Rh6DG467700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016021
Physical Location & Seq
Reverse (-)
63537442 .. 63540114
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG467700.1

Sequence Viewer

Length: 1059 bp
ATGTCTGAAAAGAAAAAGAGCAAAAGCAAAAGCCACACACACACACCCCTTTCCCTCTGTTTTTCACTTGAAAATAGGACTTGCACTATATCAACAGGTCACCCATATATGTTACCACATCAATTTCCTACAAGACGGCCAAAATCAAAACCCAGCAAAAATATGGGTTCTTGCATAAGCAAATGCAGTCCCAAAAACCACTTCCAAGTCGAAGAAGATGATCAATTCTGCAATCATGTCCAAGACAAACTGGTAATCTCGACCCAACCTCCTAAACCTACCACTCCAATTCCTTCTCACCATTCAAACAAAATCTCACCCTTTCCTTCTTCCCCTTCAAATTCCACTTCCTCAGCTTCTTCCTTCAGTTATTGCCCCACCACCACTACTAGTAGTACTACTAATTCTAACTCCACCATCAGCTCATCGAGCTCAACCTTGTCAAGCAGCGCTTCTTCAGTTTCGAGCAGTTCAAAGATCGACAGATCATTTTCGAACGAGTTCTTGTGGTCTTGCTACAAAGAAAACCAGCATATATCTCGCATTGCTTCAATCAAGGAAGCACAAAAACCAGTTGCAGCGGCAACGTTGAAAAAACAGCAGCAGCCGAGCCCAATAAACAGAGGAAATGGGTGTACTAAAACGACACCGCAGAAGAGAGTCCGGACAAGTACTTCACCAACTCTGAAGCGACAGAAGAGCTTCCGTAAAGAGCCCGAGAAGCCCGTGATCTCTGCATATTCTAGAAGCTTGAGGTCACCGTCTCCGAGTAGAAGGTTCAATGTTTCAGAGAAGAACAGGGGAACAGTAATGGCCAACCCGCCAAAAAAGGGCTCAAATCTTAGGCCGGCTAGTCCGAACAACAACCCAAGTGGGTTAATGGCTCGGCCTTGTTTGAAGAGTCCTGCGAGAGAGACACAGACAAGGATTCACAGGATCAGTTCCAAAATCGATGAAGTTGCTGTTAGAGAAGCTCTGGCTCATGACCATTACATGGAGTCTGTTCCTGAGGACATTGATAACCCTCTAATCTCTTTGGATTGTTTTATTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.88

Weight (kDa)

9.96

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21510
fragaria_vesca FvH4_2g35040
malus_domestica MD15G1088100.v1.1
prunus_persica Prupe.1G442100_v2.0.a1
pyrus_communis pycom08g08960
rosa_chinensis RchiOBHm_Chr6g0306951
rosa_laevigata RLG00000010751
rosa_multiflora Rmu_sc0007920.1_g000035
rosa_roxburghii Rroxscaffold_7G00161330
rosa_rugosa Rorug06G0354700
rosa_samantha Rh6AG466400 Rh6BG434600 Rh6CG481300 Rh6DG467700
rosa_wichuraiana Rw6G040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 994
AccIII TCCGGA 1 cut(s) 663
AciI CCGC 3 cut(s) 581, 650, 821
AclI AACGTT 1 cut(s) 587
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 2 cut(s) 137, 813
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 3 cut(s) 349, 441, 707
AfaI GTAC 3 cut(s) 397, 637, 673
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 830, 994
AgsI TTSAA 8 cut(s) 71, 306, 339, 474, 552, 592, 781, 898
AhlI ACTAGT 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 6 cut(s) 356, 423, 432, 702, 750, 974
AluI AGCT 6 cut(s) 356, 423, 432, 702, 750, 974
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 768, 908
AlwI GGATC 1 cut(s) 944
Ama87I CYCGRG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 663
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 4 cut(s) 137, 813, 845, 887
ApeKI GCWGC 4 cut(s) 447, 578, 601, 604
ApoI RAATTY 1 cut(s) 340
Asp700I GAANNNNTTC 2 cut(s) 500, 701
AspLEI GCGC 1 cut(s) 452
AsuHPI GGTGA 5 cut(s) 92, 290, 309, 669, 750
AsuII TTCGAA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 716
AxyI CCTNAGG 1 cut(s) 1008
BalI TGGCCA 1 cut(s) 815
BanII GRGCYC 4 cut(s) 434, 614, 717, 836
Bbv12I GWGCWC 1 cut(s) 434
BbvCI CCTCAGC 1 cut(s) 352
BbvI GCAGC 4 cut(s) 459, 590, 613, 616
BccI CCATC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 4 cut(s) 521, 555, 941, 975
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 768, 908
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 3 cut(s) 390, 744, 852
BfoI RGCGCY 1 cut(s) 453
BisI GCNGC 5 cut(s) 448, 579, 582, 602, 605
BlsI GCNGC 5 cut(s) 449, 580, 583, 603, 606
BmcAI AGTACT 2 cut(s) 397, 673
BmeT110I CYCGRG 1 cut(s) 716
Bpu10I CCTNAGC 1 cut(s) 352
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 772
Bsa29I ATCGAT 1 cut(s) 951
BsaWI WCCGGW 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 994
Bse118I RCCGGY 1 cut(s) 847
Bse1I ACTGG 2 cut(s) 255, 572
Bse21I CCTNAGG 1 cut(s) 1008
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 663
BseCI ATCGAT 1 cut(s) 951
BseLI CCNNNNNNNGG 2 cut(s) 830, 994
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 366, 999
BseNI ACTGG 2 cut(s) 255, 572
BseXI GCAGC 4 cut(s) 459, 590, 613, 616
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 4 cut(s) 139, 815, 847, 889
BshVI ATCGAT 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 2 cut(s) 664, 848
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 830, 994
BsmAI GTCTC 2 cut(s) 768, 908
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 4 cut(s) 139, 815, 847, 889
BsoBI CYCGRG 1 cut(s) 716
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 4 cut(s) 434, 614, 717, 836
Bsp13I TCCGGA 1 cut(s) 663
Bsp143I GATC 5 cut(s) 220, 477, 485, 729, 936
BspACI CCGC 3 cut(s) 581, 650, 821
BspANI GGCC 4 cut(s) 139, 815, 847, 889
BspCNI CTCAG 2 cut(s) 365, 1000
BspDI ATCGAT 1 cut(s) 951
BspEI TCCGGA 1 cut(s) 663
BspHI TCATGA 1 cut(s) 982
BspPI GGATC 1 cut(s) 944
BspQI GCTCTTC 1 cut(s) 692
BspT104I TTCGAA 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 847
BsrI ACTGG 2 cut(s) 255, 572
BssAI RCCGGY 1 cut(s) 847
BssMI GATC 5 cut(s) 220, 477, 485, 729, 936
Bst4CI ACNGT 2 cut(s) 762, 808
Bst6I CTCTTC 3 cut(s) 650, 692, 893
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 3 cut(s) 352, 842, 1008
BstEII GGTNACC 2 cut(s) 98, 756
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 223, 480, 488, 732, 939
BstMAI GTCTC 2 cut(s) 768, 908
BstMBI GATC 5 cut(s) 220, 477, 485, 729, 936
BstMWI GCNNNNNNNGC 2 cut(s) 429, 721
BstPI GGTNACC 2 cut(s) 98, 756
BstV1I GCAGC 4 cut(s) 459, 590, 613, 616
Bsu15I ATCGAT 1 cut(s) 951
Bsu36I CCTNAGG 1 cut(s) 1008
BsuRI GGCC 4 cut(s) 139, 815, 847, 889
BsuTUI ATCGAT 1 cut(s) 951
Cac8I GCNNGC 1 cut(s) 849
CciI TCATGA 1 cut(s) 982
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 951
Csp6I GTAC 3 cut(s) 396, 636, 672
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 3 cut(s) 236, 983, 994
CviQI GTAC 3 cut(s) 396, 636, 672
DdeI CTNAG 3 cut(s) 352, 842, 1008
DpnI GATC 5 cut(s) 222, 479, 487, 731, 938
DpnII GATC 5 cut(s) 220, 477, 485, 729, 936
EaeI YGGCCR 2 cut(s) 137, 813
Eam1104I CTCTTC 3 cut(s) 650, 692, 893
EarI CTCTTC 3 cut(s) 650, 692, 893
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 4 cut(s) 434, 614, 717, 836
Eco47III AGCGCT 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 3 cut(s) 349, 441, 707
Eco81I CCTNAGG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 2 cut(s) 98, 756
EcoICRI GAGCTC 1 cut(s) 432
EcoO65I GGTNACC 2 cut(s) 98, 756
EcoT38I GRGCYC 4 cut(s) 434, 614, 717, 836
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 3 cut(s) 239, 986, 997
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 235, 982, 993
FauI CCCGC 1 cut(s) 828
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 448, 579, 582, 602, 605
FriOI GRGCYC 4 cut(s) 434, 614, 717, 836
Fsp4HI GCNGC 5 cut(s) 448, 579, 582, 602, 605
FspBI CTAG 3 cut(s) 390, 744, 852
GlaI GCGC 1 cut(s) 451
GluI GCNGC 5 cut(s) 448, 579, 582, 602, 605
GsaI CCCAGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 4 cut(s) 139, 815, 847, 889
HapII CCGG 2 cut(s) 664, 848
HhaI GCGC 1 cut(s) 452
Hin1II CATG 3 cut(s) 239, 986, 997
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 4 cut(s) 660, 901, 928, 998
HpaII CCGG 2 cut(s) 664, 848
HphI GGTGA 5 cut(s) 92, 290, 309, 669, 750
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 5 cut(s) 7, 687, 768, 790, 858
Hpy188III TCNNGA 5 cut(s) 259, 664, 744, 983, 1007
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 5 cut(s) 303, 336, 345, 373, 768
HpyCH4III ACNGT 2 cut(s) 762, 808
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 6 cut(s) 84, 174, 186, 231, 578, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 429, 721
HpyF3I CTNAG 3 cut(s) 352, 842, 1008
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 3 cut(s) 239, 986, 997
HspAI GCGC 1 cut(s) 450
Kpn2I TCCGGA 1 cut(s) 663
KroI GCCGGC 1 cut(s) 847
KroNI GCCGGC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 5 cut(s) 220, 477, 485, 729, 936
LguI GCTCTTC 1 cut(s) 692
Lsp1109I GCAGC 4 cut(s) 459, 590, 613, 616
MaeI CTAG 3 cut(s) 390, 744, 852
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 3 cut(s) 98, 111, 756
MalI GATC 5 cut(s) 222, 479, 487, 731, 938
MboI GATC 5 cut(s) 220, 477, 485, 729, 936
MboII GAAGA 9 cut(s) 224, 227, 321, 351, 447, 667, 709, 805, 910
MhlI GDGCHC 4 cut(s) 434, 614, 717, 836
MlsI TGGCCA 1 cut(s) 815
MluCI AATT 5 cut(s) 122, 224, 288, 340, 403
MluNI TGGCCA 1 cut(s) 815
MlyI GAGTC 3 cut(s) 669, 910, 1007
MnlI CCTC 7 cut(s) 65, 279, 361, 617, 747, 1003, 1035
Mox20I TGGCCA 1 cut(s) 815
MroI TCCGGA 1 cut(s) 663
MroNI GCCGGC 1 cut(s) 847
MroXI GAANNNNTTC 2 cut(s) 500, 701
MscI TGGCCA 1 cut(s) 815
MseI TTAA 1 cut(s) 878
Msp20I TGGCCA 1 cut(s) 815
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 664, 848
MwoI GCNNNNNNNGC 2 cut(s) 429, 721
NaeI GCCGGC 1 cut(s) 849
NdeII GATC 5 cut(s) 220, 477, 485, 729, 936
NgoMIV GCCGGC 1 cut(s) 847
NlaIII CATG 3 cut(s) 239, 986, 997
NmeAIII GCCGAG 2 cut(s) 633, 865
NmuCI GTSAC 2 cut(s) 98, 756
NspV TTCGAA 1 cut(s) 494
PagI TCATGA 1 cut(s) 982
PciSI GCTCTTC 1 cut(s) 692
PdiI GCCGGC 1 cut(s) 849
PdmI GAANNNNTTC 2 cut(s) 500, 701
PfeI GAWTC 1 cut(s) 928
PflMI CCANNNNNTGG 1 cut(s) 994
PkrI GCNGC 5 cut(s) 449, 580, 583, 603, 606
PleI GAGTC 3 cut(s) 668, 909, 1006
PpsI GAGTC 3 cut(s) 668, 909, 1006
Psp124BI GAGCTC 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 587
PspEI GGTNACC 2 cut(s) 98, 756
PspFI CCCAGC 1 cut(s) 152
RsaI GTAC 3 cut(s) 397, 637, 673
RsaNI GTAC 3 cut(s) 396, 636, 672
SacI GAGCTC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 878
SatI GCNGC 5 cut(s) 448, 579, 582, 602, 605
Sau3AI GATC 5 cut(s) 220, 477, 485, 729, 936
ScaI AGTACT 2 cut(s) 397, 673
SchI GAGTC 3 cut(s) 669, 910, 1007
SduI GDGCHC 4 cut(s) 434, 614, 717, 836
SfuI TTCGAA 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 5 cut(s) 122, 224, 288, 340, 403
SsiI CCGC 3 cut(s) 581, 650, 821
SspMI CTAG 3 cut(s) 390, 744, 852
SstI GAGCTC 1 cut(s) 434
TaaI ACNGT 2 cut(s) 762, 808
TaiI ACGT 1 cut(s) 590
TaqI TCGA 7 cut(s) 210, 260, 428, 464, 480, 494, 951
TasI AATT 5 cut(s) 122, 224, 288, 340, 403
TatI WGTACW 3 cut(s) 395, 635, 671
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 1 cut(s) 878
Tru9I TTAA 1 cut(s) 878
TseFI GTSAC 2 cut(s) 98, 756
TseI GCWGC 4 cut(s) 447, 578, 601, 604
Tsp45I GTSAC 2 cut(s) 98, 756
TspDTI ATGAA 1 cut(s) 969
TspGWI ACGGA 1 cut(s) 695
Van91I CCANNNNNTGG 1 cut(s) 994
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmnI GAANNNNTTC 2 cut(s) 500, 701
XspI CTAG 3 cut(s) 390, 744, 852
ZrmI AGTACT 2 cut(s) 397, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.