI	CCRYGG	1 cut(s)	249
BtsI	GCAGTG	3 cut(s)	324, 614, 670
BtsIMutI	CAGTG	5 cut(s)	21, 324, 474, 614, 670
BtuMI	TCGCGA	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	336, 557
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	631
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	6 cut(s)	20, 106, 250, 436, 540, 740
CviJI	RGCY	9 cut(s)	190, 248, 305, 408, 444, 555, 564, 622, 679
CviKI_1	RGCY	9 cut(s)	190, 248, 305, 408, 444, 555, 564, 622, 679
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	4 cut(s)	46, 133, 480, 607
DinI	GGCGCC	1 cut(s)	727
DpnI	GATC	5 cut(s)	6, 104, 431, 570, 626
DpnII	GATC	5 cut(s)	4, 102, 429, 568, 624
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	3 cut(s)	77, 326, 404
EarI	CTCTTC	3 cut(s)	77, 326, 404
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	2 cut(s)	323, 367
EcoT14I	CCWWGG	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	727
EheI	GGCGCC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	6 cut(s)	23, 109, 253, 439, 543, 743
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	6 cut(s)	19, 105, 249, 435, 539, 739
Fnu4HI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
Fsp4HI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
HaeII	RGCGCY	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	408, 555, 564
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	728
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	23, 109, 253, 439, 543, 743
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	42, 707
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	2 cut(s)	72, 484
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	106, 427
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	532
HpyCH4III	ACNGT	5 cut(s)	16, 229, 421, 469, 644
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	5 cut(s)	19, 120, 245, 619, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
HpyF3I	CTNAG	4 cut(s)	46, 133, 480, 607
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	23, 109, 253, 439, 543, 743
HspAI	GCGC	1 cut(s)	726
KasI	GGCGCC	1 cut(s)	725
Kzo9I	GATC	5 cut(s)	4, 102, 429, 568, 624
LpnPI	CCDG	6 cut(s)	120, 203, 225, 404, 569, 641
Lsp1109I	GCAGC	5 cut(s)	177, 257, 400, 631, 676
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	78, 510, 644
MalI	GATC	5 cut(s)	6, 104, 431, 570, 626
MboI	GATC	5 cut(s)	4, 102, 429, 568, 624
MboII	GAAGA	7 cut(s)	58, 64, 124, 265, 313, 391, 415
MhlI	GDGCHC	2 cut(s)	467, 616
MluCI	AATT	3 cut(s)	87, 309, 711
Mly113I	GGCGCC	1 cut(s)	726
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	80, 93, 102, 179, 182, 386, 419
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	96, 720
MslI	CAYNNNNRTG	3 cut(s)	263, 329, 470
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	138
MvnI	CGCG	2 cut(s)	206, 428
MwoI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
NarI	GGCGCC	1 cut(s)	726
NciI	CCSGG	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	5 cut(s)	4, 102, 429, 568, 624
NlaIII	CATG	6 cut(s)	23, 109, 253, 439, 543, 743
NlaIV	GGNNCC	3 cut(s)	58, 670, 727
NmuCI	GTSAC	3 cut(s)	78, 510, 644
NruI	TCGCGA	1 cut(s)	428
NspI	RCATGY	2 cut(s)	23, 743
OliI	CACNNNNGTG	2 cut(s)	329, 470
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	5 cut(s)	192, 247, 415, 621, 691
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	720
PspN4I	GGNNCC	3 cut(s)	58, 670, 727
PstI	CTGCAG	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	622
RruI	TCGCGA	1 cut(s)	428
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	3 cut(s)	263, 329, 470
SaqAI	TTAA	2 cut(s)	96, 720
SatI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
Sau3AI	GATC	5 cut(s)	4, 102, 429, 568, 624
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	467, 616
SetI	ASST	4 cut(s)	33, 150, 446, 624
SfcI	CTRYAG	1 cut(s)	617
SfiI	GGCCNNNNNGGCC	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	727
SmiMI	CAYNNNNRTG	3 cut(s)	263, 329, 470
Sse9I	AATT	3 cut(s)	87, 309, 711
SsiI	CCGC	2 cut(s)	60, 204
SspDI	GGCGCC	1 cut(s)	725
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	5 cut(s)	16, 229, 421, 469, 644
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	455
TasI	AATT	3 cut(s)	87, 309, 711
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	2 cut(s)	96, 720
Tru9I	TTAA	2 cut(s)	96, 720
TscAI	CASTG	5 cut(s)	21, 331, 474, 621, 670
TseFI	GTSAC	3 cut(s)	78, 510, 644
TseI	GCWGC	5 cut(s)	190, 245, 413, 619, 689
Tsp45I	GTSAC	3 cut(s)	78, 510, 644
TspDTI	ATGAA	3 cut(s)	265, 528, 625
TspRI	CASTG	5 cut(s)	21, 331, 474, 621, 670
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	23, 743
XmnI	GAANNNNTTC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.