Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

29463298 .. 29464872

Gene Structure 1575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013303

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACGTCCTCAAGTTCTTGTTCGGAATCTTCGGTAATGCCACCGCTCTCTTCCTCTTCTTGTCGCCGACGATTACATTCAGGAGGATCATACAGAAGAGAAACACAGAGCAGTTTTCAGGCATTCCTTACGTCATGACTTTCCTCAACTGCCTCCTCTCTGCTTGGTACGGGCTACCGTTTGTGTCCCCGAACAACATTCTGGTGAGCACCATTAACGGCACCGGTGCTGTAATCGAAGCCGTCTACGTGTTGATCTTCATCGTCTTTGCTCCGAAGAGAGAGAAGGCTAAGATTCTGGGCCTCTTCGCTTTTGTGCTGGCTGTGTTCTCCGTCGTGGCCTTGGTTTCCGTCTTTGCCCTTCACGGCAGTGGCAGGAAGCTCTTGTGTGGCCTCGCCGCCTCCATCTTCTCCATCGTCATGTACGGCTCGCCGCTCTCAATCATGAGGATTGTGGTAAAAACAAAGAGTGTGGAGTTTATGCCATTCTTCTTGTCACTGTTTGTGTTCTTGTGTGGCACTTCCTGGTTCGTCTTTGGGCTGCTGGGCCATGACCCTTTTGTGGCTGTGCCAAATGGGTTTGGGTGTGCTCTGGGGGCATTGCAGCTCATCTTGTACTTCATCTACCATGACAACAAGGGTGGCGACACCAAGAAGCAGCAGCCTAGTGCTGAAGACAATGTGGAGCTTGGCCTCCAAAAGCCTCACCAATCGAAGCAAGCAAATGGCGTTAATGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

248

Amino Acids

27.05

Weight (kDa)

9.43

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	7 - 94	7.1e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 213	3.7e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	2 cut(s)	47, 436
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	3 cut(s)	45, 399, 434
AclWI	GGATC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	3 cut(s)	170, 425, 617
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	249
AgeI	ACCGGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	524
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	3 cut(s)	382, 607, 688
AluI	AGCT	3 cut(s)	382, 607, 688
Alw21I	GWGCWC	2 cut(s)	212, 592
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	5 cut(s)	301, 339, 391, 547, 691
ApeKI	GCWGC	4 cut(s)	541, 604, 658, 661
AsiGI	ACCGGT	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	301, 547
AsuHPI	GGTGA	2 cut(s)	217, 698
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	2 cut(s)	212, 592
BbvI	GCAGC	4 cut(s)	528, 616, 670, 673
BccI	CCATC	2 cut(s)	413, 422
BceAI	ACGGC	4 cut(s)	227, 235, 382, 442
BciT130I	CCWGG	1 cut(s)	526
BfaI	CTAG	1 cut(s)	666
BisI	GCNGC	6 cut(s)	399, 434, 542, 605, 659, 662
BlsI	GCNGC	6 cut(s)	400, 435, 543, 606, 660, 663
Bme1390I	CCNGG	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	301, 547
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	599
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	4 cut(s)	528, 616, 670, 673
BseYI	CCCAGC	1 cut(s)	544
BshFI	GGCC	5 cut(s)	303, 341, 393, 549, 693
BshNI	GGYRCC	1 cut(s)	221
BshTI	ACCGGT	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	212, 592
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	5 cut(s)	303, 341, 393, 549, 693
Bsp1286I	GDGCHC	2 cut(s)	212, 592
Bsp143I	GATC	2 cut(s)	87, 255
BspACI	CCGC	3 cut(s)	45, 399, 434
BspANI	GGCC	5 cut(s)	303, 341, 393, 549, 693
BspHI	TCATGA	2 cut(s)	135, 444
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	2 cut(s)	47, 436
BsrDI	GCAATG	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	87, 255
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	2 cut(s)	180, 501
Bst6I	CTCTTC	5 cut(s)	56, 62, 92, 272, 311
BstACI	GRCGYC	1 cut(s)	6
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	3 cut(s)	321, 431, 720
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	90, 258
BstMBI	GATC	2 cut(s)	87, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstNI	CCWGG	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	528, 616, 670, 673
BstV2I	GAAGAC	1 cut(s)	681
BsuRI	GGCC	5 cut(s)	303, 341, 393, 549, 693
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	376, 497
Cac8I	GCNNGC	3 cut(s)	321, 431, 720
CciI	TCATGA	2 cut(s)	135, 444
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	301, 547
Csp6I	GTAC	3 cut(s)	169, 424, 616
CspAI	ACCGGT	1 cut(s)	224
CspCI	CAANNNNNGTGG	4 cut(s)	453, 488, 622, 657
CviAII	CATG	5 cut(s)	136, 421, 445, 551, 629
CviQI	GTAC	3 cut(s)	169, 424, 616
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	89, 257
DpnII	GATC	2 cut(s)	87, 255
Eam1104I	CTCTTC	5 cut(s)	56, 62, 92, 272, 311
EarI	CTCTTC	5 cut(s)	56, 62, 92, 272, 311
Eco130I	CCWWGG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	5 cut(s)	139, 424, 448, 554, 632
FaiI	YATR	7 cut(s)	92, 137, 422, 446, 482, 552, 630
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	5 cut(s)	135, 420, 444, 550, 628
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	6 cut(s)	399, 434, 542, 605, 659, 662
Fsp4HI	GCNGC	6 cut(s)	399, 434, 542, 605, 659, 662
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	6 cut(s)	399, 434, 542, 605, 659, 662
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	5 cut(s)	303, 341, 393, 549, 693
HapII	CCGG	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	139, 424, 448, 554, 632
HinfI	GANTC	2 cut(s)	27, 295
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	217, 698
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	26, 276
Hpy188III	TCNNGA	3 cut(s)	82, 136, 445
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	73, 338
HpyAV	CCTTC	2 cut(s)	280, 371
HpyCH4III	ACNGT	2 cut(s)	180, 501
HpyCH4IV	ACGT	3 cut(s)	6, 132, 249
HpyCH4V	TGCA	1 cut(s)	604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	3 cut(s)	6, 132, 249
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	139, 424, 448, 554, 632
Kzo9I	GATC	2 cut(s)	87, 255
LmnI	GCTCC	2 cut(s)	277, 685
Lsp1109I	GCAGC	4 cut(s)	528, 616, 670, 673
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	3 cut(s)	6, 132, 249
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	2 cut(s)	89, 257
MbiI	CCGCTC	2 cut(s)	47, 436
MboI	GATC	2 cut(s)	87, 255
MhlI	GDGCHC	2 cut(s)	212, 592
MseI	TTAA	3 cut(s)	216, 732, 742
MslI	CAYNNNNRTG	3 cut(s)	203, 369, 419
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	526
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeII	GATC	2 cut(s)	87, 255
NlaIII	CATG	5 cut(s)	139, 424, 448, 554, 632
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	369
PagI	TCATGA	2 cut(s)	135, 444
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	27, 295
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	6 cut(s)	400, 435, 543, 606, 660, 663
Ppu21I	YACGTR	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	301, 547
RsaI	GTAC	3 cut(s)	170, 425, 617
RsaNI	GTAC	3 cut(s)	169, 424, 616
RseI	CAYNNNNRTG	3 cut(s)	203, 369, 419
SaqAI	TTAA	3 cut(s)	216, 732, 742
SatI	GCNGC	6 cut(s)	399, 434, 542, 605, 659, 662
Sau3AI	GATC	2 cut(s)	87, 255
Sau96I	GGNCC	2 cut(s)	301, 547
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	2 cut(s)	212, 592
SetI	ASST	6 cut(s)	9, 135, 252, 384, 609, 690
SgrAI	CRCCGGYG	1 cut(s)	224
SmiMI	CAYNNNNRTG	3 cut(s)	203, 369, 419
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	3 cut(s)	45, 399, 434
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	180, 501
TaiI	ACGT	3 cut(s)	9, 135, 252
TaqI	TCGA	2 cut(s)	237, 713
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	401, 436
TfiI	GAWTC	2 cut(s)	27, 295
Tru1I	TTAA	3 cut(s)	216, 732, 742
Tru9I	TTAA	3 cut(s)	216, 732, 742
TscAI	CASTG	2 cut(s)	376, 504
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	4 cut(s)	541, 604, 658, 661
Tsp45I	GTSAC	1 cut(s)	495
TspDTI	ATGAA	2 cut(s)	250, 610
TspGWI	ACGGA	2 cut(s)	322, 340
TspRI	CASTG	2 cut(s)	376, 504
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	666
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.