Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1678542 .. 1680688

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1012200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCATGTTTTCAAGGTTTTGTTCGGAGTCTTAGGAAATGGCACCGCTTTCTTCCTCTTCTTGTCACCCACAATTACATTTAAGAGGATCATAAGGAAGAAATGCACAGAGCAGTTCTCAGGCATTCCCTACGTGATGACTATGCTCAACTGCCTCCTCTACACTTGGTATGGGCTGCCATTTGTATCCGCAAACAACTTTCTGGTGTCAACAGTCAATGGGACTGGTGCAGCCATGGAACTGATATATGTGTTGGTCTTCATCATTTTCGCCCCCAAAAGGGAGAAAGCCAAAATTCTTGGTCTCTTCACTGCTGTGCTTGCTCTGTTCTCTGCTGTGGCATTGGTCTCTCTTTTTGCCCTCCACGACAAGACCCGGAAGCTTTTCTGTGGCCTCGCTGCTACCGTCTTCGCGATCATCATGTTCAGCTCTCCTTTGTCGATTATGAGCACAGTGGTGAGAACTAAGAGTGTTGAGTTTATGCCATTTTTCTTGTCACTTTTCTCCTTCTTGTGTGGAACTTCATGGTTTATCTATGGCCTGCTTGGCCGTGATCCATTTGTTGCTATTCCAAATGGGTGTGGGAGTGGCTTAGGGGCACTGCAGCTGATCCTGTACTTCATCTACCGTGACAACAAGGGCAAGGGCAGTGGCACCACGAAGCCCAATGGTGCTGCAACTACTGCTGACGAATCAATTACCATTAATGGCGCCCAAGATGGGCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0012505 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0031984 GO:0034219 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

244

Amino Acids

26.5

Weight (kDa)

9.54

Isoelectric Point (pI)

21.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	7 - 94	1.4e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 213	1.6e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21460 AT1G21460
fragaria_vesca	FvH4_2g14860
malus_domestica	MD05G1012200.v1.1 MD10G1012200.v1.1 MD10G1013100.v1.1
prunus_persica	Prupe.8G017400_v2.0.a1 Prupe.8G017400_v2.0.a1
pyrus_communis	pycom05g00710 pycom10g00800
rosa_chinensis	RchiOBHm_Chr6g0277441
rosa_laevigata	RLG00000013303
rosa_multiflora	Rmu_co8160446.1_g000001 Rmu_sc0000030.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191340
rosa_rugosa	Rorug06G0108000 Rorug06G0108000
rosa_samantha	Rh6AG218900 Rh6BG222800 Rh6CG225400
rosa_wichuraiana	Rw6G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	41, 653, 710
AccII	CGCG	1 cut(s)	413
AciI	CCGC	2 cut(s)	45, 189
AclWI	GGATC	3 cut(s)	95, 548, 604
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	279, 280, 720
AgsI	TTSAA	1 cut(s)	13
AleI	CACNNNNGTG	2 cut(s)	314, 455
AluBI	AGCT	3 cut(s)	382, 429, 607
AluI	AGCT	3 cut(s)	382, 429, 607
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	308, 352
AlwI	GGATC	3 cut(s)	95, 548, 604
AoxI	GGCC	3 cut(s)	391, 538, 547
ApeKI	GCWGC	5 cut(s)	175, 230, 398, 604, 674
ApoI	RAATTY	1 cut(s)	294
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	57, 469
BaeGI	GKGCMC	1 cut(s)	601
BanI	GGYRCC	3 cut(s)	41, 653, 710
BbsI	GAAGAC	2 cut(s)	250, 400
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	5 cut(s)	162, 242, 385, 616, 661
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	308, 352
BfmI	CTRYAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	196
BglI	GCCNNNNNGGC	1 cut(s)	546
BisI	GCNGC	5 cut(s)	176, 231, 399, 605, 675
BlsI	GCNGC	5 cut(s)	177, 232, 400, 606, 676
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	43, 655, 712
BmrFI	CCNGG	1 cut(s)	376
BpiI	GAAGAC	2 cut(s)	250, 400
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu10I	CCTNAGC	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	711
BsaI	GGTCTC	2 cut(s)	308, 352
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 280, 720
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	279, 280, 720
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	5 cut(s)	162, 242, 385, 616, 661
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	3 cut(s)	393, 540, 549
BshNI	GGYRCC	3 cut(s)	41, 653, 710
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	279, 280, 720
BsmAI	GTCTC	2 cut(s)	308, 352
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	393, 540, 549
Bso31I	GGTCTC	2 cut(s)	308, 352
Bsp1286I	GDGCHC	2 cut(s)	452, 601
Bsp143I	GATC	4 cut(s)	87, 414, 553, 609
Bsp19I	CCATGG	1 cut(s)	234
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	2 cut(s)	45, 189
BspANI	GGCC	3 cut(s)	393, 540, 549
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	3 cut(s)	43, 655, 712
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	3 cut(s)	95, 548, 604
BspT107I	GGYRCC	3 cut(s)	41, 653, 710
BspTNI	GGTCTC	2 cut(s)	308, 352
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	4 cut(s)	87, 414, 553, 609
BssNI	GRCGYC	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	214, 406, 454, 629
Bst6I	CTCTTC	2 cut(s)	62, 311
BstACI	GRCGYC	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	321, 542
BstDEI	CTNAG	4 cut(s)	31, 118, 465, 592
BstDSI	CCRYGG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	4 cut(s)	90, 417, 556, 612
BstMAI	GTCTC	2 cut(s)	308, 352
BstMBI	GATC	4 cut(s)	87, 414, 553, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 546, 683
BstNSI	RCATGY	2 cut(s)	8, 728
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	5 cut(s)	162, 242, 385, 616, 661
BstV2I	GAAGAC	2 cut(s)	250, 400
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	393, 540, 549
BtgI	CCRYGG	1 cut(s)	234
BtsI	GCAGTG	3 cut(s)	309, 599, 655
BtsIMutI	CAGTG	4 cut(s)	309, 459, 599, 655
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	321, 542
CfoI	GCGC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	616
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	5 cut(s)	5, 235, 421, 525, 725
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	4 cut(s)	31, 118, 465, 592
DinI	GGCGCC	1 cut(s)	712
DpnI	GATC	4 cut(s)	89, 416, 555, 611
DpnII	GATC	4 cut(s)	87, 414, 553, 609
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	2 cut(s)	62, 311
EarI	CTCTTC	2 cut(s)	62, 311
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	2 cut(s)	308, 352
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	712
EheI	GGCGCC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	5 cut(s)	8, 238, 424, 528, 728
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	4, 234, 420, 524, 724
Fnu4HI	GCNGC	5 cut(s)	176, 231, 399, 605, 675
Fsp4HI	GCNGC	5 cut(s)	176, 231, 399, 605, 675
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	5 cut(s)	176, 231, 399, 605, 675
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	3 cut(s)	393, 540, 549
HapII	CCGG	1 cut(s)	376
HhaI	GCGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	8, 238, 424, 528, 728
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	27, 692
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	57, 469
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	4 cut(s)	214, 406, 454, 629
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	5 cut(s)	4, 105, 230, 604, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 546, 683
HpyF3I	CTNAG	4 cut(s)	31, 118, 465, 592
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	5 cut(s)	8, 238, 424, 528, 728
HspAI	GCGC	1 cut(s)	711
KasI	GGCGCC	1 cut(s)	710
Kzo9I	GATC	4 cut(s)	87, 414, 553, 609
LpnPI	CCDG	6 cut(s)	105, 188, 210, 389, 554, 626
Lsp1109I	GCAGC	5 cut(s)	162, 242, 385, 616, 661
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	63, 495, 629
MalI	GATC	4 cut(s)	89, 416, 555, 611
MboI	GATC	4 cut(s)	87, 414, 553, 609
MboII	GAAGA	6 cut(s)	43, 49, 109, 250, 298, 400
MhlI	GDGCHC	2 cut(s)	452, 601
MluCI	AATT	3 cut(s)	72, 294, 696
Mly113I	GGCGCC	1 cut(s)	711
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	65, 78, 164, 167, 371, 404
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	2 cut(s)	81, 705
MslI	CAYNNNNRTG	2 cut(s)	314, 455
MspA1I	CMGCKG	1 cut(s)	607
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	123
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	320, 546, 683
NarI	GGCGCC	1 cut(s)	711
NciI	CCSGG	1 cut(s)	376
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	87, 414, 553, 609
NlaIII	CATG	5 cut(s)	8, 238, 424, 528, 728
NlaIV	GGNNCC	3 cut(s)	43, 655, 712
NmuCI	GTSAC	3 cut(s)	63, 495, 629
NruI	TCGCGA	1 cut(s)	413
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 728
OliI	CACNNNNGTG	2 cut(s)	314, 455
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	177, 232, 400, 606, 676
PleI	GAGTC	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	43, 655, 712
PstI	CTGCAG	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	607
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	2 cut(s)	314, 455
SaqAI	TTAA	2 cut(s)	81, 705
SatI	GCNGC	5 cut(s)	176, 231, 399, 605, 675
Sau3AI	GATC	4 cut(s)	87, 414, 553, 609
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	2 cut(s)	452, 601
SetI	ASST	5 cut(s)	18, 135, 384, 431, 609
SfcI	CTRYAG	1 cut(s)	602
SfiI	GGCCNNNNNGGCC	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	314, 455
Sse9I	AATT	3 cut(s)	72, 294, 696
SsiI	CCGC	2 cut(s)	45, 189
SspDI	GGCGCC	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	4 cut(s)	214, 406, 454, 629
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	440
TasI	AATT	3 cut(s)	72, 294, 696
TatI	WGTACW	1 cut(s)	615
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	2 cut(s)	81, 705
Tru9I	TTAA	2 cut(s)	81, 705
TscAI	CASTG	4 cut(s)	316, 459, 606, 655
TseFI	GTSAC	3 cut(s)	63, 495, 629
TseI	GCWGC	5 cut(s)	175, 230, 398, 604, 674
Tsp45I	GTSAC	3 cut(s)	63, 495, 629
TspDTI	ATGAA	3 cut(s)	250, 513, 610
TspRI	CASTG	4 cut(s)	316, 459, 606, 655
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	2 cut(s)	8, 728
XmnI	GAANNNNTTC	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.