Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

877337 .. 879444

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g00800.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATAAAAAAACAATGCATGTTTTCAAGGTTTTGTTCGGAGTCTTGGGAAATGGCACCGCTCTCTTCCTCTTCTTGGCACCCACAATTACATTTAAGAGGATCATAAGGAAGAAATGCACAGAGCAGTTCTCAGGCATTCCCTACGTGATGACTATGCTCAACTGCCTCCTCTCCGCTTGGTATGGGCTGCCATTTGTGTCCGCAAACAACATTCTGGTGTCAACAATCAATGGGACTGGTGCAGCCATTGAACTGATATATGTGTTGGTCTTCATCATTTTTGCCCCCAAAAGGGAGAAGGCCAAAATTCTTGGTCTCTTCACTGCTGTGCTTGCTCTGTTCTCTGCTGTGGCATTGGTCTCTCTTTTTGCCCTCCACGACAAGACCCGGAAGCTCTTCTGTGGCCTCGCTGCTACCGTCTTCTCGATCATCATGTACAGCTCTCCTTTCTCGATTATGAGCACAGTGGTGAGAACTAAGAGTGTTGAGTTTATGCCATTTTTCTTGTCACTTTTCTCCTTCTTGTGTGGAACTTCATGGTTTATCTATGGCCTGCTTGGCCATGATCCATTTGTTGCTATTCCAAATGGGTTTGGGAGTGGCCTAGGGGCACTGCAGCTGATCCTGTACTTCATCTACCGTGACAACAAGGGCAAGGGCAGTGGCACCAAGAAGCCCAATGGTGCTGCAACTACTGCTGACGAATCAATGGATACGGGCCTTGCAAAACCCGACCAACAATCAAAGCAGTCAGTTACCATTAATGGCGCCCAAGATGGGCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

264

Amino Acids

28.63

Weight (kDa)

9.57

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	56, 79, 668, 770
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	3 cut(s)	60, 177, 204
AclWI	GGATC	3 cut(s)	110, 563, 619
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	2 cut(s)	440, 632
AfiI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
AgsI	TTSAA	2 cut(s)	28, 254
AleI	CACNNNNGTG	2 cut(s)	329, 470
AluBI	AGCT	3 cut(s)	397, 444, 622
AluI	AGCT	3 cut(s)	397, 444, 622
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	323, 367
AlwI	GGATC	3 cut(s)	110, 563, 619
AoxI	GGCC	6 cut(s)	303, 406, 553, 562, 604, 721
ApeKI	GCWGC	5 cut(s)	190, 245, 413, 619, 689
ApoI	RAATTY	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	398
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	484
AvrII	CCTAGG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	1 cut(s)	564
BanI	GGYRCC	4 cut(s)	56, 79, 668, 770
BbsI	GAAGAC	2 cut(s)	265, 415
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BccI	CCATC	1 cut(s)	773
BciVI	GTATCC	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	323, 367
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	774
BfuI	GTATCC	1 cut(s)	709
BglI	GCCNNNNNGGC	1 cut(s)	561
BisI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
BlnI	CCTAGG	1 cut(s)	607
BlsI	GCNGC	5 cut(s)	192, 247, 415, 621, 691
Bme1390I	CCNGG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	4 cut(s)	58, 81, 670, 772
BmrFI	CCNGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	265, 415
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpuMI	CCSGG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	2 cut(s)	323, 367
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
Bse1I	ACTGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	607
BseLI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	6 cut(s)	305, 408, 555, 564, 606, 723
BshNI	GGYRCC	4 cut(s)	56, 79, 668, 770
BsiHKAI	GWGCWC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	4 cut(s)	76, 294, 295, 780
BsmAI	GTCTC	2 cut(s)	323, 367
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	6 cut(s)	305, 408, 555, 564, 606, 723
Bso31I	GGTCTC	2 cut(s)	323, 367
Bsp1286I	GDGCHC	2 cut(s)	467, 616
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	102, 429, 568, 624
BspACI	CCGC	3 cut(s)	60, 177, 204
BspANI	GGCC	6 cut(s)	305, 408, 555, 564, 606, 723
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	4 cut(s)	58, 81, 670, 772
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	3 cut(s)	110, 563, 619
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	4 cut(s)	56, 79, 668, 770
BspTNI	GGTCTC	2 cut(s)	323, 367
BsrBI	CCGCTC	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	4 cut(s)	102, 429, 568, 624
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	607
Bst4CI	ACNGT	3 cut(s)	421, 469, 644
Bst6I	CTCTTC	4 cut(s)	71, 77, 326, 404
BstACI	GRCGYC	1 cut(s)	771
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	336, 557
BstDEI	CTNAG	2 cut(s)	133, 480
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	4 cut(s)	105, 432, 571, 627
BstMAI	GTCTC	2 cut(s)	323, 367
BstMBI	GATC	4 cut(s)	102, 429, 568, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
BstNSI	RCATGY	2 cut(s)	23, 788
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	5 cut(s)	177, 257, 400, 631, 676
BstV2I	GAAGAC	2 cut(s)	265, 415
BsuI	GTATCC	1 cut(s)	709
BsuRI	GGCC	6 cut(s)	305, 408, 555, 564, 606, 723
BtsI	GCAGTG	3 cut(s)	324, 614, 670
BtsIMutI	CAGTG	4 cut(s)	324, 474, 614, 670
Cac8I	GCNNGC	2 cut(s)	336, 557
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	721
Csp6I	GTAC	2 cut(s)	439, 631
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	5 cut(s)	20, 436, 540, 566, 785
CviQI	GTAC	2 cut(s)	439, 631
DdeI	CTNAG	2 cut(s)	133, 480
DinI	GGCGCC	1 cut(s)	772
DpnI	GATC	4 cut(s)	104, 431, 570, 626
DpnII	GATC	4 cut(s)	102, 429, 568, 624
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	71, 77, 326, 404
EarI	CTCTTC	4 cut(s)	71, 77, 326, 404
Eco130I	CCWWGG	1 cut(s)	607
Eco31I	GGTCTC	2 cut(s)	323, 367
EcoT14I	CCWWGG	1 cut(s)	607
EcoT22I	ATGCAT	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	772
EheI	GGCGCC	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	23, 439, 543, 569, 788
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	5 cut(s)	19, 435, 539, 565, 784
Fnu4HI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
Fsp4HI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	6 cut(s)	305, 408, 555, 564, 606, 723
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	5 cut(s)	23, 439, 543, 569, 788
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	42, 707
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	427, 454
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	295, 532
HpyCH4III	ACNGT	3 cut(s)	421, 469, 644
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	19, 120, 245, 619, 692, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
HpyF3I	CTNAG	2 cut(s)	133, 480
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	23, 439, 543, 569, 788
HspAI	GCGC	1 cut(s)	771
KasI	GGCGCC	1 cut(s)	770
Kzo9I	GATC	4 cut(s)	102, 429, 568, 624
LguI	GCTCTTC	1 cut(s)	404
LpnPI	CCDG	6 cut(s)	120, 203, 225, 404, 569, 641
Lsp1109I	GCAGC	5 cut(s)	177, 257, 400, 631, 676
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	510, 644, 757
MalI	GATC	4 cut(s)	104, 431, 570, 626
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	102, 429, 568, 624
MboII	GAAGA	7 cut(s)	58, 64, 124, 265, 313, 391, 415
MhlI	GDGCHC	2 cut(s)	467, 616
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	2 cut(s)	87, 309
MluNI	TGGCCA	1 cut(s)	564
Mly113I	GGCGCC	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	80, 93, 179, 182, 386, 419
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	2 cut(s)	96, 765
MslI	CAYNNNNRTG	3 cut(s)	218, 329, 470
Msp20I	TGGCCA	1 cut(s)	564
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	335, 561, 698
NarI	GGCGCC	1 cut(s)	771
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	102, 429, 568, 624
NlaIII	CATG	5 cut(s)	23, 439, 543, 569, 788
NlaIV	GGNNCC	4 cut(s)	58, 81, 670, 772
NmuCI	GTSAC	2 cut(s)	510, 644
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 788
OliI	CACNNNNGTG	2 cut(s)	329, 470
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	5 cut(s)	192, 247, 415, 621, 691
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	765
PspN4I	GGNNCC	4 cut(s)	58, 81, 670, 772
PspPI	GGNCC	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	440, 632
RsaNI	GTAC	2 cut(s)	439, 631
RseI	CAYNNNNRTG	3 cut(s)	218, 329, 470
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	96, 765
SatI	GCNGC	5 cut(s)	191, 246, 414, 620, 690
Sau3AI	GATC	4 cut(s)	102, 429, 568, 624
Sau96I	GGNCC	1 cut(s)	721
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	467, 616
SetI	ASST	5 cut(s)	33, 150, 399, 446, 624
SfcI	CTRYAG	1 cut(s)	617
SfiI	GGCCNNNNNGGCC	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	3 cut(s)	218, 329, 470
Sse9I	AATT	2 cut(s)	87, 309
SsiI	CCGC	3 cut(s)	60, 177, 204
SspDI	GGCGCC	1 cut(s)	770
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	3 cut(s)	421, 469, 644
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	428, 455
TasI	AATT	2 cut(s)	87, 309
TatI	WGTACW	2 cut(s)	438, 630
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	2 cut(s)	96, 765
Tru9I	TTAA	2 cut(s)	96, 765
TscAI	CASTG	4 cut(s)	331, 474, 621, 670
TseFI	GTSAC	2 cut(s)	510, 644
TseI	GCWGC	5 cut(s)	190, 245, 413, 619, 689
Tsp45I	GTSAC	2 cut(s)	510, 644
TspDTI	ATGAA	3 cut(s)	265, 528, 625
TspRI	CASTG	4 cut(s)	331, 474, 621, 670
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	23, 788
XmaJI	CCTAGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	608
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.