AT1G21510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016021
Physical Location & Seq
Reverse (-)
7531312 .. 7532745
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21510.1

Sequence Viewer

Length: 972 bp
ATGGGTTGTTGTATCAGCAAATGCTCTCCAAAGTCGAAAGATTTCAAAGAAGCAGAAGAACCTCACGAGAAGTACTGTTCTGTTCCAGAGAAGATGTTCATGTCTCGTTGTCCAAGTCGTGTTTCTCCACTTAATCTTCCGGAGAAAAACCGGTTTCATCCTATCCCTGTCCCGAATAAGTTTATCAATATCCCGGGTAAAGTAATCCCTCCCCCTTCTCCTGTGAAGTTGGCATCTTTCTCTCCAATCCAACCTTCAACCACAAGCAACTCTTCTCTCAGCTCATCAAACTCGTCACTTTCGACCGCCTCTTCAGTTTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTTACCAAGAGAATTCACATGTTGCTCGAATCAATTCCTTACGAGAAGCTTCTCTATCTATGAAAACCACAAAACCGAGATATCCTAGCCGGTTTGATTCTCCGGTTATACCAAGCCGGAATTCAACAACACCAAACAGAGCAAATGAAGATTCTAAAAGAGGATCAAATTGTTCTAAGAGAACTCGAGAGCTATCACCAAACCATCGTTCATTGACACGACAAAAGAGCTTTCGTCAAGATCAAGAAAGAGTTGTTATCTCTTCTTCATCAAACTCCTTAACCAAGGGAAAGTACTTGAAATCTCCATCTCCAAGCAGAAGATATGAGGGAAATTTCTTGAAATCACCATCTCCAAGCCGGAGATTTGGTGTAGCCGCGGCTAGTTTGACGGTCTCTTCTTGTGTAAGGAAAGATAGTTTAGATCTGTCTGGTCGCAAGATTTGTCATATGAGCAACAGATCAGAGCCTCGAATACATCGCATAAGTTCTAAGATCGACCAAACAATTATCAGAGAAGTAATCACAAAAGATAGGGAACCAGTGGTTCCAATATTTGAAGAAGTTGGCAATCCTTTGATTGATTTGGATTGCTTTATCTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.13

Weight (kDa)

9.95

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 743
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 3 cut(s) 306, 741, 743
AclWI GGATC 1 cut(s) 535
AcsI RAATTY 3 cut(s) 376, 484, 697
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 74, 659
AflIII ACRYGT 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 6 cut(s) 46, 258, 489, 664, 706, 923
AjuI GAANNNNNNNTTGG 8 cut(s) 106, 138, 238, 270, 469, 501, 556, 588
AluBI AGCT 4 cut(s) 282, 413, 556, 594
AluI AGCT 4 cut(s) 282, 413, 556, 594
Alw26I GTCTC 2 cut(s) 108, 763
AlwI GGATC 1 cut(s) 535
Ama87I CYCGRG 2 cut(s) 193, 549
Aor13HI TCCGGA 1 cut(s) 139
ApoI RAATTY 3 cut(s) 376, 484, 697
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 3 cut(s) 41, 95, 397
AsuC2I CCSGG 2 cut(s) 194, 195
AsuHPI GGTGA 2 cut(s) 552, 702
AsuII TTCGAA 1 cut(s) 326
AvaI CYCGRG 2 cut(s) 193, 549
BauI CACGAG 1 cut(s) 65
BccI CCATC 3 cut(s) 576, 679, 721
BcnI CCSGG 2 cut(s) 194, 195
BcoDI GTCTC 2 cut(s) 108, 763
BfaI CTAG 2 cut(s) 450, 747
BglII AGATCT 2 cut(s) 335, 787
BisI GCNGC 2 cut(s) 741, 744
BlsI GCNGC 2 cut(s) 742, 745
BmcAI AGTACT 2 cut(s) 74, 659
Bme1390I CCNGG 2 cut(s) 194, 195
BmeT110I CYCGRG 2 cut(s) 193, 549
BmiI GGNNCC 2 cut(s) 903, 912
BmrFI CCNGG 2 cut(s) 194, 195
BmsI GCATC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 194, 195
BsaI GGTCTC 1 cut(s) 763
BsaJI CCNNGG 3 cut(s) 193, 648, 741
BsaWI WCCGGW 3 cut(s) 139, 150, 466
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bse118I RCCGGY 2 cut(s) 150, 453
Bse1I ACTGG 1 cut(s) 905
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 193, 648, 741
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 905
Bsh1236I CGCG 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 306
BshTI ACCGGT 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 193, 549
BsiSI CCGG 7 cut(s) 140, 151, 194, 454, 467, 481, 724
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 108, 763
BsmFI GGGAC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 763
BsoBI CYCGRG 2 cut(s) 193, 549
Bsp119I TTCGAA 1 cut(s) 326
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 6 cut(s) 335, 527, 604, 787, 824, 858
BspACI CCGC 3 cut(s) 306, 741, 743
BspCNI CTCAG 1 cut(s) 291
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 2 cut(s) 903, 912
BspPI GGATC 1 cut(s) 535
BspT104I TTCGAA 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 763
BsrFI RCCGGY 2 cut(s) 150, 453
BsrI ACTGG 1 cut(s) 905
BssAI RCCGGY 2 cut(s) 150, 453
BssECI CCNNGG 3 cut(s) 193, 648, 741
BssMI GATC 6 cut(s) 335, 527, 604, 787, 824, 858
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 648
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 77, 757
Bst6I CTCTTC 4 cut(s) 277, 316, 631, 766
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 278, 540, 855
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 6 cut(s) 338, 530, 607, 790, 827, 861
BstMAI GTCTC 2 cut(s) 108, 763
BstMBI GATC 6 cut(s) 335, 527, 604, 787, 824, 858
BstMCI CGRYCG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 192, 193
BstUI CGCG 1 cut(s) 743
BstX2I RGATCY 2 cut(s) 335, 787
BstYI RGATCY 2 cut(s) 335, 787
BtgI CCRYGG 1 cut(s) 741
BtgZI GCGATG 1 cut(s) 827
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 1 cut(s) 360
Cfr10I RCCGGY 2 cut(s) 150, 453
Cfr42I CCGCGG 1 cut(s) 744
Cfr9I CCCGGG 1 cut(s) 193
Csp6I GTAC 2 cut(s) 73, 658
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 2 cut(s) 100, 383
CviQI GTAC 2 cut(s) 73, 658
DdeI CTNAG 3 cut(s) 278, 540, 855
DpnI GATC 6 cut(s) 337, 529, 606, 789, 826, 860
DpnII GATC 6 cut(s) 335, 527, 604, 787, 824, 858
Eam1104I CTCTTC 4 cut(s) 277, 316, 631, 766
EarI CTCTTC 4 cut(s) 277, 316, 631, 766
Eco130I CCWWGG 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 763
Eco32I GATATC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 2 cut(s) 193, 549
EcoRI GAATTC 2 cut(s) 376, 484
EcoRV GATATC 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 2 cut(s) 103, 386
FaiI YATR 8 cut(s) 101, 384, 425, 473, 690, 813, 815, 848
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 99, 382
FauNDI CATATG 1 cut(s) 813
Fnu4HI GCNGC 2 cut(s) 741, 744
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 741, 744
FspBI CTAG 2 cut(s) 450, 747
GluI GCNGC 2 cut(s) 741, 744
HapII CCGG 7 cut(s) 140, 151, 194, 454, 467, 481, 724
Hin1II CATG 2 cut(s) 103, 386
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 393, 461, 515
HpaII CCGG 7 cut(s) 140, 151, 194, 454, 467, 481, 724
HphI GGTGA 2 cut(s) 552, 702
Hpy188I TCNGA 2 cut(s) 829, 878
Hpy188III TCNNGA 8 cut(s) 65, 86, 140, 172, 551, 602, 608, 703
HpyAV CCTTC 3 cut(s) 225, 264, 322
HpyCH4III ACNGT 2 cut(s) 77, 757
HpyF3I CTNAG 3 cut(s) 278, 540, 855
Hsp92II CATG 2 cut(s) 103, 386
Kpn2I TCCGGA 1 cut(s) 139
KspI CCGCGG 1 cut(s) 744
Kzo9I GATC 6 cut(s) 335, 527, 604, 787, 824, 858
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 450, 747
MaeIII GTNAC 2 cut(s) 294, 365
MalI GATC 6 cut(s) 337, 529, 606, 789, 826, 860
MboI GATC 6 cut(s) 335, 527, 604, 787, 824, 858
MflI RGATCY 2 cut(s) 335, 787
MluCI AATT 6 cut(s) 376, 397, 484, 532, 697, 870
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 72, 219, 319, 518, 685, 843
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 3 cut(s) 41, 95, 397
MseI TTAA 3 cut(s) 132, 644, 970
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 7 cut(s) 140, 151, 194, 454, 467, 481, 724
MspR9I CCNGG 2 cut(s) 194, 195
MvnI CGCG 1 cut(s) 743
NciI CCSGG 2 cut(s) 194, 195
NdeI CATATG 1 cut(s) 813
NdeII GATC 6 cut(s) 335, 527, 604, 787, 824, 858
NlaIII CATG 2 cut(s) 103, 386
NlaIV GGNNCC 2 cut(s) 903, 912
NmuCI GTSAC 1 cut(s) 294
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 549
PciI ACATGT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PdmI GAANNNNTTC 3 cut(s) 41, 95, 397
PfeI GAWTC 3 cut(s) 393, 461, 515
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 2 cut(s) 742, 745
PscI ACATGT 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 903, 912
PsuI RGATCY 2 cut(s) 335, 787
RsaI GTAC 2 cut(s) 74, 659
RsaNI GTAC 2 cut(s) 73, 658
SacII CCGCGG 1 cut(s) 744
SaqAI TTAA 3 cut(s) 132, 644, 970
SatI GCNGC 2 cut(s) 741, 744
Sau3AI GATC 6 cut(s) 335, 527, 604, 787, 824, 858
ScaI AGTACT 2 cut(s) 74, 659
ScrFI CCNGG 2 cut(s) 194, 195
SetI ASST 6 cut(s) 64, 256, 284, 415, 558, 596
SfaNI GCATC 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 549
Sfr303I CCGCGG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 744
SlaI CTCGAG 1 cut(s) 549
SmaI CCCGGG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 6 cut(s) 376, 397, 484, 532, 697, 870
SsiI CCGC 3 cut(s) 306, 741, 743
SspI AATATT 1 cut(s) 918
SspMI CTAG 2 cut(s) 450, 747
StyD4I CCNGG 2 cut(s) 192, 193
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 2 cut(s) 77, 757
TaqI TCGA 7 cut(s) 35, 302, 326, 391, 550, 835, 861
TasI AATT 6 cut(s) 376, 397, 484, 532, 697, 870
TatI WGTACW 2 cut(s) 72, 657
TauI GCSGC 2 cut(s) 743, 746
TfiI GAWTC 3 cut(s) 393, 461, 515
Tru1I TTAA 3 cut(s) 132, 644, 970
Tru9I TTAA 3 cut(s) 132, 644, 970
TscAI CASTG 1 cut(s) 912
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 6 cut(s) 88, 146, 440, 525, 564, 621
TspMI CCCGGG 1 cut(s) 193
TspRI CASTG 1 cut(s) 912
XapI RAATTY 3 cut(s) 376, 484, 697
XceI RCATGY 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 549
XmaI CCCGGG 1 cut(s) 193
XmnI GAANNNNTTC 3 cut(s) 41, 95, 397
XspI CTAG 2 cut(s) 450, 747
ZrmI AGTACT 2 cut(s) 74, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.