Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8160446.1

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 613

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8160446.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

gtacgggctgccgtttgtgtccccgaacaacattctggtgtccaccattaacggcaccggtgcagtaatcgaagtcatctacgtgttgatcttcatcttctatgctcccaagagagagaaggctaagattatgggcctcttcatttttgtgctggctctgttctccgtcgtggccttggtttccgtctttgcccttcacggcagtggcaggaagctcttgtgtggcctcggcaccaccatcttctccatcgtcatgtacggctcgcctctctcaatcatgaggattgtgataaaaacaaagagtgtggagtttatgccattcttcttatcactgtttgtgttcttgtgtggcacttcctggttcgtctatgggctgctgggccatgaccctttcgtcgctgtaagtgtacttctttacgtcctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

142

Amino Acids

15.6

Weight (kDa)

9.43

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	393
AccB1I	GGYRCC	2 cut(s)	54, 231
AfaI	GTAC	3 cut(s)	3, 258, 409
AflIII	ACRYGT	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
AoxI	GGCC	4 cut(s)	134, 172, 224, 380
ApeKI	GCWGC	2 cut(s)	8, 374
AsiGI	ACCGGT	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	134, 380
BanI	GGYRCC	2 cut(s)	54, 231
BarI	GAAGNNNNNNTAC	2 cut(s)	394, 426
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	246, 255
BceAI	ACGGC	3 cut(s)	68, 215, 275
BciT130I	CCWGG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	9, 375
BlsI	GCNGC	2 cut(s)	10, 376
Bme1390I	CCNGG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	134, 380
BmiI	GGNNCC	2 cut(s)	56, 233
BmrFI	CCNGG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	175, 227
BsaWI	WCCGGW	1 cut(s)	57
Bse118I	RCCGGY	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	175, 227
BseJI	GATNNNNATC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	4 cut(s)	136, 174, 226, 382
BshNI	GGYRCC	2 cut(s)	54, 231
BshTI	ACCGGT	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	136, 174, 226, 382
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	4 cut(s)	136, 174, 226, 382
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	56, 233
BspT107I	GGYRCC	2 cut(s)	54, 231
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	175, 227
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	154, 264
BstDEI	CTNAG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	136, 174, 226, 382
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 330
Cac8I	GCNNGC	2 cut(s)	154, 264
CciI	TCATGA	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	134, 380
Csp6I	GTAC	3 cut(s)	2, 257, 408
CspAI	ACCGGT	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	254, 278, 384
CviQI	GTAC	3 cut(s)	2, 257, 408
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	257, 281, 387
FaiI	YATR	7 cut(s)	103, 132, 255, 279, 315, 370, 385
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	3 cut(s)	253, 277, 383
Fnu4HI	GCNGC	2 cut(s)	9, 375
Fsp4HI	GCNGC	2 cut(s)	9, 375
GluI	GCNGC	2 cut(s)	9, 375
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	136, 174, 226, 382
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	3 cut(s)	257, 281, 387
HpaII	CCGG	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	43, 408
Hpy188III	TCNNGA	2 cut(s)	278, 427
Hpy8I	GTNNAC	2 cut(s)	43, 408
Hpy99I	CGWCG	2 cut(s)	171, 399
HpyAV	CCTTC	2 cut(s)	113, 204
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	82, 418
HpyCH4V	TGCA	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	2 cut(s)	82, 418
Hsp92II	CATG	3 cut(s)	257, 281, 387
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	21, 71, 138, 194, 344, 363, 371
Lsp1109I	GCAGC	1 cut(s)	361
MaeII	ACGT	2 cut(s)	82, 418
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	5 cut(s)	83, 89, 131, 233, 314
MnlI	CCTC	4 cut(s)	147, 237, 274, 277
MseI	TTAA	1 cut(s)	49
MslI	CAYNNNNRTG	5 cut(s)	36, 81, 147, 202, 252
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	257, 281, 387
NlaIV	GGNNCC	2 cut(s)	56, 233
NmeAIII	GCCGAG	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	10, 376
Ppu21I	YACGTR	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	2 cut(s)	56, 233
PspPI	GGNCC	2 cut(s)	134, 380
RsaI	GTAC	3 cut(s)	3, 258, 409
RsaNI	GTAC	3 cut(s)	2, 257, 408
RseI	CAYNNNNRTG	5 cut(s)	36, 81, 147, 202, 252
SaqAI	TTAA	1 cut(s)	49
SatI	GCNGC	2 cut(s)	9, 375
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	134, 380
ScrFI	CCNGG	1 cut(s)	359
SetI	ASST	3 cut(s)	85, 217, 421
SgrAI	CRCCGGYG	1 cut(s)	57
SmiMI	CAYNNNNRTG	5 cut(s)	36, 81, 147, 202, 252
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	85, 421
TaqI	TCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	49
Tru9I	TTAA	1 cut(s)	49
TscAI	CASTG	2 cut(s)	209, 337
TseI	GCWGC	2 cut(s)	8, 374
TspDTI	ATGAA	2 cut(s)	83, 131
TspGWI	ACGGA	2 cut(s)	155, 173
TspRI	CASTG	2 cut(s)	209, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.