MD15G1088100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016021
Physical Location & Seq
Forward (+)
6139640 .. 6140593
954 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1088100.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGGTTCCTGCATTAGCAAATGCACACCCAAAAAACACTTCCTACAACAATTCAACAATGTCCAAGACAAGTTGATAATTTCACAGCCTCCTCCTAGGATCACCATCCCTCCAATTTCTGCTTCCAACAAAATCTCACCTTGTCCTCAATCCCCTTCCAACTCCACTTCCTCTGCCTCCTCCTTCCCTTGCACCACAAGCACTTCCTACACAAGCGCTTCCTCCTTGAGCTCAGCCTTGTCAAGTGCTTCTTCGGCCTCCAGCTCGAAAATTGATCGTTCTTTCTCCAACGAGTTCTTGTGGTCGTGTTACAAGGAGAACCCGCATGTCATTCGCATTAACTCGATCAAAGATGCAAGCTTTTCGAGATTTTCCCCATCGGCATTGCCACAAAAGCCGGTTTCTGCCACTGTAGTGAACAAGAAGCCGCTGCCGAACCTTAAAAGGGCAAATGTGTCAGTTACACCACAGAAGAGAGTGAGATCAAGCTCACCAAATTCTCTAGGAAGGCAAAAGAGCTTCCGAAAAGAGCCAGAGAGGCCTATGATCTCTGCATATTCACATCCAAGTAGAACTTTGAGGTCACCCTCCCCAAGTAGAAGGTTCAACATGCCAATCCCACCAAAAGAATTAAATCATTTGAGACCTAACAGTGCATTGAATGTTAGGCCTGCAGGTTCATATTGTTGCGCGACGGACCAGCGTGAGGCCGGTACTAAATCCACATCCAAGACTTGTATCGAGCCACACAACCCCTACGCGAATTACAATAATTCGAGCCGGCGACTTCGGCCTTGTTTGAACAGCAGAGAAACAGAGATGAGAATTCACAGGATCACCTCTAAAATCGATGAGGTTGCAGCTGGAGAAGCACTGGCTGACTATATGGACTCTCTTCCTGCTGAGGACATTGATAACCCTTTAATTTCTCTTGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

34.92

Weight (kDa)

9.81

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 665
AccII CGCG 2 cut(s) 692, 761
AciI CCGC 2 cut(s) 323, 428
AclWI GGATC 2 cut(s) 107, 842
AcsI RAATTY 2 cut(s) 496, 825
AfaI GTAC 1 cut(s) 715
AfeI AGCGCT 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 445, 706
AgsI TTSAA 4 cut(s) 55, 607, 661, 802
AjuI GAANNNNNNNTTGG 4 cut(s) 23, 55, 106, 138
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 6 cut(s) 231, 264, 360, 489, 519, 863
AluI AGCT 6 cut(s) 231, 264, 360, 489, 519, 863
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 107, 842
Aor51HI AGCGCT 1 cut(s) 217
AoxI GGCC 5 cut(s) 255, 539, 668, 708, 791
ApeKI GCWGC 2 cut(s) 430, 860
ApoI RAATTY 2 cut(s) 496, 825
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 2 cut(s) 218, 692
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 5 cut(s) 94, 129, 483, 576, 829
AvaII GGWCC 1 cut(s) 697
AvrII CCTAGG 1 cut(s) 95
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 417, 872
BccI CCATC 2 cut(s) 113, 385
BcgI CGANNNNNNTGC 6 cut(s) 314, 345, 348, 379, 839, 873
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 96, 503
BfmI CTRYAG 2 cut(s) 411, 672
BfoI RGCGCY 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 665
BglI GCCNNNNNGGC 1 cut(s) 538
BisI GCNGC 3 cut(s) 428, 431, 861
BlnI CCTAGG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 232
BlsI GCNGC 3 cut(s) 429, 432, 862
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 343
BpmI CTGGAG 2 cut(s) 244, 885
Bpu10I CCTNAGC 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 706
Bse118I RCCGGY 3 cut(s) 397, 710, 780
Bse1I ACTGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 3 cut(s) 105, 562, 725
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 445, 706
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 2 cut(s) 246, 894
BseNI ACTGG 1 cut(s) 879
BseRI GAGGAG 2 cut(s) 81, 169
BseXI GCAGC 2 cut(s) 417, 872
Bsh1236I CGCG 2 cut(s) 692, 761
BshFI GGCC 5 cut(s) 257, 541, 670, 710, 793
BshVI ATCGAT 1 cut(s) 849
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 3 cut(s) 398, 711, 781
BslI CCNNNNNNNGG 2 cut(s) 445, 706
BsmAI GTCTC 1 cut(s) 637
BsnI GGCC 5 cut(s) 257, 541, 670, 710, 793
Bso31I GGTCTC 1 cut(s) 637
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 6 cut(s) 99, 274, 345, 482, 546, 834
Bsp1720I GCTNAGC 1 cut(s) 232
BspACI CCGC 2 cut(s) 323, 428
BspANI GGCC 5 cut(s) 257, 541, 670, 710, 793
BspCNI CTCAG 2 cut(s) 245, 895
BspDI ATCGAT 1 cut(s) 849
BspFNI CGCG 2 cut(s) 692, 761
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 2 cut(s) 107, 842
BspTNI GGTCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 3 cut(s) 397, 710, 780
BsrI ACTGG 1 cut(s) 879
BssAI RCCGGY 3 cut(s) 397, 710, 780
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 6 cut(s) 99, 274, 345, 482, 546, 834
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 412, 653
Bst6I CTCTTC 2 cut(s) 467, 900
BstC8I GCNNGC 3 cut(s) 358, 672, 782
BstDEI CTNAG 2 cut(s) 232, 903
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 3 cut(s) 105, 562, 725
BstFNI CGCG 2 cut(s) 692, 761
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 2 cut(s) 218, 692
BstKTI GATC 6 cut(s) 102, 277, 348, 485, 549, 837
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 6 cut(s) 99, 274, 345, 482, 546, 834
BstMWI GCNNNNNNNGC 6 cut(s) 198, 254, 394, 538, 790, 869
BstNSI RCATGY 2 cut(s) 329, 613
BstPI GGTNACC 1 cut(s) 582
BstSFI CTRYAG 2 cut(s) 411, 672
BstUI CGCG 2 cut(s) 692, 761
BstV1I GCAGC 2 cut(s) 417, 872
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 5 cut(s) 257, 541, 670, 710, 793
BsuTUI ATCGAT 1 cut(s) 849
BtsCI GGATG 3 cut(s) 105, 562, 725
BtsIMutI CAGTG 3 cut(s) 408, 658, 872
BveI ACCTGC 1 cut(s) 665
Cac8I GCNNGC 3 cut(s) 358, 672, 782
CfoI GCGC 2 cut(s) 218, 692
Cfr10I RCCGGY 3 cut(s) 397, 710, 780
Cfr13I GGNCC 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 849
Csp6I GTAC 1 cut(s) 714
CviAII CATG 2 cut(s) 326, 610
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 2 cut(s) 232, 903
DpnI GATC 6 cut(s) 101, 276, 347, 484, 548, 836
DpnII GATC 6 cut(s) 99, 274, 345, 482, 546, 834
Eam1104I CTCTTC 2 cut(s) 467, 900
EarI CTCTTC 2 cut(s) 467, 900
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 2 cut(s) 541, 670
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 697
Eco47III AGCGCT 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 231
EcoO65I GGTNACC 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 825
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 329, 613
FaiI YATR 7 cut(s) 327, 545, 556, 611, 682, 885, 887
FalI AAGNNNNNCTT 4 cut(s) 235, 267, 559, 591
FatI CATG 2 cut(s) 325, 609
FauI CCCGC 1 cut(s) 330
Fnu4HI GCNGC 3 cut(s) 428, 431, 861
FokI GGATG 3 cut(s) 92, 549, 712
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 428, 431, 861
FspBI CTAG 2 cut(s) 96, 503
GlaI GCGC 2 cut(s) 217, 691
GluI GCNGC 3 cut(s) 428, 431, 861
GsuI CTGGAG 2 cut(s) 244, 885
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 5 cut(s) 257, 541, 670, 710, 793
HapII CCGG 3 cut(s) 398, 711, 781
HhaI GCGC 2 cut(s) 218, 692
Hin1II CATG 2 cut(s) 329, 613
Hin6I GCGC 2 cut(s) 216, 690
HinP1I GCGC 2 cut(s) 216, 690
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 1 cut(s) 890
HpaII CCGG 3 cut(s) 398, 711, 781
HphI GGTGA 5 cut(s) 94, 129, 483, 576, 829
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 2 cut(s) 366, 932
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 697
HpyAV CCTTC 4 cut(s) 165, 193, 501, 594
HpyCH4III ACNGT 2 cut(s) 412, 653
HpyCH4V TGCA 8 cut(s) 12, 24, 192, 356, 554, 656, 674, 860
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 254, 394, 538, 790, 869
HpyF3I CTNAG 2 cut(s) 232, 903
Hsp92II CATG 2 cut(s) 329, 613
HspAI GCGC 2 cut(s) 216, 690
KroI GCCGGC 1 cut(s) 780
KroNI GCCGGC 1 cut(s) 782
Kzo9I GATC 6 cut(s) 99, 274, 345, 482, 546, 834
Lsp1109I GCAGC 2 cut(s) 417, 872
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 96, 503
MaeIII GTNAC 3 cut(s) 308, 460, 582
MalI GATC 6 cut(s) 101, 276, 347, 484, 548, 836
MboI GATC 6 cut(s) 99, 274, 345, 482, 546, 834
MboII GAAGA 3 cut(s) 243, 484, 887
MhlI GDGCHC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 3 cut(s) 150, 183, 312
MroNI GCCGGC 1 cut(s) 780
MseI TTAA 4 cut(s) 339, 441, 632, 923
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 2 cut(s) 430, 863
MspI CCGG 3 cut(s) 398, 711, 781
MvnI CGCG 2 cut(s) 692, 761
MwoI GCNNNNNNNGC 6 cut(s) 198, 254, 394, 538, 790, 869
NaeI GCCGGC 1 cut(s) 782
NdeII GATC 6 cut(s) 99, 274, 345, 482, 546, 834
NgoMIV GCCGGC 1 cut(s) 780
NlaIII CATG 2 cut(s) 329, 613
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 582
NspI RCATGY 2 cut(s) 329, 613
OliI CACNNNNGTG 1 cut(s) 413
PceI AGGCCT 2 cut(s) 541, 670
PdiI GCCGGC 1 cut(s) 782
PkrI GCNGC 3 cut(s) 429, 432, 862
PleI GAGTC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 884
Psp124BI GAGCTC 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 4 cut(s) 339, 441, 632, 923
SatI GCNGC 3 cut(s) 428, 431, 861
Sau3AI GATC 6 cut(s) 99, 274, 345, 482, 546, 834
Sau96I GGNCC 1 cut(s) 697
SbfI CCTGCAGG 1 cut(s) 676
SchI GAGTC 1 cut(s) 884
SdaI CCTGCAGG 1 cut(s) 676
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 2 cut(s) 411, 672
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse8387I CCTGCAGG 1 cut(s) 676
SseBI AGGCCT 2 cut(s) 541, 670
SsiI CCGC 2 cut(s) 323, 428
SspMI CTAG 2 cut(s) 96, 503
SstI GAGCTC 1 cut(s) 233
StuI AGGCCT 2 cut(s) 541, 670
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 412, 653
TaqI TCGA 6 cut(s) 266, 344, 365, 741, 776, 849
TauI GCSGC 1 cut(s) 430
Tru1I TTAA 4 cut(s) 339, 441, 632, 923
Tru9I TTAA 4 cut(s) 339, 441, 632, 923
TscAI CASTG 3 cut(s) 415, 658, 879
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 2 cut(s) 430, 860
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 1 cut(s) 669
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 415, 658, 879
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 2 cut(s) 496, 825
XceI RCATGY 2 cut(s) 329, 613
XmaJI CCTAGG 1 cut(s) 95
XspI CTAG 2 cut(s) 96, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.