Rroxscaffold_7G00161330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016021
Physical Location & Seq
Forward (+)
4109315 .. 4110214
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161330.1

Sequence Viewer

Length: 900 bp
ATGGGTTCTTGCATTAGCAAATGCAGTCCCAAAAACCACTTTCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCCAAGACAAACTGGTAATCTCAACCCAACCTCCTAAACCCACCACACCAATTCCTTCTCACCATTCAAACAAAATCTCACCCTTTCCTTCTTCCCCTTCAAATTCCACTTCCTCAGTTTCTTCCTTCAGTTATTGCCCCACCACCACTGCTAGTAGTAGTACTACTAATTCTAACTCCACCATCAGCTCATCGAGCTCAACCTTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCAAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACTTTGAAAAAACAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACACCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTAAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACCGTCTCCGAGTAGAAGGTTAAATGTTTCAGAGAAGAACAGGGGAACAGTAATGGCCAACCCGCCAAAAAGGGGCTCAAATCTTAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTTTGGCTCATGACCATTACATGGAGTCTGTTCCTGAGGACATTGATAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.78

Weight (kDa)

9.82

Isoelectric Point (pI)

71.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 835
AccIII TCCGGA 1 cut(s) 504
AciI CCGC 3 cut(s) 422, 491, 662
AclWI GGATC 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 187, 282
AfaI GTAC 3 cut(s) 238, 478, 514
AfeI AGCGCT 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 671, 835
AgsI TTSAA 8 cut(s) 44, 144, 177, 315, 336, 393, 433, 739
AluBI AGCT 5 cut(s) 264, 273, 543, 591, 815
AluI AGCT 5 cut(s) 264, 273, 543, 591, 815
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 609, 749
AlwI GGATC 1 cut(s) 785
Ama87I CYCGRG 1 cut(s) 557
Aor13HI TCCGGA 1 cut(s) 504
Aor51HI AGCGCT 1 cut(s) 292
AoxI GGCC 3 cut(s) 654, 686, 728
ApeKI GCWGC 4 cut(s) 288, 419, 442, 445
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 293
AsuHPI GGTGA 4 cut(s) 128, 147, 510, 591
AvaI CYCGRG 1 cut(s) 557
AxyI CCTNAGG 1 cut(s) 849
BalI TGGCCA 1 cut(s) 656
BanII GRGCYC 4 cut(s) 275, 455, 558, 677
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 4 cut(s) 300, 431, 454, 457
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 4 cut(s) 362, 396, 782, 816
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 609, 749
BfaI CTAG 3 cut(s) 228, 585, 693
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 5 cut(s) 289, 420, 423, 443, 446
BlsI GCNGC 5 cut(s) 290, 421, 424, 444, 447
BmcAI AGTACT 2 cut(s) 238, 514
BmeT110I CYCGRG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 613
Bsa29I ATCGAT 1 cut(s) 792
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 671, 835
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 2 cut(s) 93, 413
Bse21I CCTNAGG 1 cut(s) 849
Bse3DI GCAATG 1 cut(s) 384
BseAI TCCGGA 1 cut(s) 504
BseCI ATCGAT 1 cut(s) 792
BseLI CCNNNNNNNGG 2 cut(s) 671, 835
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 204, 840
BseNI ACTGG 2 cut(s) 93, 413
BseXI GCAGC 4 cut(s) 300, 431, 454, 457
BshFI GGCC 3 cut(s) 656, 688, 730
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 505, 689
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 671, 835
BsmAI GTCTC 2 cut(s) 609, 749
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 3 cut(s) 656, 688, 730
BsoBI CYCGRG 1 cut(s) 557
Bsp1286I GDGCHC 4 cut(s) 275, 455, 558, 677
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 5 cut(s) 58, 318, 326, 570, 777
BspACI CCGC 3 cut(s) 422, 491, 662
BspANI GGCC 3 cut(s) 656, 688, 730
BspCNI CTCAG 2 cut(s) 203, 841
BspDI ATCGAT 1 cut(s) 792
BspEI TCCGGA 1 cut(s) 504
BspHI TCATGA 1 cut(s) 823
BspPI GGATC 1 cut(s) 785
BspQI GCTCTTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 688
BsrI ACTGG 2 cut(s) 93, 413
BssAI RCCGGY 1 cut(s) 688
BssMI GATC 5 cut(s) 58, 318, 326, 570, 777
Bst4CI ACNGT 2 cut(s) 603, 649
Bst6I CTCTTC 3 cut(s) 491, 533, 734
BstC8I GCNNGC 1 cut(s) 690
BstDEI CTNAG 3 cut(s) 190, 683, 849
BstEII GGTNACC 1 cut(s) 597
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 5 cut(s) 61, 321, 329, 573, 780
BstMAI GTCTC 2 cut(s) 609, 749
BstMBI GATC 5 cut(s) 58, 318, 326, 570, 777
BstMWI GCNNNNNNNGC 2 cut(s) 270, 562
BstPI GGTNACC 1 cut(s) 597
BstV1I GCAGC 4 cut(s) 300, 431, 454, 457
Bsu15I ATCGAT 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 849
BsuRI GGCC 3 cut(s) 656, 688, 730
BsuTUI ATCGAT 1 cut(s) 792
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 690
CciI TCATGA 1 cut(s) 823
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 688
ClaI ATCGAT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 237, 477, 513
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 3 cut(s) 74, 824, 835
CviQI GTAC 3 cut(s) 237, 477, 513
DdeI CTNAG 3 cut(s) 190, 683, 849
DpnI GATC 5 cut(s) 60, 320, 328, 572, 779
DpnII GATC 5 cut(s) 58, 318, 326, 570, 777
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 3 cut(s) 491, 533, 734
EarI CTCTTC 3 cut(s) 491, 533, 734
Ecl136II GAGCTC 1 cut(s) 273
Eco24I GRGCYC 4 cut(s) 275, 455, 558, 677
Eco47III AGCGCT 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 187, 282
Eco81I CCTNAGG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 273
EcoO65I GGTNACC 1 cut(s) 597
EcoT38I GRGCYC 4 cut(s) 275, 455, 558, 677
Esp3I CGTCTC 1 cut(s) 609
FaeI CATG 3 cut(s) 77, 827, 838
FaiI YATR 6 cut(s) 75, 375, 377, 580, 825, 836
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 1 cut(s) 12
FatI CATG 3 cut(s) 73, 823, 834
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 5 cut(s) 289, 420, 423, 443, 446
FriOI GRGCYC 4 cut(s) 275, 455, 558, 677
Fsp4HI GCNGC 5 cut(s) 289, 420, 423, 443, 446
FspBI CTAG 3 cut(s) 228, 585, 693
GlaI GCGC 1 cut(s) 292
GluI GCNGC 5 cut(s) 289, 420, 423, 443, 446
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 656, 688, 730
HapII CCGG 2 cut(s) 505, 689
HhaI GCGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 77, 827, 838
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 589, 813
HinfI GANTC 4 cut(s) 501, 742, 769, 839
HpaII CCGG 2 cut(s) 505, 689
HphI GGTGA 4 cut(s) 128, 147, 510, 591
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 3 cut(s) 609, 631, 699
Hpy188III TCNNGA 4 cut(s) 505, 585, 824, 848
Hpy8I GTNNAC 1 cut(s) 477
HpyAV CCTTC 5 cut(s) 141, 174, 183, 211, 609
HpyCH4III ACNGT 2 cut(s) 603, 649
HpyCH4V TGCA 5 cut(s) 12, 24, 69, 419, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 562
HpyF3I CTNAG 3 cut(s) 190, 683, 849
Hsp92II CATG 3 cut(s) 77, 827, 838
HspAI GCGC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 504
KroI GCCGGC 1 cut(s) 688
KroNI GCCGGC 1 cut(s) 690
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 5 cut(s) 58, 318, 326, 570, 777
LguI GCTCTTC 1 cut(s) 533
LpnPI CCDG 9 cut(s) 74, 383, 426, 518, 625, 702, 759, 760, 861
Lsp1109I GCAGC 4 cut(s) 300, 431, 454, 457
MaeI CTAG 3 cut(s) 228, 585, 693
MaeIII GTNAC 1 cut(s) 597
MalI GATC 5 cut(s) 60, 320, 328, 572, 779
MboI GATC 5 cut(s) 58, 318, 326, 570, 777
MboII GAAGA 9 cut(s) 62, 65, 159, 189, 288, 508, 550, 646, 751
MhlI GDGCHC 4 cut(s) 275, 455, 558, 677
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 4 cut(s) 62, 126, 178, 244
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 3 cut(s) 510, 751, 848
MnlI CCTC 6 cut(s) 117, 199, 458, 588, 844, 876
Mox20I TGGCCA 1 cut(s) 656
MroI TCCGGA 1 cut(s) 504
MroNI GCCGGC 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 656
MseI TTAA 2 cut(s) 620, 719
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 505, 689
MwoI GCNNNNNNNGC 2 cut(s) 270, 562
NaeI GCCGGC 1 cut(s) 690
NdeII GATC 5 cut(s) 58, 318, 326, 570, 777
NgoMIV GCCGGC 1 cut(s) 688
NlaIII CATG 3 cut(s) 77, 827, 838
NmeAIII GCCGAG 2 cut(s) 474, 706
NmuCI GTSAC 1 cut(s) 597
PagI TCATGA 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 533
PdiI GCCGGC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 835
PkrI GCNGC 5 cut(s) 290, 421, 424, 444, 447
PleI GAGTC 3 cut(s) 509, 750, 847
PpsI GAGTC 3 cut(s) 509, 750, 847
Psp124BI GAGCTC 1 cut(s) 275
PspEI GGTNACC 1 cut(s) 597
RsaI GTAC 3 cut(s) 238, 478, 514
RsaNI GTAC 3 cut(s) 237, 477, 513
SacI GAGCTC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 533
SaqAI TTAA 2 cut(s) 620, 719
SatI GCNGC 5 cut(s) 289, 420, 423, 443, 446
Sau3AI GATC 5 cut(s) 58, 318, 326, 570, 777
ScaI AGTACT 2 cut(s) 238, 514
SchI GAGTC 3 cut(s) 510, 751, 848
SduI GDGCHC 4 cut(s) 275, 455, 558, 677
SetI ASST 9 cut(s) 109, 266, 275, 281, 545, 593, 599, 620, 817
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
Sse9I AATT 4 cut(s) 62, 126, 178, 244
SsiI CCGC 3 cut(s) 422, 491, 662
SspMI CTAG 3 cut(s) 228, 585, 693
SstI GAGCTC 1 cut(s) 275
TaaI ACNGT 2 cut(s) 603, 649
TaqI TCGA 5 cut(s) 48, 269, 305, 321, 792
TasI AATT 4 cut(s) 62, 126, 178, 244
TatI WGTACW 3 cut(s) 236, 476, 512
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 2 cut(s) 620, 719
Tru9I TTAA 2 cut(s) 620, 719
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 4 cut(s) 288, 419, 442, 445
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 1 cut(s) 810
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 835
XapI RAATTY 1 cut(s) 178
XbaI TCTAGA 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 3 cut(s) 228, 585, 693
ZrmI AGTACT 2 cut(s) 238, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.