Rh6AG218900

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010415
Physical Location & Seq
Forward (+)
39448852 .. 39450718
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG218900.1

Sequence Viewer

Length: 609 bp
ATGACTTTCCTCAACTGCCTCCTCTCTGCTTGGTACGGGCTGCCGTTTGTGTCCCCGAACAACATTCTGGTGTCCACCATTAACGGCACCGGTGCAGTAATCGAAGCCATCTACGTGTTGATCTTCATCTACTTTGCTCCCAAGAGAGAGAAGGCTAAGATTATGGGCCTCTTCATTTTTGTGCTGGCTCTGTTCTCCGTCGTGGCCTTGGTTTCCGTCTTTGCCCTTCACGGCAGTGGCAGGAAGCTCTTGTGTGGCCTCGGCACCACCATCTTCTCCATCGTCATGTACGGCTCGCCTCTCTCAATCATGAGGATTGTGATAAAAACAAAGAGTGTGGAGTTTATGCCATTCTTCTTATCACTGTTTGTGTTCTTGTGTGGCACTTCCTGGTTCGTCTATGGGTTGCTGGGCCATGACCCTTTTGTCGCTGTGCCAAATGGGTTTGGGTGTGCTCTGGGGGCATTGCAGCTCATCTTGTACTTCATCTACCATGACAACAAGGGCGGCGACACCAAGAAGCAGCAGCCTAGTGCTGAAGACAATGTGGAGCTTGGCCTCGAAAAGCCTCACCAATTGAAGCAAGCAAATGGCGTTAATGGTGTTTAA

Protein Analysis

202

Amino Acids

22.1

Weight (kDa)

8.88

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 86 - 168 4e-27 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 86, 263
AciI CCGC 1 cut(s) 507
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 3 cut(s) 35, 290, 482
AflIII ACRYGT 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 3 cut(s) 247, 472, 553
AluI AGCT 3 cut(s) 247, 472, 553
Alw21I GWGCWC 1 cut(s) 457
AoxI GGCC 5 cut(s) 166, 204, 256, 412, 556
ApeKI GCWGC 4 cut(s) 40, 469, 523, 526
AsiGI ACCGGT 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 166, 412
AsuHPI GGTGA 1 cut(s) 563
BanI GGYRCC 2 cut(s) 86, 263
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 4 cut(s) 27, 481, 535, 538
BccI CCATC 3 cut(s) 116, 278, 287
BceAI ACGGC 4 cut(s) 28, 100, 247, 307
BciT130I CCWGG 1 cut(s) 391
BfaI CTAG 1 cut(s) 531
BisI GCNGC 5 cut(s) 41, 470, 508, 524, 527
BlsI GCNGC 5 cut(s) 42, 471, 509, 525, 528
Bme1390I CCNGG 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 166, 412
BmiI GGNNCC 2 cut(s) 88, 265
BmrFI CCNGG 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 207, 259
BsaWI WCCGGW 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 125
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 207, 259
BseJI GATNNNNATC 1 cut(s) 125
BseMI GCAATG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 4 cut(s) 27, 481, 535, 538
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 5 cut(s) 168, 206, 258, 414, 558
BshNI GGYRCC 2 cut(s) 86, 263
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 5 cut(s) 168, 206, 258, 414, 558
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 507
BspANI GGCC 5 cut(s) 168, 206, 258, 414, 558
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 88, 265
BspT107I GGYRCC 2 cut(s) 86, 263
BsrDI GCAATG 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 207, 259
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 115
BstC8I GCNNGC 3 cut(s) 186, 296, 585
BstDEI CTNAG 1 cut(s) 156
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 4 cut(s) 27, 481, 535, 538
BstV2I GAAGAC 1 cut(s) 546
BsuRI GGCC 5 cut(s) 168, 206, 258, 414, 558
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 241, 362
Cac8I GCNNGC 3 cut(s) 186, 296, 585
CciI TCATGA 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 166, 412
Csp6I GTAC 3 cut(s) 34, 289, 481
CspAI ACCGGT 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 4 cut(s) 286, 310, 416, 494
CviQI GTAC 3 cut(s) 34, 289, 481
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 4 cut(s) 289, 313, 419, 497
FaiI YATR 7 cut(s) 164, 287, 311, 347, 402, 417, 495
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 285, 309, 415, 493
Fnu4HI GCNGC 5 cut(s) 41, 470, 508, 524, 527
Fsp4HI GCNGC 5 cut(s) 41, 470, 508, 524, 527
FspBI CTAG 1 cut(s) 531
GluI GCNGC 5 cut(s) 41, 470, 508, 524, 527
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 5 cut(s) 168, 206, 258, 414, 558
HapII CCGG 1 cut(s) 90
Hin1II CATG 4 cut(s) 289, 313, 419, 497
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 145, 236
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 95, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 289, 313, 419, 497
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 142, 550
LpnPI CCDG 8 cut(s) 53, 103, 170, 226, 376, 395, 403, 443
Lsp1109I GCAGC 4 cut(s) 27, 481, 535, 538
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 114
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 5 cut(s) 115, 163, 265, 346, 551
MfeI CAATTG 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 575
MnlI CCTC 9 cut(s) 20, 29, 32, 179, 269, 306, 309, 569, 579
MseI TTAA 3 cut(s) 81, 597, 607
MslI CAYNNNNRTG 5 cut(s) 68, 113, 179, 234, 284
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 391
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 289, 313, 419, 497
NlaIV GGNNCC 2 cut(s) 88, 265
NmeAIII GCCGAG 1 cut(s) 240
OliI CACNNNNGTG 1 cut(s) 234
PagI TCATGA 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 5 cut(s) 42, 471, 509, 525, 528
Ppu21I YACGTR 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 88, 265
PspPI GGNCC 2 cut(s) 166, 412
RsaI GTAC 3 cut(s) 35, 290, 482
RsaNI GTAC 3 cut(s) 34, 289, 481
RseI CAYNNNNRTG 5 cut(s) 68, 113, 179, 234, 284
SaqAI TTAA 3 cut(s) 81, 597, 607
SatI GCNGC 5 cut(s) 41, 470, 508, 524, 527
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 166, 412
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 1 cut(s) 457
SetI ASST 4 cut(s) 117, 249, 474, 555
SgrAI CRCCGGYG 1 cut(s) 89
SmiMI CAYNNNNRTG 5 cut(s) 68, 113, 179, 234, 284
Sse9I AATT 1 cut(s) 575
SsiI CCGC 1 cut(s) 507
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 102, 561
TasI AATT 1 cut(s) 575
TatI WGTACW 1 cut(s) 480
TauI GCSGC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 81, 597, 607
Tru9I TTAA 3 cut(s) 81, 597, 607
TscAI CASTG 2 cut(s) 241, 369
TseI GCWGC 4 cut(s) 40, 469, 523, 526
TspDTI ATGAA 3 cut(s) 115, 163, 475
TspGWI ACGGA 2 cut(s) 187, 205
TspRI CASTG 2 cut(s) 241, 369
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.