Rh6BG434600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016021
Physical Location & Seq
Forward (+)
65459359 .. 65462053
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434600.1

Sequence Viewer

Length: 1062 bp
ATGTCTGAAAAGAAAAAGAGCAAAAGCAAAAGCCACACACACACACCCCTTTCCCTCTGTTTTTCACTTGAAAATAGGACTTGCACTATATCAACAGGTCACCCATATATGTTACCACATCAATTTCCTACAAGACGACCAAAATCAAAACCCAGCAAAAATATGGGTTCTTGCATAAGCAAATGCAGTCCCAAAAACCACTTCCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCCAAGACAAACTGGTAATCTCGACCCAACCTCCTAAACCTACCACTCCAATTCCTTCTCACCATTCAAACAAAATCTCACCCTTTCCTTCTTCCCCTTCAAATTCCACTTCCTCAGCTTCTTCCTTCAGTTATTGCCCCACCACCACTACTAGTAGTACTACTAATTCTAACTCCACCATCAGCTCATCGAGCTCAACCTTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCGAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACGTTGAAAAAACAGCAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACACCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTGAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACTGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTAATGGCCAACCCGCCAAAAAAGGGCTCAAATCTTAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTCTGGCTCATGACCATTACATGGAGTCTGTTCCTGAGGACATTGATAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

39.02

Weight (kDa)

9.96

Isoelectric Point (pI)

66.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 997
AccIII TCCGGA 1 cut(s) 666
AciI CCGC 3 cut(s) 581, 653, 824
AclI AACGTT 1 cut(s) 587
AclWI GGATC 1 cut(s) 947
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 3 cut(s) 349, 441, 710
AfaI GTAC 3 cut(s) 397, 640, 676
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 833, 997
AgsI TTSAA 8 cut(s) 71, 306, 339, 474, 552, 592, 784, 901
AhlI ACTAGT 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 6 cut(s) 356, 423, 432, 705, 753, 977
AluI AGCT 6 cut(s) 356, 423, 432, 705, 753, 977
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 771, 911
AlwI GGATC 1 cut(s) 947
Ama87I CYCGRG 1 cut(s) 719
Aor13HI TCCGGA 1 cut(s) 666
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 3 cut(s) 816, 848, 890
ApeKI GCWGC 5 cut(s) 447, 578, 601, 604, 607
ApoI RAATTY 1 cut(s) 340
Asp700I GAANNNNTTC 2 cut(s) 500, 704
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 4 cut(s) 92, 290, 309, 672
AsuII TTCGAA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 1011
BalI TGGCCA 1 cut(s) 818
BanII GRGCYC 4 cut(s) 434, 617, 720, 839
Bbv12I GWGCWC 1 cut(s) 434
BbvCI CCTCAGC 1 cut(s) 352
BbvI GCAGC 5 cut(s) 459, 590, 613, 616, 619
BccI CCATC 1 cut(s) 425
BcgI CGANNNNNNTGC 4 cut(s) 521, 555, 944, 978
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 771, 911
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 3 cut(s) 390, 747, 855
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 6 cut(s) 448, 579, 582, 602, 605, 608
BlsI GCNGC 6 cut(s) 449, 580, 583, 603, 606, 609
BmcAI AGTACT 2 cut(s) 397, 676
BmeT110I CYCGRG 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 775
Bsa29I ATCGAT 1 cut(s) 954
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 833, 997
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 2 cut(s) 255, 572
Bse21I CCTNAGG 1 cut(s) 1011
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 666
BseCI ATCGAT 1 cut(s) 954
BseLI CCNNNNNNNGG 2 cut(s) 833, 997
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 366, 1002
BseNI ACTGG 2 cut(s) 255, 572
BseXI GCAGC 5 cut(s) 459, 590, 613, 616, 619
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 3 cut(s) 818, 850, 892
BshVI ATCGAT 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 2 cut(s) 667, 851
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 833, 997
BsmAI GTCTC 2 cut(s) 771, 911
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 3 cut(s) 818, 850, 892
BsoBI CYCGRG 1 cut(s) 719
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 4 cut(s) 434, 617, 720, 839
Bsp13I TCCGGA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 220, 477, 485, 732, 939
BspACI CCGC 3 cut(s) 581, 653, 824
BspANI GGCC 3 cut(s) 818, 850, 892
BspCNI CTCAG 2 cut(s) 365, 1003
BspDI ATCGAT 1 cut(s) 954
BspEI TCCGGA 1 cut(s) 666
BspHI TCATGA 1 cut(s) 985
BspPI GGATC 1 cut(s) 947
BspQI GCTCTTC 1 cut(s) 695
BspT104I TTCGAA 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 850
BsrI ACTGG 2 cut(s) 255, 572
BssAI RCCGGY 1 cut(s) 850
BssMI GATC 5 cut(s) 220, 477, 485, 732, 939
Bst4CI ACNGT 2 cut(s) 765, 811
Bst6I CTCTTC 3 cut(s) 653, 695, 896
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 3 cut(s) 352, 845, 1011
BstEII GGTNACC 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 223, 480, 488, 735, 942
BstMAI GTCTC 2 cut(s) 771, 911
BstMBI GATC 5 cut(s) 220, 477, 485, 732, 939
BstMWI GCNNNNNNNGC 3 cut(s) 429, 607, 724
BstPI GGTNACC 1 cut(s) 98
BstV1I GCAGC 5 cut(s) 459, 590, 613, 616, 619
Bsu15I ATCGAT 1 cut(s) 954
Bsu36I CCTNAGG 1 cut(s) 1011
BsuRI GGCC 3 cut(s) 818, 850, 892
BsuTUI ATCGAT 1 cut(s) 954
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 1 cut(s) 852
CciI TCATGA 1 cut(s) 985
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 850
ClaI ATCGAT 1 cut(s) 954
Csp6I GTAC 3 cut(s) 396, 639, 675
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 3 cut(s) 236, 986, 997
CviQI GTAC 3 cut(s) 396, 639, 675
DdeI CTNAG 3 cut(s) 352, 845, 1011
DpnI GATC 5 cut(s) 222, 479, 487, 734, 941
DpnII GATC 5 cut(s) 220, 477, 485, 732, 939
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 3 cut(s) 653, 695, 896
EarI CTCTTC 3 cut(s) 653, 695, 896
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 4 cut(s) 434, 617, 720, 839
Eco47III AGCGCT 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 3 cut(s) 349, 441, 710
Eco81I CCTNAGG 1 cut(s) 1011
Eco88I CYCGRG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 432
EcoO65I GGTNACC 1 cut(s) 98
EcoT38I GRGCYC 4 cut(s) 434, 617, 720, 839
FaeI CATG 3 cut(s) 239, 989, 1000
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 235, 985, 996
FauI CCCGC 1 cut(s) 831
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 448, 579, 582, 602, 605, 608
FriOI GRGCYC 4 cut(s) 434, 617, 720, 839
Fsp4HI GCNGC 6 cut(s) 448, 579, 582, 602, 605, 608
FspBI CTAG 3 cut(s) 390, 747, 855
GlaI GCGC 1 cut(s) 451
GluI GCNGC 6 cut(s) 448, 579, 582, 602, 605, 608
GsaI CCCAGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 3 cut(s) 818, 850, 892
HapII CCGG 2 cut(s) 667, 851
HhaI GCGC 1 cut(s) 452
Hin1II CATG 3 cut(s) 239, 989, 1000
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 4 cut(s) 663, 904, 931, 1001
HpaII CCGG 2 cut(s) 667, 851
HphI GGTGA 4 cut(s) 92, 290, 309, 672
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 5 cut(s) 7, 690, 771, 793, 861
Hpy188III TCNNGA 5 cut(s) 259, 667, 747, 986, 1010
Hpy8I GTNNAC 1 cut(s) 639
HpyAV CCTTC 5 cut(s) 303, 336, 345, 373, 771
HpyCH4III ACNGT 2 cut(s) 765, 811
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 6 cut(s) 84, 174, 186, 231, 578, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 429, 607, 724
HpyF3I CTNAG 3 cut(s) 352, 845, 1011
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 3 cut(s) 239, 989, 1000
HspAI GCGC 1 cut(s) 450
Kpn2I TCCGGA 1 cut(s) 666
KroI GCCGGC 1 cut(s) 850
KroNI GCCGGC 1 cut(s) 852
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 5 cut(s) 220, 477, 485, 732, 939
LguI GCTCTTC 1 cut(s) 695
Lsp1109I GCAGC 5 cut(s) 459, 590, 613, 616, 619
MaeI CTAG 3 cut(s) 390, 747, 855
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 3 cut(s) 98, 111, 759
MalI GATC 5 cut(s) 222, 479, 487, 734, 941
MboI GATC 5 cut(s) 220, 477, 485, 732, 939
MboII GAAGA 9 cut(s) 224, 227, 321, 351, 447, 670, 712, 808, 913
MhlI GDGCHC 4 cut(s) 434, 617, 720, 839
MlsI TGGCCA 1 cut(s) 818
MluCI AATT 5 cut(s) 122, 224, 288, 340, 403
MluNI TGGCCA 1 cut(s) 818
MlyI GAGTC 3 cut(s) 672, 913, 1010
MnlI CCTC 7 cut(s) 65, 279, 361, 620, 750, 1006, 1038
Mox20I TGGCCA 1 cut(s) 818
MroI TCCGGA 1 cut(s) 666
MroNI GCCGGC 1 cut(s) 850
MroXI GAANNNNTTC 2 cut(s) 500, 704
MscI TGGCCA 1 cut(s) 818
MseI TTAA 1 cut(s) 881
Msp20I TGGCCA 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 667, 851
MwoI GCNNNNNNNGC 3 cut(s) 429, 607, 724
NaeI GCCGGC 1 cut(s) 852
NdeII GATC 5 cut(s) 220, 477, 485, 732, 939
NgoMIV GCCGGC 1 cut(s) 850
NlaIII CATG 3 cut(s) 239, 989, 1000
NmeAIII GCCGAG 2 cut(s) 636, 868
NmuCI GTSAC 2 cut(s) 98, 759
NspV TTCGAA 1 cut(s) 494
PagI TCATGA 1 cut(s) 985
PciSI GCTCTTC 1 cut(s) 695
PdiI GCCGGC 1 cut(s) 852
PdmI GAANNNNTTC 2 cut(s) 500, 704
PfeI GAWTC 1 cut(s) 931
PflMI CCANNNNNTGG 1 cut(s) 997
PkrI GCNGC 6 cut(s) 449, 580, 583, 603, 606, 609
PleI GAGTC 3 cut(s) 671, 912, 1009
PpsI GAGTC 3 cut(s) 671, 912, 1009
Psp124BI GAGCTC 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 587
PspEI GGTNACC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 152
RsaI GTAC 3 cut(s) 397, 640, 676
RsaNI GTAC 3 cut(s) 396, 639, 675
SacI GAGCTC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 881
SatI GCNGC 6 cut(s) 448, 579, 582, 602, 605, 608
Sau3AI GATC 5 cut(s) 220, 477, 485, 732, 939
ScaI AGTACT 2 cut(s) 397, 676
SchI GAGTC 3 cut(s) 672, 913, 1010
SduI GDGCHC 4 cut(s) 434, 617, 720, 839
SfuI TTCGAA 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 5 cut(s) 122, 224, 288, 340, 403
SsiI CCGC 3 cut(s) 581, 653, 824
SspMI CTAG 3 cut(s) 390, 747, 855
SstI GAGCTC 1 cut(s) 434
TaaI ACNGT 2 cut(s) 765, 811
TaiI ACGT 1 cut(s) 590
TaqI TCGA 7 cut(s) 210, 260, 428, 464, 480, 494, 954
TasI AATT 5 cut(s) 122, 224, 288, 340, 403
TatI WGTACW 3 cut(s) 395, 638, 674
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 1 cut(s) 931
Tru1I TTAA 1 cut(s) 881
Tru9I TTAA 1 cut(s) 881
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 2 cut(s) 98, 759
TseI GCWGC 5 cut(s) 447, 578, 601, 604, 607
Tsp45I GTSAC 2 cut(s) 98, 759
TspDTI ATGAA 1 cut(s) 972
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 997
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmnI GAANNNNTTC 2 cut(s) 500, 704
XspI CTAG 3 cut(s) 390, 747, 855
ZrmI AGTACT 2 cut(s) 397, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.