RchiOBHm_Chr6g0306951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016021
Physical Location & Seq
Reverse (-)
65528195 .. 65529362
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27596

Sequence Viewer

Length: 951 bp
ATGTTACCACATCAATTTCCTACAAGACGACCAAAATCAAAACCCAGCAAAAATATGGGTTCTTGCATAAGCAAATGCAGTCCCAAAAACCACTTCCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCCAAGACAAACTGGTAATCTCGACCCAACCTCCTAAACCTACCACTCCAATTCCTTCTCACCATTCAAACAAGATCTCACCCTTTCCTTCTTCTCCTTCAAATTCCACTTCCTCAGCTTCTTCCTTCAGTTATTGCCCCACCACCACTACTAGTAGTACTACTAATTCTAACTCCACCATCAGCTCATCGAGCTCAACCTTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCGAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACGTTGAAAAAACAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACGCCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTGAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACCGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTAATGGCCAACCCGCCAAAAAAGGGCTCAAATCTTAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTCTGGCTCATGACCATTACATGGAGTCTGTTACTGAGGACATTGATAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.83

Weight (kDa)

10.0

Isoelectric Point (pI)

69.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 886
AccIII TCCGGA 1 cut(s) 555
AciI CCGC 3 cut(s) 473, 542, 713
AclI AACGTT 1 cut(s) 479
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 3 cut(s) 241, 333, 599
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 3 cut(s) 289, 529, 565
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 722, 886
AgsI TTSAA 7 cut(s) 198, 231, 366, 444, 484, 673, 790
AhlI ACTAGT 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 6 cut(s) 248, 315, 324, 594, 642, 866
AluI AGCT 6 cut(s) 248, 315, 324, 594, 642, 866
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 660, 800
AlwI GGATC 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 608
Aor13HI TCCGGA 1 cut(s) 555
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 3 cut(s) 705, 737, 779
ApeKI GCWGC 4 cut(s) 339, 470, 493, 496
ApoI RAATTY 1 cut(s) 232
Asp700I GAANNNNTTC 2 cut(s) 392, 593
AspLEI GCGC 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 182, 201, 561, 642
AsuII TTCGAA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 608
BalI TGGCCA 1 cut(s) 707
BanII GRGCYC 4 cut(s) 326, 506, 609, 728
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 351, 482, 505, 508
BccI CCATC 1 cut(s) 317
BcgI CGANNNNNNTGC 4 cut(s) 413, 447, 833, 867
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 660, 800
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 3 cut(s) 282, 636, 744
BfoI RGCGCY 1 cut(s) 345
BglII AGATCT 1 cut(s) 204
BisI GCNGC 6 cut(s) 340, 471, 474, 494, 497, 542
BlsI GCNGC 6 cut(s) 341, 472, 475, 495, 498, 543
BmcAI AGTACT 2 cut(s) 289, 565
BmeT110I CYCGRG 1 cut(s) 608
Bpu10I CCTNAGC 1 cut(s) 244
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 664
Bsa29I ATCGAT 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 539
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 722, 886
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 2 cut(s) 147, 464
Bse3DI GCAATG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 843
BseLI CCNNNNNNNGG 2 cut(s) 722, 886
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 258, 891
BseNI ACTGG 2 cut(s) 147, 464
BseXI GCAGC 4 cut(s) 351, 482, 505, 508
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 3 cut(s) 707, 739, 781
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 2 cut(s) 556, 740
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 722, 886
BsmAI GTCTC 2 cut(s) 660, 800
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 3 cut(s) 707, 739, 781
BsoBI CYCGRG 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 4 cut(s) 326, 506, 609, 728
Bsp13I TCCGGA 1 cut(s) 555
Bsp143I GATC 6 cut(s) 112, 204, 369, 377, 621, 828
BspACI CCGC 3 cut(s) 473, 542, 713
BspANI GGCC 3 cut(s) 707, 739, 781
BspCNI CTCAG 2 cut(s) 257, 892
BspDI ATCGAT 1 cut(s) 843
BspEI TCCGGA 1 cut(s) 555
BspHI TCATGA 1 cut(s) 874
BspPI GGATC 1 cut(s) 836
BspQI GCTCTTC 1 cut(s) 584
BspT104I TTCGAA 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 2 cut(s) 147, 464
BssAI RCCGGY 1 cut(s) 739
BssMI GATC 6 cut(s) 112, 204, 369, 377, 621, 828
BssNI GRCGYC 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 654, 700
Bst6I CTCTTC 3 cut(s) 542, 584, 785
BstACI GRCGYC 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 3 cut(s) 244, 734, 900
BstEII GGTNACC 1 cut(s) 648
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 6 cut(s) 115, 207, 372, 380, 624, 831
BstMAI GTCTC 2 cut(s) 660, 800
BstMBI GATC 6 cut(s) 112, 204, 369, 377, 621, 828
BstMWI GCNNNNNNNGC 2 cut(s) 321, 613
BstPI GGTNACC 1 cut(s) 648
BstV1I GCAGC 4 cut(s) 351, 482, 505, 508
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 3 cut(s) 707, 739, 781
BsuTUI ATCGAT 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 739
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 547
Csp6I GTAC 3 cut(s) 288, 528, 564
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 3 cut(s) 128, 875, 886
CviQI GTAC 3 cut(s) 288, 528, 564
DdeI CTNAG 3 cut(s) 244, 734, 900
DpnI GATC 6 cut(s) 114, 206, 371, 379, 623, 830
DpnII GATC 6 cut(s) 112, 204, 369, 377, 621, 828
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 3 cut(s) 542, 584, 785
EarI CTCTTC 3 cut(s) 542, 584, 785
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 4 cut(s) 326, 506, 609, 728
Eco47III AGCGCT 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 241, 333, 599
Eco88I CYCGRG 1 cut(s) 608
Eco91I GGTNACC 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 648
EcoT38I GRGCYC 4 cut(s) 326, 506, 609, 728
Esp3I CGTCTC 1 cut(s) 660
FaeI CATG 3 cut(s) 131, 878, 889
FaiI YATR 8 cut(s) 56, 68, 129, 426, 428, 631, 876, 887
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 66
FatI CATG 3 cut(s) 127, 874, 885
FauI CCCGC 1 cut(s) 720
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 6 cut(s) 340, 471, 474, 494, 497, 542
FriOI GRGCYC 4 cut(s) 326, 506, 609, 728
Fsp4HI GCNGC 6 cut(s) 340, 471, 474, 494, 497, 542
FspBI CTAG 3 cut(s) 282, 636, 744
GlaI GCGC 1 cut(s) 343
GluI GCNGC 6 cut(s) 340, 471, 474, 494, 497, 542
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 3 cut(s) 707, 739, 781
HapII CCGG 2 cut(s) 556, 740
HgaI GACGC 1 cut(s) 547
HhaI GCGC 1 cut(s) 344
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 3 cut(s) 131, 878, 889
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 4 cut(s) 552, 793, 820, 890
HpaII CCGG 2 cut(s) 556, 740
HphI GGTGA 4 cut(s) 182, 201, 561, 642
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 4 cut(s) 579, 660, 682, 750
Hpy188III TCNNGA 4 cut(s) 151, 556, 636, 875
Hpy8I GTNNAC 1 cut(s) 528
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 5 cut(s) 195, 228, 237, 265, 660
HpyCH4III ACNGT 2 cut(s) 654, 700
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 5 cut(s) 66, 78, 123, 470, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 613
HpyF3I CTNAG 3 cut(s) 244, 734, 900
HpySE526I ACGT 1 cut(s) 479
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 3 cut(s) 131, 878, 889
HspAI GCGC 1 cut(s) 342
Kpn2I TCCGGA 1 cut(s) 555
KroI GCCGGC 1 cut(s) 739
KroNI GCCGGC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 6 cut(s) 112, 204, 369, 377, 621, 828
LguI GCTCTTC 1 cut(s) 584
Lsp1109I GCAGC 4 cut(s) 351, 482, 505, 508
MaeI CTAG 3 cut(s) 282, 636, 744
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 3 cut(s) 3, 648, 895
MalI GATC 6 cut(s) 114, 206, 371, 379, 623, 830
MboI GATC 6 cut(s) 112, 204, 369, 377, 621, 828
MboII GAAGA 9 cut(s) 116, 119, 213, 243, 339, 559, 601, 697, 802
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 4 cut(s) 326, 506, 609, 728
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 5 cut(s) 14, 116, 180, 232, 295
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 3 cut(s) 561, 802, 899
MnlI CCTC 6 cut(s) 171, 253, 509, 639, 895, 927
Mox20I TGGCCA 1 cut(s) 707
MroI TCCGGA 1 cut(s) 555
MroNI GCCGGC 1 cut(s) 739
MroXI GAANNNNTTC 2 cut(s) 392, 593
MscI TGGCCA 1 cut(s) 707
MseI TTAA 1 cut(s) 770
Msp20I TGGCCA 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 556, 740
MwoI GCNNNNNNNGC 2 cut(s) 321, 613
NaeI GCCGGC 1 cut(s) 741
NdeII GATC 6 cut(s) 112, 204, 369, 377, 621, 828
NgoMIV GCCGGC 1 cut(s) 739
NlaIII CATG 3 cut(s) 131, 878, 889
NmeAIII GCCGAG 2 cut(s) 525, 757
NmuCI GTSAC 1 cut(s) 648
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 584
PdiI GCCGGC 1 cut(s) 741
PdmI GAANNNNTTC 2 cut(s) 392, 593
PfeI GAWTC 1 cut(s) 820
PflMI CCANNNNNTGG 1 cut(s) 886
PkrI GCNGC 6 cut(s) 341, 472, 475, 495, 498, 543
PleI GAGTC 3 cut(s) 560, 801, 898
PpsI GAGTC 3 cut(s) 560, 801, 898
Psp124BI GAGCTC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 648
PspFI CCCAGC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 3 cut(s) 289, 529, 565
RsaNI GTAC 3 cut(s) 288, 528, 564
SacI GAGCTC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 770
SatI GCNGC 6 cut(s) 340, 471, 474, 494, 497, 542
Sau3AI GATC 6 cut(s) 112, 204, 369, 377, 621, 828
ScaI AGTACT 2 cut(s) 289, 565
SchI GAGTC 3 cut(s) 561, 802, 899
SduI GDGCHC 4 cut(s) 326, 506, 609, 728
SfuI TTCGAA 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 5 cut(s) 14, 116, 180, 232, 295
SsiI CCGC 3 cut(s) 473, 542, 713
SspMI CTAG 3 cut(s) 282, 636, 744
SstI GAGCTC 1 cut(s) 326
TaaI ACNGT 2 cut(s) 654, 700
TaiI ACGT 1 cut(s) 482
TaqI TCGA 7 cut(s) 102, 152, 320, 356, 372, 386, 843
TasI AATT 5 cut(s) 14, 116, 180, 232, 295
TatI WGTACW 3 cut(s) 287, 527, 563
TauI GCSGC 2 cut(s) 476, 544
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 1 cut(s) 770
Tru9I TTAA 1 cut(s) 770
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 4 cut(s) 339, 470, 493, 496
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 1 cut(s) 861
TspGWI ACGGA 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 886
XapI RAATTY 1 cut(s) 232
XbaI TCTAGA 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 392, 593
XspI CTAG 3 cut(s) 282, 636, 744
ZrmI AGTACT 2 cut(s) 289, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.