FvH4_2g35040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016021
Physical Location & Seq
Forward (+)
25905419 .. 25906658
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35040.t1

Sequence Viewer

Length: 888 bp
ATGGGTTCTTGCATTAGCAAATGCAGCCCCAAATCCCAGTTCCAAATCGAAGAAGACGATCAATTCTGCAATCAAGTCCAAGACAAGCTGGTAATCTCAACCCAACCTCCTAAACCTACCACTCCAATTCCCTCTCATCATCATTCAAACAAAATCTCTCCCTTTCCTTCTTCCCCTTCACATTCCACTTCCTCAGCTTCTTCCTTCTCTTATTGCACCACCACCACTACTAACTCTAACTCCACCCTCAGCTCATCGAGCTCAACTTTATCAAGCAGCGCTTCTTCGGTTTCGAGCAGTTCAAAGATCGACCGATCCTTCTCCAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCCGCATATATCTCGCATAGCTTCAATCAAGGAAGCACAAAAACCAGTTGCGGCGGCAACGTTGAGAAAACACCACCACCACTACCAGCCTAGCCCAATAAACAGAGGAAATGGGAGTCCTCAAACAACGCCGCAGAAGAGAGTCCGCACAAGTACTTCACCAACTCTAAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTAGAAGCTTAAGGTCGCCGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTTATGGCCAACCCGCCAAAAATTGTTTCAAATATCAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACGCAGACTAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCAGTTAGAGAAGCTCTGGCTCATGACCATTATATGGAGTCTGTTCCTGAGGACATTGATAACCCTTTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

32.59

Weight (kDa)

9.8

Isoelectric Point (pI)

74.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 823
AciI CCGC 6 cut(s) 359, 407, 410, 488, 502, 650
AclI AACGTT 1 cut(s) 416
AclWI GGATC 2 cut(s) 309, 773
AcoI YGGCCR 1 cut(s) 642
AfaI GTAC 1 cut(s) 511
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 823
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 6 cut(s) 147, 303, 381, 610, 666, 727
AjuI GAANNNNNNNTTGG 4 cut(s) 23, 55, 646, 678
AluBI AGCT 8 cut(s) 88, 197, 252, 261, 377, 540, 579, 803
AluI AGCT 8 cut(s) 88, 197, 252, 261, 377, 540, 579, 803
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 2 cut(s) 597, 737
AlwI GGATC 2 cut(s) 309, 773
Ama87I CYCGRG 1 cut(s) 554
Aor51HI AGCGCT 1 cut(s) 280
AoxI GGCC 3 cut(s) 642, 674, 716
ApeKI GCWGC 2 cut(s) 24, 276
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 507
AvaI CYCGRG 1 cut(s) 554
AxyI CCTNAGG 1 cut(s) 837
BalI TGGCCA 1 cut(s) 644
BanII GRGCYC 2 cut(s) 263, 555
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 2 cut(s) 193, 248
BbvI GCAGC 2 cut(s) 36, 288
BceAI ACGGC 1 cut(s) 574
BcgI CGANNNNNNTGC 4 cut(s) 350, 384, 770, 804
BcoDI GTCTC 2 cut(s) 597, 737
BfaI CTAG 4 cut(s) 447, 573, 681, 753
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 5 cut(s) 25, 277, 408, 411, 488
BlsI GCNGC 5 cut(s) 26, 278, 409, 412, 489
BmcAI AGTACT 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 554
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 2 cut(s) 193, 248
Bsa29I ATCGAT 1 cut(s) 780
BsaXI ACNNNNNCTCC 4 cut(s) 91, 121, 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 37, 401
Bse21I CCTNAGG 1 cut(s) 837
BseCI ATCGAT 1 cut(s) 780
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMII CTCAG 3 cut(s) 207, 262, 828
BseNI ACTGG 2 cut(s) 37, 401
BseXI GCAGC 2 cut(s) 36, 288
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 644, 676, 718
BshVI ATCGAT 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 2 cut(s) 597, 737
BsmBI CGTCTC 2 cut(s) 597, 737
BsnI GGCC 3 cut(s) 644, 676, 718
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 263, 555
Bsp143I GATC 5 cut(s) 58, 306, 314, 567, 765
BspACI CCGC 6 cut(s) 359, 407, 410, 488, 502, 650
BspANI GGCC 3 cut(s) 644, 676, 718
BspCNI CTCAG 3 cut(s) 206, 261, 829
BspDI ATCGAT 1 cut(s) 780
BspHI TCATGA 1 cut(s) 811
BspPI GGATC 2 cut(s) 309, 773
BspQI GCTCTTC 1 cut(s) 530
BspTI CTTAAG 1 cut(s) 580
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 2 cut(s) 37, 401
BssAI RCCGGY 1 cut(s) 676
BssMI GATC 5 cut(s) 58, 306, 314, 567, 765
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 488, 530, 722
BstAFI CTTAAG 1 cut(s) 580
BstC8I GCNNGC 1 cut(s) 678
BstDEI CTNAG 3 cut(s) 193, 248, 837
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 5 cut(s) 61, 309, 317, 570, 768
BstMAI GTCTC 2 cut(s) 597, 737
BstMBI GATC 5 cut(s) 58, 306, 314, 567, 765
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 24, 258, 559
BstV1I GCAGC 2 cut(s) 36, 288
BstV2I GAAGAC 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 780
Bsu36I CCTNAGG 1 cut(s) 837
BsuRI GGCC 3 cut(s) 644, 676, 718
BsuTUI ATCGAT 1 cut(s) 780
Cac8I GCNNGC 1 cut(s) 678
CciI TCATGA 1 cut(s) 811
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 676
ClaI ATCGAT 1 cut(s) 780
CseI GACGC 1 cut(s) 754
Csp6I GTAC 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 1 cut(s) 812
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 3 cut(s) 193, 248, 837
DpnI GATC 5 cut(s) 60, 308, 316, 569, 767
DpnII GATC 5 cut(s) 58, 306, 314, 567, 765
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 3 cut(s) 488, 530, 722
EarI CTCTTC 3 cut(s) 488, 530, 722
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 263, 555
Eco47III AGCGCT 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 554
EcoICRI GAGCTC 1 cut(s) 261
EcoT38I GRGCYC 2 cut(s) 263, 555
Esp3I CGTCTC 2 cut(s) 597, 737
FaeI CATG 1 cut(s) 815
FaiI YATR 7 cut(s) 363, 365, 374, 641, 813, 822, 824
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 1 cut(s) 811
FauI CCCGC 2 cut(s) 366, 657
Fnu4HI GCNGC 5 cut(s) 25, 277, 408, 411, 488
FriOI GRGCYC 2 cut(s) 263, 555
Fsp4HI GCNGC 5 cut(s) 25, 277, 408, 411, 488
FspBI CTAG 4 cut(s) 447, 573, 681, 753
GlaI GCGC 1 cut(s) 280
GluI GCNGC 5 cut(s) 25, 277, 408, 411, 488
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 644, 676, 718
HapII CCGG 1 cut(s) 677
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 815
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 5 cut(s) 472, 498, 730, 757, 827
HpaII CCGG 1 cut(s) 677
HphI GGTGA 1 cut(s) 507
Hpy188I TCNGA 3 cut(s) 597, 619, 687
Hpy188III TCNNGA 3 cut(s) 573, 812, 836
HpyAV CCTTC 5 cut(s) 177, 186, 214, 328, 597
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 12, 24, 69, 216, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 258, 559
HpyF3I CTNAG 3 cut(s) 193, 248, 837
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 1 cut(s) 815
HspAI GCGC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 676
KroNI GCCGGC 1 cut(s) 678
Kzo9I GATC 5 cut(s) 58, 306, 314, 567, 765
LguI GCTCTTC 1 cut(s) 530
Lsp1109I GCAGC 2 cut(s) 36, 288
MaeI CTAG 4 cut(s) 447, 573, 681, 753
MaeII ACGT 1 cut(s) 416
MalI GATC 5 cut(s) 60, 308, 316, 569, 767
MboI GATC 5 cut(s) 58, 306, 314, 567, 765
MboII GAAGA 9 cut(s) 62, 65, 162, 192, 276, 505, 547, 634, 739
MhlI GDGCHC 2 cut(s) 263, 555
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 3 cut(s) 62, 126, 657
MluNI TGGCCA 1 cut(s) 644
MlyI GAGTC 4 cut(s) 481, 507, 739, 836
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 7 cut(s) 117, 142, 202, 257, 455, 486, 832
Mox20I TGGCCA 1 cut(s) 644
MroNI GCCGGC 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 539
MscI TGGCCA 1 cut(s) 644
MseI TTAA 3 cut(s) 581, 707, 857
Msp20I TGGCCA 1 cut(s) 644
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 24, 258, 559
NaeI GCCGGC 1 cut(s) 678
NdeII GATC 5 cut(s) 58, 306, 314, 567, 765
NgoMIV GCCGGC 1 cut(s) 676
NlaIII CATG 1 cut(s) 815
NmeAIII GCCGAG 1 cut(s) 694
PagI TCATGA 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 593
PdiI GCCGGC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 757
PflMI CCANNNNNTGG 1 cut(s) 823
PkrI GCNGC 5 cut(s) 26, 278, 409, 412, 489
PleI GAGTC 4 cut(s) 480, 506, 738, 835
PpsI GAGTC 4 cut(s) 480, 506, 738, 835
Psp124BI GAGCTC 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 416
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SacI GAGCTC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 3 cut(s) 581, 707, 857
SatI GCNGC 5 cut(s) 25, 277, 408, 411, 488
Sau3AI GATC 5 cut(s) 58, 306, 314, 567, 765
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 4 cut(s) 481, 507, 739, 836
SduI GDGCHC 2 cut(s) 263, 555
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 3 cut(s) 62, 126, 657
SsiI CCGC 6 cut(s) 359, 407, 410, 488, 502, 650
SspMI CTAG 4 cut(s) 447, 573, 681, 753
SstI GAGCTC 1 cut(s) 263
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 1 cut(s) 419
TaqI TCGA 5 cut(s) 48, 257, 293, 309, 780
TaqII GACCGA 1 cut(s) 327
TasI AATT 3 cut(s) 62, 126, 657
TatI WGTACW 1 cut(s) 509
TauI GCSGC 3 cut(s) 410, 413, 490
TfiI GAWTC 1 cut(s) 757
Tru1I TTAA 3 cut(s) 581, 707, 857
Tru9I TTAA 3 cut(s) 581, 707, 857
TseI GCWGC 2 cut(s) 24, 276
TspDTI ATGAA 1 cut(s) 798
TspGWI ACGGA 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 823
Vha464I CTTAAG 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 4 cut(s) 447, 573, 681, 753
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.