Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016021

Physical Location & Seq

Genomic Coordinates Forward (+)

37520423 .. 37521625

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGTTCTTGCATTAGCAAATGCAGACCCAGAAGACACATGATAGATGAACTCAATCATGTCCAAGACAAGTTGGTAATCTCACAAGCTCCATCTAGATTAGCTGCTCCTCCAATTTCTGCTTCAAACAAAATCTCCCCCTCTCCTCCATCCCCTTCCAATTCCACTTCCTCTGCTTCTTCCTTCACTTGCACCACCAACACAAGCACTTCCCACACCAGCAGCTCACTAACCTCAACCCTGTCAAGTGCTTCTTCAGTCTTGAGTTCGAAAATCGACCGGTCTTTCTCCAACGAGTTCTTGTGGTCATGTTACAAGGAAAACCCACATGTAGTTCGGATTAATTCACTCAAAGAAGCAAGCTTTTCCTCATCATCACTGCCACAGAAGCCGCTTTTGCCAGCAGCAGTGAAGAAGAAGCAGCCAAACCTGAAAAACGCAAATGCGTCTGTTACGCCTCAAAAGAGAGTGAGGTCAAGTTCACCAACCCCATTAACAAGACAAAAGAGCTTCCGAAAAGAGCCAGAGAGGCCGCCTATGATCTCTGCATATTCTCACCCAAGTAGAATCTTGAGGTCACCTTCTCCGAGCAGAAGGTTCAACATGGCAAACCCACCAAAAGAATCAAGCCATTCAAAGCCTAACGCGTTGAATCTCAGGCCTGCAGCAAGTTCAAATTACAGCAATTCAAGCCGGCTGCTTAGACCTTATTTGAGGAGCAGAGAAACAGAGACGCGCATTCACAGGATCAGCTCCAAAATTGATGAGGTTGCAGTTGGAGAAGCTCTAGCTGACTATATGGACTCTCTTCCAGCTGAGGACATTGACAACCCCTTAATCTCTCTCGATTGTTTTATCTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.63

Weight (kDa)

10.09

Isoelectric Point (pI)

73.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21510
fragaria_vesca	FvH4_2g35040
malus_domestica	MD15G1088100.v1.1
prunus_persica	Prupe.1G442100_v2.0.a1
pyrus_communis	pycom08g08960
rosa_chinensis	RchiOBHm_Chr6g0306951
rosa_laevigata	RLG00000010751
rosa_multiflora	Rmu_sc0007920.1_g000035
rosa_roxburghii	Rroxscaffold_7G00161330
rosa_rugosa	Rorug06G0354700
rosa_samantha	Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana	Rw6G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	647, 736
AciI	CCGC	2 cut(s)	392, 533
AclWI	GGATC	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	240
AflIII	ACRYGT	2 cut(s)	328, 645
AgeI	ACCGGT	1 cut(s)	279
AgsI	TTSAA	6 cut(s)	126, 601, 636, 652, 675, 690
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	9 cut(s)	89, 104, 225, 363, 510, 753, 785, 791, 815
AluI	AGCT	9 cut(s)	89, 104, 225, 363, 510, 753, 785, 791, 815
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	1 cut(s)	755
AoxI	GGCC	2 cut(s)	530, 659
ApeKI	GCWGC	6 cut(s)	104, 222, 404, 421, 665, 697
AseI	ATTAAT	1 cut(s)	342
AsiGI	ACCGGT	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	738
AsuHPI	GGTGA	3 cut(s)	474, 548, 570
AsuII	TTCGAA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	816
BbvI	GCAGC	6 cut(s)	91, 234, 416, 433, 677, 684
BccI	CCATC	2 cut(s)	100, 157
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	3 cut(s)	96, 788, 865
BfmI	CTRYAG	1 cut(s)	663
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	8 cut(s)	105, 223, 392, 405, 422, 533, 666, 698
BlsI	GCNGC	8 cut(s)	106, 224, 393, 406, 423, 534, 667, 699
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	2 cut(s)	283, 592
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse118I	RCCGGY	2 cut(s)	279, 693
BseGI	GGATG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	670, 807
BseRI	GAGGAG	3 cut(s)	99, 135, 730
BseXI	GCAGC	6 cut(s)	91, 234, 416, 433, 677, 684
Bsh1236I	CGCG	2 cut(s)	647, 736
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	532, 661
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	280, 694
BsmAI	GTCTC	1 cut(s)	725
BsmBI	CGTCTC	1 cut(s)	725
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	532, 661
Bsp119I	TTCGAA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	540, 747
BspACI	CCGC	2 cut(s)	392, 533
BspANI	GGCC	2 cut(s)	532, 661
BspCNI	CTCAG	2 cut(s)	669, 808
BspFNI	CGCG	2 cut(s)	647, 736
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	755
BspT104I	TTCGAA	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	279, 693
BssAI	RCCGGY	2 cut(s)	279, 693
BssMI	GATC	2 cut(s)	540, 747
Bst6I	CTCTTC	1 cut(s)	813
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	361, 402, 663, 695
BstDEI	CTNAG	3 cut(s)	656, 701, 816
BstEII	GGTNACC	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	2 cut(s)	647, 736
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	2 cut(s)	543, 750
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	2 cut(s)	540, 747
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 397, 529, 690
BstNSI	RCATGY	1 cut(s)	332
BstPI	GGTNACC	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	2 cut(s)	647, 736
BstV1I	GCAGC	6 cut(s)	91, 234, 416, 433, 677, 684
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	532, 661
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	2 cut(s)	377, 414
BtsIMutI	CAGTG	2 cut(s)	377, 414
Cac8I	GCNNGC	4 cut(s)	361, 402, 663, 695
CfoI	GCGC	1 cut(s)	738
Cfr10I	RCCGGY	2 cut(s)	279, 693
CseI	GACGC	2 cut(s)	435, 742
CspAI	ACCGGT	1 cut(s)	279
CviAII	CATG	5 cut(s)	40, 59, 309, 329, 604
DdeI	CTNAG	3 cut(s)	656, 701, 816
DpnI	GATC	2 cut(s)	542, 749
DpnII	GATC	2 cut(s)	540, 747
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Eco147I	AGGCCT	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	5 cut(s)	43, 62, 312, 332, 607
FaiI	YATR	9 cut(s)	41, 60, 310, 330, 539, 550, 605, 798, 800
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	5 cut(s)	39, 58, 308, 328, 603
Fnu4HI	GCNGC	8 cut(s)	105, 223, 392, 405, 422, 533, 666, 698
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	8 cut(s)	105, 223, 392, 405, 422, 533, 666, 698
FspBI	CTAG	3 cut(s)	96, 788, 865
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	8 cut(s)	105, 223, 392, 405, 422, 533, 666, 698
HaeIII	GGCC	2 cut(s)	532, 661
HapII	CCGG	2 cut(s)	280, 694
HgaI	GACGC	2 cut(s)	435, 742
HhaI	GCGC	1 cut(s)	738
Hin1II	CATG	5 cut(s)	43, 62, 312, 332, 607
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	4 cut(s)	567, 623, 652, 803
HpaII	CCGG	2 cut(s)	280, 694
HphI	GGTGA	3 cut(s)	474, 548, 570
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	3 cut(s)	339, 515, 588
Hpy188III	TCNNGA	4 cut(s)	96, 262, 571, 845
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	4 cut(s)	165, 193, 588, 591
HpyCH4V	TGCA	6 cut(s)	12, 24, 192, 548, 665, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 397, 529, 690
HpyF3I	CTNAG	3 cut(s)	656, 701, 816
Hsp92II	CATG	5 cut(s)	43, 62, 312, 332, 607
HspAI	GCGC	1 cut(s)	736
KroI	GCCGGC	1 cut(s)	693
KroNI	GCCGGC	1 cut(s)	695
Kzo9I	GATC	2 cut(s)	540, 747
LmnI	GCTCC	4 cut(s)	94, 112, 717, 758
Lsp1109I	GCAGC	6 cut(s)	91, 234, 416, 433, 677, 684
MaeI	CTAG	3 cut(s)	96, 788, 865
MaeIII	GTNAC	3 cut(s)	311, 451, 576
MalI	GATC	2 cut(s)	542, 749
MboI	GATC	2 cut(s)	540, 747
MboII	GAAGA	7 cut(s)	45, 171, 246, 424, 427, 800, 850
MluCI	AATT	6 cut(s)	114, 160, 343, 676, 685, 759
MluI	ACGCGT	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	2 cut(s)	315, 757
MroNI	GCCGGC	1 cut(s)	693
MseI	TTAA	3 cut(s)	342, 494, 836
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	2 cut(s)	280, 694
Mva1269I	GAATGC	1 cut(s)	738
MvnI	CGCG	2 cut(s)	647, 736
MwoI	GCNNNNNNNGC	4 cut(s)	388, 397, 529, 690
NaeI	GCCGGC	1 cut(s)	695
NdeII	GATC	2 cut(s)	540, 747
NgoMIV	GCCGGC	1 cut(s)	693
NlaIII	CATG	5 cut(s)	43, 62, 312, 332, 607
NmuCI	GTSAC	1 cut(s)	576
NspI	RCATGY	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	661
PciI	ACATGT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	567, 623, 652
PinAI	ACCGGT	1 cut(s)	279
PkrI	GCNGC	8 cut(s)	106, 224, 393, 406, 423, 534, 667, 699
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PscI	ACATGT	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	342, 494, 836
SatI	GCNGC	8 cut(s)	105, 223, 392, 405, 422, 533, 666, 698
Sau3AI	GATC	2 cut(s)	540, 747
SchI	GAGTC	1 cut(s)	797
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	262, 571
SmoI	CTYRAG	2 cut(s)	262, 571
Sse9I	AATT	6 cut(s)	114, 160, 343, 676, 685, 759
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	2 cut(s)	392, 533
SspMI	CTAG	3 cut(s)	96, 788, 865
StuI	AGGCCT	1 cut(s)	661
TaqI	TCGA	3 cut(s)	269, 276, 846
TasI	AATT	6 cut(s)	114, 160, 343, 676, 685, 759
TauI	GCSGC	2 cut(s)	394, 535
TfiI	GAWTC	3 cut(s)	567, 623, 652
Tru1I	TTAA	3 cut(s)	342, 494, 836
Tru9I	TTAA	3 cut(s)	342, 494, 836
TscAI	CASTG	2 cut(s)	384, 414
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	6 cut(s)	104, 222, 404, 421, 665, 697
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	384, 414
VspI	ATTAAT	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	3 cut(s)	96, 788, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.